Wall clock time and date at job start Sun Mar 29 2020 23:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 H 1.08994 * 108.76273 * 56.64590 * 5 4 2 7 7 C 1.45865 * 108.79126 * 175.00344 * 5 4 2 8 8 C 1.54508 * 111.59553 * 182.20890 * 7 5 4 9 9 C 1.50458 * 108.84739 * 282.79329 * 8 7 5 10 10 C 1.54293 * 113.03085 * 92.16104 * 9 8 7 11 11 C 1.54072 * 112.28634 * 318.30522 * 10 9 8 12 12 N 1.44270 * 111.98233 * 318.90898 * 11 10 9 13 13 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 14 14 C 1.46900 * 110.99890 * 274.99873 * 13 2 1 15 15 C 1.52996 * 109.47450 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47420 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99807 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99918 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00158 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99680 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47193 * 90.00277 * 20 18 16 22 22 H 1.48507 * 109.46742 * 209.99763 * 20 18 16 23 23 H 1.48494 * 109.47240 * 329.99712 * 20 18 16 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 28 28 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 29 29 H 1.09004 * 109.05388 * 302.75387 * 7 5 4 30 30 H 1.09002 * 109.05707 * 61.73863 * 7 5 4 31 31 H 1.08999 * 109.57190 * 42.60164 * 8 7 5 32 32 H 1.08998 * 109.57167 * 162.85340 * 8 7 5 33 33 H 1.08997 * 108.77163 * 213.07882 * 9 8 7 34 34 H 1.09005 * 108.77273 * 331.24768 * 9 8 7 35 35 H 1.09003 * 108.91748 * 79.02563 * 10 9 8 36 36 H 1.09000 * 108.92140 * 197.58309 * 10 9 8 37 37 H 1.08999 * 108.97819 * 79.55649 * 11 10 9 38 38 H 1.08997 * 108.97762 * 198.35235 * 11 10 9 39 39 H 1.00899 * 111.00438 * 333.56043 * 12 11 10 40 40 H 1.00901 * 111.00276 * 151.05158 * 13 2 1 41 41 H 1.09002 * 109.47391 * 300.00224 * 14 13 2 42 42 H 1.09005 * 109.47266 * 59.99895 * 14 13 2 43 43 H 1.09004 * 109.47258 * 300.00035 * 15 14 13 44 44 H 1.08994 * 109.47532 * 59.99762 * 15 14 13 45 45 H 0.97001 * 119.99806 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9844 -1.0218 -0.3943 7 6 4.0448 -1.4044 -2.4412 8 6 5.5870 -1.3851 -2.5340 9 6 6.0220 -0.0708 -3.1231 10 6 6.3191 1.0011 -2.0538 11 6 5.2802 0.9952 -0.9160 12 7 3.9376 0.8136 -1.4117 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 2.6599 0.4058 4.7515 17 1 2.3641 1.4380 4.6358 18 6 3.0960 -0.0533 5.9763 19 7 3.4557 -1.3104 6.1173 20 14 3.1743 1.1101 7.4358 21 1 1.8803 1.0791 8.1635 22 1 4.2660 0.6857 8.3488 23 1 3.4392 2.4899 6.9552 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6055 -0.2618 -2.1369 29 1 3.7083 -2.4343 -2.3222 30 1 3.6288 -0.9985 -3.3633 31 1 6.0142 -1.4980 -1.5376 32 1 5.9247 -2.2026 -3.1710 33 1 6.9218 -0.2330 -3.7165 34 1 5.2336 0.2977 -3.7794 35 1 7.3067 0.8149 -1.6316 36 1 6.3186 1.9828 -2.5276 37 1 5.5157 0.1855 -0.2253 38 1 5.3343 1.9436 -0.3817 39 1 3.8548 1.1445 -2.3613 40 1 2.9173 -1.1205 1.0288 41 1 2.7588 1.0462 2.1183 42 1 1.0870 0.6163 2.5525 43 1 1.9200 -1.3567 3.8031 44 1 3.5915 -0.9263 3.3684 45 1 3.7621 -1.6334 6.9791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423035902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:27 Heat of formation + Delta-G solvation = -48.188429 kcal Electronic energy + Delta-G solvation = -19780.560059 eV Core-core repulsion = 17023.544669 eV Total energy + Delta-G solvation = -2757.015390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68781 -38.10589 -35.58901 -34.23685 -33.76112 -32.56795 -29.76302 -28.41890 -26.53541 -25.99403 -24.39313 -22.36209 -22.03449 -21.03704 -20.51544 -18.48346 -16.89892 -16.86691 -16.57580 -16.35326 -16.02025 -15.66148 -15.40364 -14.79860 -14.51291 -14.26015 -13.90136 -13.66818 -13.58842 -13.42415 -13.19532 -12.87800 -12.84173 -12.58925 -12.42031 -12.34711 -12.10794 -12.03787 -11.70241 -11.64225 -11.50445 -11.39083 -11.32558 -11.10208 -10.97933 -10.56116 -9.32782 -9.10343 -8.20018 -6.31511 1.39459 1.41538 1.52557 2.40733 3.13060 3.34035 3.48961 3.61935 3.85449 3.98301 4.07020 4.09252 4.23836 4.33068 4.45963 4.55041 4.59219 4.67083 4.70248 4.75825 4.81535 4.88292 4.90297 5.00340 5.06238 5.08228 5.09846 5.10766 5.20433 5.23377 5.27105 5.33095 5.33873 5.42298 5.46962 5.54456 5.70703 5.81362 6.15731 6.19430 6.41270 6.61022 6.67822 6.85681 7.37617 8.92253 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.021502 B = 0.004675 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.897984 B = 5988.090932 C = 6673.686109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.045 0.955 4 C -0.100 4.100 5 C 0.082 3.918 6 H 0.051 0.949 7 C -0.139 4.139 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.144 4.144 11 C 0.056 3.944 12 N -0.668 5.668 13 N -0.690 5.690 14 C 0.091 3.909 15 C 0.035 3.965 16 C -0.544 4.544 17 H 0.057 0.943 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.264 1.264 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.346 0.654 40 H 0.331 0.669 41 H 0.010 0.990 42 H 0.051 0.949 43 H -0.008 1.008 44 H -0.013 1.013 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 2.601 -21.800 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.063 0.937 4 C -0.138 4.138 5 C -0.028 4.028 6 H 0.069 0.931 7 C -0.178 4.178 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.183 4.183 11 C -0.074 4.074 12 N -0.299 5.299 13 N -0.323 5.323 14 C -0.038 4.038 15 C -0.003 4.003 16 C -0.583 4.583 17 H 0.075 0.925 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.188 1.188 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.150 0.850 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.011 0.989 44 H 0.005 0.995 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.787 2.434 -20.915 21.132 hybrid contribution 1.533 0.381 0.351 1.618 sum 3.321 2.815 -20.564 21.020 Atomic orbital electron populations 1.21774 0.94993 1.01626 1.00937 1.21489 0.95148 0.96612 0.89081 0.93732 1.21748 0.94188 1.00679 0.97199 1.20496 0.95956 0.88208 0.98164 0.93061 1.21210 0.95951 1.01350 0.99312 1.21398 0.95361 0.98087 1.01081 1.21340 1.02032 0.94358 0.97774 1.22563 0.99379 0.99689 0.96693 1.21759 0.87804 1.00931 0.96955 1.60933 1.23775 1.16917 1.28234 1.60674 1.32875 1.33768 1.04937 1.21696 0.98406 0.93162 0.90556 1.18894 0.94034 0.94980 0.92345 1.21601 1.44010 0.96879 0.95762 0.92450 1.25966 0.94686 0.96864 1.02077 1.70111 1.45277 1.16412 1.25380 0.85427 0.78062 0.79024 0.78403 1.19656 1.20515 1.18818 0.92760 0.94759 0.90825 0.91156 0.89772 0.91060 0.90408 0.93243 0.90686 0.91273 0.91450 0.91979 0.91068 0.93705 0.92424 0.83436 0.84967 0.97183 0.93038 0.98917 0.99476 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.41 71.98 0.68 -3.08 16 2 C 0.09 2.57 2.57 44.92 0.12 2.68 16 3 H 0.04 1.46 7.13 -2.39 -0.02 1.44 16 4 C -0.10 -2.25 4.40 30.60 0.13 -2.12 16 5 C 0.08 1.78 1.84 42.55 0.08 1.86 16 6 H 0.05 1.42 5.37 -2.39 -0.01 1.41 16 7 C -0.14 -2.36 4.53 28.92 0.13 -2.23 16 8 C -0.12 -2.01 5.60 30.28 0.17 -1.84 16 9 C -0.12 -1.71 5.28 30.21 0.16 -1.55 16 10 C -0.14 -2.46 5.92 31.40 0.19 -2.27 16 11 C 0.06 1.28 6.01 87.16 0.52 1.80 16 12 N -0.67 -14.61 5.66 -505.00 -2.86 -17.47 16 13 N -0.69 -26.14 6.31 -491.56 -3.10 -29.24 16 14 C 0.09 4.15 5.42 86.30 0.47 4.62 16 15 C 0.03 1.97 5.23 29.85 0.16 2.12 16 16 C -0.54 -32.41 9.11 25.60 0.23 -32.18 16 17 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 20 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.03 1.06 7.45 -2.39 -0.02 1.04 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.08 1.10 7.58 -2.39 -0.02 1.08 16 31 H 0.05 1.00 7.15 -2.39 -0.02 0.98 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.87 6.79 -2.38 -0.02 0.85 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 1.20 6.51 -2.39 -0.02 1.18 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.35 6.20 7.36 -89.70 -0.66 5.54 16 40 H 0.33 12.48 6.41 -89.69 -0.57 11.90 16 41 H 0.01 0.46 8.06 -2.39 -0.02 0.44 16 42 H 0.05 2.37 7.44 -2.38 -0.02 2.35 16 43 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 44 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 45 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -65.47 337.77 -0.45 -65.92 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.29 Total: 22.95 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.50 Total: -31.60 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -5.68 Total: -104.74 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -65.47 -0.45 -65.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423035902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.729 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds