Wall clock time and date at job start Sun Mar 29 2020 23:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 H 1.08994 * 108.76273 * 56.64590 * 5 4 2 7 7 C 1.45865 * 108.79126 * 175.00344 * 5 4 2 8 8 C 1.54508 * 111.59553 * 182.20890 * 7 5 4 9 9 C 1.50458 * 108.84739 * 282.79329 * 8 7 5 10 10 C 1.54293 * 113.03085 * 92.16104 * 9 8 7 11 11 C 1.54072 * 112.28634 * 318.30522 * 10 9 8 12 12 N 1.44270 * 111.98233 * 318.90898 * 11 10 9 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47420 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99807 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99918 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00158 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99680 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47193 * 90.00277 * 20 18 16 22 22 H 1.48507 * 109.46742 * 209.99763 * 20 18 16 23 23 H 1.48494 * 109.47240 * 329.99712 * 20 18 16 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 28 28 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 29 29 H 1.09004 * 109.05388 * 302.75387 * 7 5 4 30 30 H 1.09002 * 109.05707 * 61.73863 * 7 5 4 31 31 H 1.08999 * 109.57190 * 42.60164 * 8 7 5 32 32 H 1.08998 * 109.57167 * 162.85340 * 8 7 5 33 33 H 1.08997 * 108.77163 * 213.07882 * 9 8 7 34 34 H 1.09005 * 108.77273 * 331.24768 * 9 8 7 35 35 H 1.09003 * 108.91748 * 79.02563 * 10 9 8 36 36 H 1.09000 * 108.92140 * 197.58309 * 10 9 8 37 37 H 1.08999 * 108.97819 * 79.55649 * 11 10 9 38 38 H 1.08997 * 108.97762 * 198.35235 * 11 10 9 39 39 H 1.00899 * 111.00438 * 333.56043 * 12 11 10 40 40 H 1.00901 * 111.00276 * 151.05158 * 13 2 1 41 41 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 42 42 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 43 43 H 1.09004 * 109.47258 * 300.00035 * 15 14 13 44 44 H 1.08994 * 109.47532 * 59.99762 * 15 14 13 45 45 H 0.97001 * 119.99806 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9844 -1.0218 -0.3943 7 6 4.0448 -1.4044 -2.4412 8 6 5.5870 -1.3851 -2.5340 9 6 6.0220 -0.0708 -3.1231 10 6 6.3191 1.0011 -2.0538 11 6 5.2802 0.9952 -0.9160 12 7 3.9376 0.8136 -1.4117 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 2.6599 0.4058 4.7515 17 1 2.3641 1.4380 4.6358 18 6 3.0960 -0.0533 5.9763 19 7 3.4557 -1.3104 6.1173 20 14 3.1743 1.1101 7.4358 21 1 1.8803 1.0791 8.1635 22 1 4.2660 0.6857 8.3488 23 1 3.4392 2.4899 6.9552 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6055 -0.2618 -2.1369 29 1 3.7083 -2.4343 -2.3222 30 1 3.6288 -0.9985 -3.3633 31 1 6.0142 -1.4980 -1.5376 32 1 5.9247 -2.2026 -3.1710 33 1 6.9218 -0.2330 -3.7165 34 1 5.2336 0.2977 -3.7794 35 1 7.3067 0.8149 -1.6316 36 1 6.3186 1.9828 -2.5276 37 1 5.5157 0.1855 -0.2253 38 1 5.3343 1.9436 -0.3817 39 1 3.8548 1.1445 -2.3613 40 1 2.9173 -1.1205 1.0288 41 1 2.7588 1.0462 2.1183 42 1 1.0870 0.6163 2.5525 43 1 1.9200 -1.3567 3.8031 44 1 3.5915 -0.9263 3.3684 45 1 3.7621 -1.6334 6.9791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423035902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:28 Heat of formation + Delta-G solvation = -28.727517 kcal Electronic energy + Delta-G solvation = -19779.716170 eV Core-core repulsion = 17023.544669 eV Total energy + Delta-G solvation = -2756.171501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.78177 -36.75691 -33.86009 -32.94659 -32.73040 -30.98455 -27.92685 -27.44359 -25.67319 -24.14430 -23.27748 -21.11687 -20.37024 -19.96487 -19.59622 -16.28036 -15.88316 -15.72014 -15.40864 -15.07136 -14.62322 -14.42921 -14.13014 -13.49822 -13.12326 -12.87286 -12.79685 -12.58326 -12.38799 -12.10883 -11.65791 -11.64156 -11.34577 -11.17244 -11.01131 -10.90907 -10.88871 -10.77860 -10.65901 -10.53667 -10.36578 -10.06356 -9.78530 -9.22105 -9.05301 -8.40740 -8.28443 -7.56241 -5.93501 -3.95245 3.36130 3.41890 3.45587 4.23460 4.41864 4.50056 4.61349 4.70550 4.90273 4.96306 4.98206 5.11793 5.31805 5.39316 5.42259 5.42463 5.51596 5.68060 5.70605 5.73572 5.84101 5.89846 5.96914 5.99654 6.02699 6.04521 6.10588 6.15203 6.22109 6.34020 6.49462 6.54266 6.59660 6.78866 7.07905 7.14817 7.43087 7.66945 7.85966 7.95386 8.14348 8.22052 8.53580 9.12436 9.68090 11.18040 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.004675 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.897984 B = 5988.090932 C = 6673.686109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.056 0.944 4 C -0.109 4.109 5 C 0.074 3.926 6 H 0.079 0.921 7 C -0.144 4.144 8 C -0.122 4.122 9 C -0.121 4.121 10 C -0.151 4.151 11 C 0.053 3.947 12 N -0.661 5.661 13 N -0.687 5.687 14 C 0.069 3.931 15 C 0.026 3.974 16 C -0.518 4.518 17 H 0.053 0.947 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.336 0.664 40 H 0.330 0.670 41 H 0.015 0.985 42 H 0.054 0.946 43 H 0.023 0.977 44 H 0.010 0.990 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.849 1.636 -20.328 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.036 4.036 6 H 0.097 0.903 7 C -0.183 4.183 8 C -0.160 4.160 9 C -0.158 4.158 10 C -0.190 4.190 11 C -0.077 4.077 12 N -0.289 5.289 13 N -0.320 5.320 14 C -0.059 4.059 15 C -0.012 4.012 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.029 0.971 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.976 1.467 -19.417 19.573 hybrid contribution 1.485 0.715 -0.093 1.651 sum 3.461 2.182 -19.510 19.935 Atomic orbital electron populations 1.21786 0.95853 1.01524 1.00463 1.21394 0.94564 0.97144 0.89254 0.92627 1.21806 0.93781 1.00877 0.98226 1.20623 0.96516 0.87977 0.98445 0.90299 1.21281 0.95637 1.01645 0.99698 1.21406 0.95717 0.97118 1.01759 1.21360 1.01178 0.95203 0.98101 1.22648 1.00455 0.98666 0.97272 1.21866 0.86882 1.02605 0.96374 1.60998 1.23760 1.16793 1.27390 1.60716 1.32686 1.34220 1.04346 1.22119 0.99288 0.93592 0.90929 1.19056 0.95991 0.95745 0.90371 1.21206 1.43489 0.96375 0.94597 0.92830 1.24994 0.95523 0.95056 0.98786 1.69978 1.44793 1.14364 1.24301 0.86615 0.77641 0.81215 0.82644 1.20669 1.21290 1.19940 0.92708 0.92859 0.93658 0.91337 0.92052 0.91192 0.92064 0.91432 0.91871 0.92348 0.92449 0.91801 0.92088 0.91550 0.91030 0.84629 0.85102 0.96683 0.92711 0.95871 0.97120 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.41 37.16 0.35 -1.66 16 2 C 0.09 1.32 2.57 -67.71 -0.17 1.15 16 3 H 0.06 0.93 7.13 -51.93 -0.37 0.56 16 4 C -0.11 -1.32 4.40 -26.73 -0.12 -1.43 16 5 C 0.07 0.84 1.84 -70.59 -0.13 0.71 16 6 H 0.08 1.06 5.37 -51.93 -0.28 0.78 16 7 C -0.14 -1.35 4.53 -29.32 -0.13 -1.48 16 8 C -0.12 -1.10 5.60 -27.21 -0.15 -1.25 16 9 C -0.12 -1.01 5.28 -27.32 -0.14 -1.15 16 10 C -0.15 -1.37 5.92 -25.49 -0.15 -1.52 16 11 C 0.05 0.60 6.01 -4.67 -0.03 0.57 16 12 N -0.66 -7.50 5.66 -110.97 -0.63 -8.12 16 13 N -0.69 -12.76 6.31 -106.72 -0.67 -13.43 16 14 C 0.07 1.53 5.42 -3.83 -0.02 1.51 16 15 C 0.03 0.70 5.23 -27.89 -0.15 0.55 16 16 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 17 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 20 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.85 7.45 -51.93 -0.39 0.46 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.06 0.53 7.58 -51.93 -0.39 0.14 16 31 H 0.07 0.68 7.15 -51.93 -0.37 0.31 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.46 6.79 -51.93 -0.35 0.11 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.34 3.35 7.36 -39.29 -0.29 3.06 16 40 H 0.33 5.99 6.41 -39.29 -0.25 5.74 16 41 H 0.01 0.34 8.06 -51.93 -0.42 -0.08 16 42 H 0.05 1.23 7.44 -51.93 -0.39 0.85 16 43 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -30.05 337.77 -10.20 -40.25 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.44 Total: 3.73 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.26 Total: -17.86 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.57 Total: -48.30 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.05 -10.20 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423035902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.523 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds