Wall clock time and date at job start Sun Mar 29 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.44927 * 2 1 4 4 C 1.53037 * 109.46177 * 119.97074 * 2 1 3 5 5 C 1.53116 * 109.27838 * 179.19726 * 4 2 1 6 6 H 1.09001 * 109.57745 * 62.27830 * 5 4 2 7 7 N 1.46897 * 109.52631 * 182.44188 * 5 4 2 8 8 C 1.46904 * 111.00015 * 204.68353 * 7 5 4 9 9 C 1.53004 * 109.46706 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47031 * 299.99505 * 9 8 7 11 11 C 1.52996 * 109.47620 * 60.00001 * 9 8 7 12 12 C 1.50703 * 109.46565 * 180.02562 * 9 8 7 13 13 H 1.07992 * 120.00686 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99628 * 180.02562 * 12 9 8 15 15 N 1.31509 * 119.99897 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99788 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46942 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46755 * 119.99964 * 16 14 12 19 19 H 1.48494 * 109.46594 * 239.99516 * 16 14 12 20 20 C 1.53121 * 109.16211 * 302.34662 * 5 4 2 21 21 C 1.53038 * 109.27700 * 57.65214 * 20 5 4 22 22 N 1.46840 * 109.46224 * 240.02534 * 2 1 3 23 23 C 1.46901 * 111.00289 * 54.14448 * 22 2 1 24 24 H 1.09004 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47319 * 299.97585 * 1 2 3 26 26 H 1.08997 * 109.47488 * 59.97440 * 1 2 3 27 27 H 1.08999 * 109.50482 * 59.25887 * 4 2 1 28 28 H 1.09004 * 109.50299 * 299.13482 * 4 2 1 29 29 H 1.00901 * 110.99972 * 80.72725 * 7 5 4 30 30 H 1.08997 * 109.47215 * 299.99631 * 8 7 5 31 31 H 1.09000 * 109.47460 * 60.00009 * 8 7 5 32 32 H 1.08999 * 109.47187 * 60.00360 * 10 9 8 33 33 H 1.09002 * 109.47048 * 180.02562 * 10 9 8 34 34 H 1.09000 * 109.47368 * 300.00185 * 10 9 8 35 35 H 1.08996 * 109.47152 * 59.99340 * 11 9 8 36 36 H 1.08994 * 109.47289 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.46730 * 299.99721 * 11 9 8 38 38 H 0.97003 * 120.00132 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.50305 * 297.71520 * 20 5 4 40 40 H 1.08997 * 109.50558 * 177.59649 * 20 5 4 41 41 H 1.09001 * 109.46159 * 180.80834 * 21 20 5 42 42 H 1.08996 * 109.46539 * 60.84059 * 21 20 5 43 43 H 1.09002 * 109.47401 * 180.25465 * 23 22 2 44 44 H 1.09001 * 109.46874 * 60.25478 * 23 22 2 45 45 H 1.09004 * 109.46970 * 300.25611 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5709 -0.7359 1.2357 6 1 3.9466 0.2868 1.2677 7 7 4.0655 -1.4775 2.4033 8 6 5.4237 -1.0483 2.7628 9 6 5.9037 -1.8416 3.9799 10 6 4.9605 -1.5888 5.1578 11 6 5.9125 -3.3344 3.6448 12 6 7.2968 -1.4008 4.3491 13 1 7.7905 -0.6323 3.7731 14 6 7.9414 -1.9797 5.4218 15 7 7.3404 -2.9160 6.1229 16 14 9.6684 -1.4339 5.8790 17 1 10.1178 -0.3749 4.9399 18 1 9.6682 -0.9000 7.2647 19 1 10.5923 -2.5935 5.7955 20 6 4.0548 -1.4187 -0.0466 21 6 3.4865 -0.6776 -1.2590 22 7 2.0193 -0.6917 -1.1993 23 6 1.4373 -0.1106 -2.4165 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5134 0.8902 26 1 -0.3634 0.5142 -0.8897 27 1 1.6660 -1.7446 1.2577 28 1 1.6895 -0.1980 2.1400 29 1 4.0320 -2.4727 2.2404 30 1 6.0958 -1.2287 1.9239 31 1 5.4176 0.0153 3.0012 32 1 3.9527 -1.9072 4.8910 33 1 5.3027 -2.1536 6.0250 34 1 4.9543 -0.5253 5.3966 35 1 6.5845 -3.5144 2.8056 36 1 6.2541 -3.8994 4.5120 37 1 4.9048 -3.6527 3.3780 38 1 7.7937 -3.3230 6.8778 39 1 3.7125 -2.4535 -0.0594 40 1 5.1439 -1.3946 -0.0830 41 1 3.8175 -1.1699 -2.1735 42 1 3.8403 0.3533 -1.2532 43 1 1.8129 -0.6444 -3.2895 44 1 1.7157 0.9409 -2.4861 45 1 0.3514 -0.1971 -2.3771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414175997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:35 Heat of formation + Delta-G solvation = -9.280848 kcal Electronic energy + Delta-G solvation = -20018.149411 eV Core-core repulsion = 17262.821181 eV Total energy + Delta-G solvation = -2755.328230 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44682 -36.83543 -34.53104 -32.40491 -31.73854 -29.78423 -27.13742 -25.89199 -25.51952 -25.16758 -23.57231 -22.59117 -20.79111 -19.74965 -18.35557 -16.08550 -15.69528 -15.52152 -15.01554 -14.57582 -14.43450 -14.22251 -13.95161 -13.12929 -12.72881 -12.71229 -12.44834 -12.20668 -12.04025 -11.89874 -11.84193 -11.76121 -11.14179 -11.11715 -10.96299 -10.80411 -10.59645 -10.55063 -10.42805 -10.25026 -10.11810 -9.99587 -9.34994 -9.00004 -8.58198 -8.38132 -8.26526 -7.59258 -5.88596 -3.98783 3.31670 3.40001 3.43485 3.83117 4.44913 4.64546 4.86411 4.90764 5.06015 5.13212 5.32583 5.34575 5.36841 5.40270 5.52432 5.54620 5.65487 5.71455 5.78571 5.81100 5.96911 6.04277 6.11159 6.16046 6.34868 6.39504 6.49204 6.54702 6.76673 6.93979 7.02885 7.07791 7.12480 7.21194 7.42720 7.52282 7.79232 7.80133 7.88284 8.05688 8.25487 8.38674 8.59441 9.02983 9.66082 11.11860 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.042489 B = 0.004282 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.841544 B = 6537.419488 C = 6796.300655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.097 4.097 5 C 0.086 3.914 6 H 0.067 0.933 7 N -0.681 5.681 8 C 0.077 3.923 9 C 0.067 3.933 10 C -0.118 4.118 11 C -0.131 4.131 12 C -0.505 4.505 13 H 0.051 0.949 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.887 3.113 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.146 4.146 21 C 0.062 3.938 22 N -0.538 5.538 23 C 0.022 3.978 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.338 0.662 30 H 0.012 0.988 31 H 0.053 0.947 32 H 0.020 0.980 33 H 0.073 0.927 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.082 0.918 37 H 0.011 0.989 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.064 0.936 44 H 0.021 0.979 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 4.156 -13.300 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 H 0.055 0.945 4 C -0.135 4.135 5 C -0.025 4.025 6 H 0.085 0.915 7 N -0.311 5.311 8 C -0.052 4.052 9 C 0.067 3.933 10 C -0.176 4.176 11 C -0.189 4.189 12 C -0.544 4.544 13 H 0.070 0.930 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.186 4.186 21 C -0.067 4.067 22 N -0.264 5.264 23 C -0.126 4.126 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.158 0.842 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.101 0.899 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.040 0.960 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.545 3.970 -12.628 17.565 hybrid contribution 1.893 0.772 -0.604 2.131 sum -9.652 4.742 -13.232 17.051 Atomic orbital electron populations 1.21907 0.94477 1.02539 1.01459 1.21664 0.95185 0.95386 0.90561 0.94492 1.21593 0.95070 1.01285 0.95549 1.21590 0.94705 0.97791 0.88416 0.91520 1.60679 1.25969 1.09435 1.35009 1.22152 0.85701 0.99434 0.97881 1.18107 0.93958 0.91274 0.89991 1.21628 0.96152 0.98674 1.01136 1.21817 0.96001 0.99936 1.01132 1.21154 0.99447 1.20693 1.13095 0.93040 1.24886 0.97483 0.95012 0.96212 1.69846 1.36823 1.26272 1.19390 0.86619 0.85104 0.78454 0.78269 1.19992 1.21121 1.21187 1.22354 1.00283 1.00626 0.95298 1.22015 0.86974 0.98732 0.98961 1.61961 1.07296 1.55034 1.02068 1.22410 1.00633 0.97016 0.92590 0.91745 0.92088 0.92811 0.91216 0.90973 0.84232 0.96980 0.92837 0.96082 0.90816 0.96413 0.96290 0.89897 0.97023 0.93286 0.91090 0.91533 0.91126 0.95176 0.91722 0.96028 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.76 37.16 0.33 -1.08 16 2 C 0.08 0.93 2.44 -67.73 -0.17 0.77 16 3 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.10 -1.29 4.98 -26.65 -0.13 -1.42 16 5 C 0.09 1.29 2.53 -67.59 -0.17 1.12 16 6 H 0.07 1.06 7.80 -51.93 -0.41 0.65 16 7 N -0.68 -12.22 5.46 -106.59 -0.58 -12.81 16 8 C 0.08 1.61 4.39 -3.82 -0.02 1.60 16 9 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 10 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 11 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 12 C -0.51 -13.71 8.01 -34.44 -0.28 -13.99 16 13 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 14 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 15 N -0.88 -24.66 9.35 55.43 0.52 -24.14 16 16 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.15 -2.00 5.35 -26.65 -0.14 -2.14 16 21 C 0.06 0.74 5.46 -3.83 -0.02 0.71 16 22 N -0.54 -6.23 4.75 -234.92 -1.11 -7.35 16 23 C 0.02 0.20 9.06 60.07 0.54 0.75 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.46 6.32 -51.93 -0.33 0.13 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.34 6.10 6.49 -39.29 -0.26 5.84 16 30 H 0.01 0.25 7.49 -51.93 -0.39 -0.13 16 31 H 0.05 1.16 8.06 -51.93 -0.42 0.74 16 32 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 33 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 37 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.07 0.96 7.52 -51.93 -0.39 0.57 16 41 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.07 0.60 6.20 -51.93 -0.32 0.28 16 LS Contribution 332.95 15.07 5.02 5.02 Total: -1.00 -27.22 332.95 -9.31 -36.53 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.48 Total: 2.42 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 0.36 Total: -15.90 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -1.18 Total: -44.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.22 -9.31 -36.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414175997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.246 kcal (2) G-P(sol) polarization free energy of solvation -27.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds