Wall clock time and date at job start Sun Mar 29 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.44927 * 2 1 4 4 C 1.53037 * 109.46177 * 119.97074 * 2 1 3 5 5 C 1.53116 * 109.27838 * 179.19726 * 4 2 1 6 6 H 1.09001 * 109.57745 * 62.27830 * 5 4 2 7 7 N 1.46897 * 109.52631 * 182.44188 * 5 4 2 8 8 C 1.46904 * 111.00015 * 204.68353 * 7 5 4 9 9 C 1.53004 * 109.46706 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47031 * 299.99505 * 9 8 7 11 11 C 1.52996 * 109.47620 * 60.00001 * 9 8 7 12 12 C 1.50703 * 109.46565 * 180.02562 * 9 8 7 13 13 H 1.07992 * 120.00686 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99628 * 180.02562 * 12 9 8 15 15 N 1.31509 * 119.99897 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99788 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46942 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46755 * 119.99964 * 16 14 12 19 19 H 1.48494 * 109.46594 * 239.99516 * 16 14 12 20 20 C 1.53121 * 109.16211 * 302.34662 * 5 4 2 21 21 C 1.53038 * 109.27700 * 57.65214 * 20 5 4 22 22 N 1.46840 * 109.46224 * 240.02534 * 2 1 3 23 23 C 1.46901 * 111.00289 * 54.14448 * 22 2 1 24 24 H 1.09004 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47319 * 299.97585 * 1 2 3 26 26 H 1.08997 * 109.47488 * 59.97440 * 1 2 3 27 27 H 1.08999 * 109.50482 * 59.25887 * 4 2 1 28 28 H 1.09004 * 109.50299 * 299.13482 * 4 2 1 29 29 H 1.00901 * 110.99972 * 80.72725 * 7 5 4 30 30 H 1.08997 * 109.47215 * 299.99631 * 8 7 5 31 31 H 1.09000 * 109.47460 * 60.00009 * 8 7 5 32 32 H 1.08999 * 109.47187 * 60.00360 * 10 9 8 33 33 H 1.09002 * 109.47048 * 180.02562 * 10 9 8 34 34 H 1.09000 * 109.47368 * 300.00185 * 10 9 8 35 35 H 1.08996 * 109.47152 * 59.99340 * 11 9 8 36 36 H 1.08994 * 109.47289 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.46730 * 299.99721 * 11 9 8 38 38 H 0.97003 * 120.00132 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.50305 * 297.71520 * 20 5 4 40 40 H 1.08997 * 109.50558 * 177.59649 * 20 5 4 41 41 H 1.09001 * 109.46159 * 180.80834 * 21 20 5 42 42 H 1.08996 * 109.46539 * 60.84059 * 21 20 5 43 43 H 1.09002 * 109.47401 * 180.25465 * 23 22 2 44 44 H 1.09001 * 109.46874 * 60.25478 * 23 22 2 45 45 H 1.09004 * 109.46970 * 300.25611 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5709 -0.7359 1.2357 6 1 3.9466 0.2868 1.2677 7 7 4.0655 -1.4775 2.4033 8 6 5.4237 -1.0483 2.7628 9 6 5.9037 -1.8416 3.9799 10 6 4.9605 -1.5888 5.1578 11 6 5.9125 -3.3344 3.6448 12 6 7.2968 -1.4008 4.3491 13 1 7.7905 -0.6323 3.7731 14 6 7.9414 -1.9797 5.4218 15 7 7.3404 -2.9160 6.1229 16 14 9.6684 -1.4339 5.8790 17 1 10.1178 -0.3749 4.9399 18 1 9.6682 -0.9000 7.2647 19 1 10.5923 -2.5935 5.7955 20 6 4.0548 -1.4187 -0.0466 21 6 3.4865 -0.6776 -1.2590 22 7 2.0193 -0.6917 -1.1993 23 6 1.4373 -0.1106 -2.4165 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5134 0.8902 26 1 -0.3634 0.5142 -0.8897 27 1 1.6660 -1.7446 1.2577 28 1 1.6895 -0.1980 2.1400 29 1 4.0320 -2.4727 2.2404 30 1 6.0958 -1.2287 1.9239 31 1 5.4176 0.0153 3.0012 32 1 3.9527 -1.9072 4.8910 33 1 5.3027 -2.1536 6.0250 34 1 4.9543 -0.5253 5.3966 35 1 6.5845 -3.5144 2.8056 36 1 6.2541 -3.8994 4.5120 37 1 4.9048 -3.6527 3.3780 38 1 7.7937 -3.3230 6.8778 39 1 3.7125 -2.4535 -0.0594 40 1 5.1439 -1.3946 -0.0830 41 1 3.8175 -1.1699 -2.1735 42 1 3.8403 0.3533 -1.2532 43 1 1.8129 -0.6444 -3.2895 44 1 1.7157 0.9409 -2.4861 45 1 0.3514 -0.1971 -2.3771 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414175997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:35 Heat of formation + Delta-G solvation = -25.472276 kcal Electronic energy + Delta-G solvation = -20018.851524 eV Core-core repulsion = 17262.821181 eV Total energy + Delta-G solvation = -2756.030343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49463 -38.46173 -36.03962 -33.51107 -33.31950 -31.27256 -28.13801 -27.50105 -27.23832 -26.87696 -25.13658 -23.60869 -21.91174 -20.86924 -20.17391 -17.91890 -17.04644 -16.60000 -16.42299 -15.99172 -15.72932 -15.43495 -15.13409 -14.63743 -14.42423 -14.10506 -13.65528 -13.54794 -13.19448 -13.10960 -13.01609 -12.89932 -12.71799 -12.65156 -12.52719 -12.40610 -12.14707 -12.10130 -11.99864 -11.72674 -11.54476 -11.40970 -11.27814 -10.79201 -10.58307 -10.34154 -9.26606 -9.07010 -7.96230 -6.13116 1.40858 1.44059 1.53467 2.46557 2.96437 3.25709 3.36483 3.84331 3.92394 4.10107 4.11597 4.35568 4.46910 4.50142 4.53200 4.62889 4.63850 4.65565 4.68932 4.81870 4.88745 4.91863 4.98466 4.99664 5.04030 5.10963 5.12948 5.19832 5.26903 5.29012 5.32515 5.44392 5.45594 5.55600 5.70607 5.78062 6.15481 6.18829 6.21347 6.29448 6.36088 6.50962 6.68021 6.96604 7.54400 9.02040 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.042489 B = 0.004282 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.841544 B = 6537.419488 C = 6796.300655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.033 0.967 4 C -0.089 4.089 5 C 0.086 3.914 6 H 0.057 0.943 7 N -0.681 5.681 8 C 0.094 3.906 9 C 0.057 3.943 10 C -0.104 4.104 11 C -0.119 4.119 12 C -0.525 4.525 13 H 0.043 0.957 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.944 3.056 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.139 4.139 21 C 0.066 3.934 22 N -0.548 5.548 23 C 0.021 3.979 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.339 0.661 30 H 0.008 0.992 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.008 0.992 35 H 0.016 0.984 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.257 0.743 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.028 0.972 43 H 0.073 0.927 44 H 0.024 0.976 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.979 4.574 -14.679 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 H 0.051 0.949 4 C -0.128 4.128 5 C -0.024 4.024 6 H 0.075 0.925 7 N -0.312 5.312 8 C -0.035 4.035 9 C 0.057 3.943 10 C -0.162 4.162 11 C -0.177 4.177 12 C -0.564 4.564 13 H 0.061 0.939 14 C -0.177 4.177 15 N -0.542 5.542 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.179 4.179 21 C -0.063 4.063 22 N -0.273 5.273 23 C -0.126 4.126 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.396 4.393 -14.023 19.225 hybrid contribution 2.122 0.643 -0.187 2.226 sum -10.273 5.037 -14.210 18.244 Atomic orbital electron populations 1.21866 0.92778 1.02697 1.02508 1.21634 0.96492 0.94708 0.89784 0.94915 1.21513 0.93455 1.01247 0.96574 1.21643 0.95895 0.96899 0.87990 0.92453 1.60624 1.23889 1.09672 1.37011 1.21787 0.87245 0.98164 0.96333 1.18171 0.92906 0.92037 0.91197 1.21455 0.96856 0.97572 1.00301 1.21638 0.97106 0.99191 0.99727 1.21455 1.00930 1.20690 1.13345 0.93881 1.25534 1.00709 0.95159 0.96266 1.69973 1.37923 1.26800 1.19521 0.85724 0.81226 0.78079 0.77863 1.19728 1.20892 1.20820 1.22238 0.99660 1.00531 0.95454 1.21961 0.87467 0.98435 0.98443 1.61970 1.06910 1.55526 1.02902 1.22476 1.01241 0.97171 0.91744 0.91981 0.91539 0.91341 0.91640 0.91469 0.84163 0.97390 0.93861 0.94689 0.93336 0.97243 0.96495 0.92610 0.94810 0.93335 0.91347 0.92572 0.89823 0.95336 0.90816 0.95729 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.76 71.98 0.63 -1.74 16 2 C 0.08 1.75 2.44 44.94 0.11 1.86 16 3 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 4 C -0.09 -2.27 4.98 30.65 0.15 -2.11 16 5 C 0.09 2.51 2.53 44.99 0.11 2.62 16 6 H 0.06 1.79 7.80 -2.39 -0.02 1.77 16 7 N -0.68 -24.01 5.46 -491.15 -2.68 -26.70 16 8 C 0.09 3.94 4.39 86.30 0.38 4.32 16 9 C 0.06 2.81 0.57 -52.93 -0.03 2.78 16 10 C -0.10 -5.15 8.09 71.98 0.58 -4.57 16 11 C -0.12 -5.64 7.92 71.98 0.57 -5.07 16 12 C -0.53 -28.74 8.01 25.60 0.21 -28.53 16 13 H 0.04 2.37 7.74 -2.91 -0.02 2.34 16 14 C 0.02 1.22 5.15 84.66 0.44 1.66 16 15 N -0.90 -50.81 9.35 21.45 0.20 -50.61 16 16 Si 0.94 43.71 29.54 68.60 2.03 45.74 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 C -0.14 -3.66 5.35 30.65 0.16 -3.49 16 21 C 0.07 1.44 5.46 86.33 0.47 1.92 16 22 N -0.55 -11.44 4.75 -897.16 -4.26 -15.70 16 23 C 0.02 0.34 9.06 127.69 1.16 1.49 16 24 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 0.96 6.32 -2.39 -0.02 0.94 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.34 11.86 6.49 -89.69 -0.58 11.28 16 30 H 0.01 0.34 7.49 -2.39 -0.02 0.32 16 31 H 0.04 1.89 8.06 -2.39 -0.02 1.87 16 32 H 0.03 1.58 7.60 -2.39 -0.02 1.56 16 33 H 0.05 2.64 6.07 -2.39 -0.01 2.62 16 34 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 37 H 0.03 1.41 6.57 -2.39 -0.02 1.39 16 38 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 39 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.06 1.58 7.52 -2.39 -0.02 1.56 16 41 H 0.08 1.63 8.09 -2.39 -0.02 1.62 16 42 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 44 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.08 1.13 6.20 -2.38 -0.01 1.11 16 Total: -1.00 -57.11 332.95 0.57 -56.54 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.35 Total: 19.61 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 4.94 Total: -28.88 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -6.74 Total: -93.01 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -57.11 0.57 -56.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414175997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.068 kcal (2) G-P(sol) polarization free energy of solvation -57.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds