Wall clock time and date at job start Sun Mar 29 2020 23:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47113 * 2 1 4 4 N 1.46897 * 109.47269 * 120.00169 * 2 1 3 5 5 C 1.46902 * 111.00038 * 274.99956 * 4 2 1 6 6 C 1.52995 * 109.47148 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.46843 * 299.99756 * 6 5 4 8 8 C 1.52994 * 109.47353 * 60.00150 * 6 5 4 9 9 C 1.50709 * 109.47036 * 180.02562 * 6 5 4 10 10 H 1.07995 * 119.99764 * 1.35673 * 9 6 5 11 11 C 1.37875 * 119.99631 * 181.35809 * 9 6 5 12 12 N 1.31518 * 119.99534 * 193.96199 * 11 9 6 13 13 Si 1.86799 * 120.00431 * 13.96276 * 11 9 6 14 14 H 1.48501 * 109.46919 * 84.55315 * 13 11 9 15 15 H 1.48500 * 109.47301 * 204.55607 * 13 11 9 16 16 H 1.48506 * 109.47005 * 324.55744 * 13 11 9 17 17 C 1.53004 * 109.47076 * 240.00391 * 2 1 3 18 18 H 1.08994 * 109.45901 * 304.97635 * 17 2 1 19 19 C 1.53042 * 109.46221 * 64.94515 * 17 2 1 20 20 C 1.53117 * 109.27638 * 179.19654 * 19 17 2 21 21 C 1.53125 * 109.16133 * 302.34409 * 20 19 17 22 22 C 1.53040 * 109.27753 * 57.65484 * 21 20 19 23 23 N 1.46843 * 109.46215 * 184.99682 * 17 2 1 24 24 H 1.08998 * 109.47566 * 299.99739 * 1 2 3 25 25 H 1.09003 * 109.47636 * 60.00156 * 1 2 3 26 26 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.00902 * 110.99853 * 151.05311 * 4 2 1 28 28 H 1.09004 * 109.46918 * 300.00368 * 5 4 2 29 29 H 1.08999 * 109.47133 * 60.00120 * 5 4 2 30 30 H 1.08998 * 109.47208 * 69.31994 * 7 6 5 31 31 H 1.09006 * 109.46944 * 189.31393 * 7 6 5 32 32 H 1.08997 * 109.47718 * 309.31564 * 7 6 5 33 33 H 1.08998 * 109.47769 * 60.00078 * 8 6 5 34 34 H 1.08999 * 109.46934 * 180.02562 * 8 6 5 35 35 H 1.08998 * 109.47145 * 299.99740 * 8 6 5 36 36 H 0.96999 * 119.99835 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.50089 * 299.13586 * 19 17 2 38 38 H 1.08995 * 109.50509 * 59.25583 * 19 17 2 39 39 H 1.08999 * 109.52604 * 182.43912 * 20 19 17 40 40 H 1.08999 * 109.57395 * 62.27736 * 20 19 17 41 41 H 1.08999 * 109.49879 * 297.71539 * 21 20 19 42 42 H 1.09001 * 109.50329 * 177.59656 * 21 20 19 43 43 H 1.08999 * 109.46288 * 180.80862 * 22 21 20 44 44 H 1.08997 * 109.45467 * 60.83242 * 22 21 20 45 45 H 1.00904 * 111.00197 * 302.33831 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 1.6472 -1.6892 3.8953 8 6 3.9935 -1.0850 3.2851 9 6 2.6601 0.4057 4.7514 10 1 2.3431 1.4322 4.6414 11 6 3.1232 -0.0462 5.9689 12 7 2.9280 0.6710 7.0539 13 14 4.0278 -1.6769 6.0774 14 1 5.4632 -1.4688 5.7586 15 1 3.9002 -2.2233 7.4523 16 1 3.4392 -2.6350 5.1073 17 6 2.0399 -0.7212 -1.2493 18 1 1.6055 -1.7198 -1.2949 19 6 1.6338 0.0687 -2.4956 20 6 2.1634 -0.6459 -3.7419 21 6 3.6843 -0.7857 -3.6329 22 6 4.0310 -1.5508 -2.3537 23 7 3.5034 -0.8264 -1.1904 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9173 -1.1204 1.0286 28 1 2.7588 1.0462 2.1181 29 1 1.0870 0.6162 2.5526 30 1 1.7255 -2.4500 3.1186 31 1 1.9168 -2.1238 4.8579 32 1 0.6234 -1.3179 3.9382 33 1 4.6696 -0.2613 3.0562 34 1 4.3593 -1.6236 4.1592 35 1 3.9469 -1.7640 2.4337 36 1 3.2534 0.3530 7.9106 37 1 0.5469 0.1332 -2.5473 38 1 2.0564 1.0721 -2.4443 39 1 1.9137 -0.0641 -4.6292 40 1 1.7111 -1.6349 -3.8156 41 1 4.1392 0.2043 -3.5995 42 1 4.0625 -1.3316 -4.4973 43 1 5.1138 -1.6395 -2.2657 44 1 3.5872 -2.5455 -2.3940 45 1 3.9285 0.0851 -1.1087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423166077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:25 Heat of formation + Delta-G solvation = -22.726787 kcal Electronic energy + Delta-G solvation = -20256.625150 eV Core-core repulsion = 17500.713860 eV Total energy + Delta-G solvation = -2755.911290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36739 -38.66799 -36.15475 -33.91333 -32.68733 -31.83065 -29.62285 -27.92785 -27.08042 -26.25834 -24.46173 -23.83999 -21.34337 -21.22403 -20.46288 -18.06537 -17.55851 -16.78921 -16.41716 -15.86666 -15.52695 -15.29227 -15.17111 -14.83434 -14.72085 -14.24789 -14.18135 -13.88213 -13.69614 -13.46227 -13.07987 -12.95786 -12.78911 -12.47634 -12.34970 -12.24068 -12.06792 -11.88763 -11.85283 -11.71021 -11.54387 -11.42124 -11.15778 -10.88396 -10.53377 -10.28135 -9.22948 -9.07129 -8.27102 -6.25653 1.37072 1.40867 1.51499 2.38137 3.10012 3.23311 3.43047 3.85336 3.93668 4.09859 4.22945 4.27004 4.29738 4.40261 4.46392 4.53952 4.58033 4.63841 4.74442 4.81280 4.83796 4.89376 4.92542 5.00562 5.06218 5.08570 5.12345 5.14615 5.16935 5.20404 5.22226 5.24193 5.36333 5.40085 5.46813 5.65403 5.80306 5.91177 6.15578 6.35592 6.40820 6.47454 6.76599 6.89039 7.39608 8.90285 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.034822 B = 0.005092 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.890704 B = 5497.686045 C = 5925.856802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.089 3.911 3 H 0.027 0.973 4 N -0.679 5.679 5 C 0.102 3.898 6 C 0.035 3.965 7 C -0.119 4.119 8 C -0.142 4.142 9 C -0.511 4.511 10 H 0.027 0.973 11 C 0.016 3.984 12 N -0.949 5.949 13 Si 0.943 3.057 14 H -0.283 1.283 15 H -0.315 1.315 16 H -0.214 1.214 17 C 0.097 3.903 18 H 0.081 0.919 19 C -0.147 4.147 20 C -0.116 4.116 21 C -0.153 4.153 22 C 0.061 3.939 23 N -0.694 5.694 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.353 0.647 28 H 0.006 0.994 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 -5.323 -23.670 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.045 0.955 4 N -0.314 5.314 5 C -0.027 4.027 6 C 0.034 3.966 7 C -0.177 4.177 8 C -0.199 4.199 9 C -0.550 4.550 10 H 0.045 0.955 11 C -0.180 4.180 12 N -0.590 5.590 13 Si 0.773 3.227 14 H -0.211 1.211 15 H -0.245 1.245 16 H -0.138 1.138 17 C -0.013 4.013 18 H 0.099 0.901 19 C -0.186 4.186 20 C -0.154 4.154 21 C -0.193 4.193 22 C -0.069 4.069 23 N -0.323 5.323 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.176 0.824 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.820 -6.125 -22.928 23.746 hybrid contribution 1.067 1.254 0.032 1.646 sum 0.247 -4.872 -22.896 23.410 Atomic orbital electron populations 1.21782 0.94229 1.02174 1.01150 1.21550 0.96023 0.95011 0.89567 0.95516 1.60564 1.34856 1.32575 1.03418 1.21593 0.98026 0.92716 0.90392 1.18469 0.92440 0.93327 0.92373 1.21961 0.98598 0.97935 0.99192 1.22230 0.98279 0.99845 0.99530 1.21221 1.42256 0.96844 0.94653 0.95489 1.25801 0.96523 1.00805 0.94906 1.70118 1.47496 1.42011 0.99325 0.86348 0.78924 0.82089 0.75291 1.21054 1.24500 1.13813 1.21604 0.87888 0.99303 0.92515 0.90081 1.22246 1.02154 0.99045 0.95203 1.21541 0.95615 1.00861 0.97388 1.22220 0.96386 1.01033 0.99618 1.22007 1.00270 0.97403 0.87190 1.60532 1.05194 1.24262 1.42351 0.94310 0.90876 0.92136 0.82412 0.97625 0.93666 0.92437 0.95132 0.94854 0.93832 0.95373 0.91382 0.92884 0.90474 0.92409 0.91279 0.91706 0.92305 0.90455 0.90251 0.91084 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.17 71.98 0.66 -2.63 16 2 C 0.09 2.31 2.37 44.91 0.11 2.42 16 3 H 0.03 0.75 7.80 -2.39 -0.02 0.73 16 4 N -0.68 -21.91 5.70 -491.58 -2.80 -24.71 16 5 C 0.10 4.12 4.37 86.30 0.38 4.50 16 6 C 0.04 1.61 0.57 -52.93 -0.03 1.58 16 7 C -0.12 -5.25 7.55 71.98 0.54 -4.70 16 8 C -0.14 -5.93 7.37 71.98 0.53 -5.40 16 9 C -0.51 -29.46 8.62 25.60 0.22 -29.24 16 10 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 11 C 0.02 0.97 5.32 84.65 0.45 1.42 16 12 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 13 Si 0.94 46.05 22.79 68.60 1.56 47.61 16 14 H -0.28 -13.47 7.10 99.48 0.71 -12.76 16 15 H -0.32 -15.67 7.11 99.48 0.71 -14.96 16 16 H -0.21 -9.35 4.65 99.48 0.46 -8.89 16 17 C 0.10 2.00 2.14 44.94 0.10 2.10 16 18 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 19 C -0.15 -2.42 5.09 30.65 0.16 -2.26 16 20 C -0.12 -1.61 6.00 30.68 0.18 -1.42 16 21 C -0.15 -2.06 6.08 30.65 0.19 -1.87 16 22 C 0.06 0.98 6.55 86.33 0.57 1.54 16 23 N -0.69 -14.15 5.33 -491.68 -2.62 -16.77 16 24 H 0.04 1.09 7.45 -2.39 -0.02 1.07 16 25 H 0.07 1.41 6.58 -2.39 -0.02 1.39 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.35 11.22 5.39 -89.69 -0.48 10.74 16 28 H 0.01 0.23 8.06 -2.39 -0.02 0.22 16 29 H 0.04 1.94 7.44 -2.39 -0.02 1.92 16 30 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 31 H 0.03 1.39 4.30 -2.38 -0.01 1.38 16 32 H 0.03 1.46 8.12 -2.39 -0.02 1.44 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.03 1.23 2.25 -2.39 -0.01 1.22 16 35 H 0.07 2.43 6.57 -2.39 -0.02 2.41 16 36 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 37 H 0.08 1.19 6.61 -2.39 -0.02 1.18 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.34 6.92 8.79 -89.69 -0.79 6.14 16 Total: -1.00 -64.38 322.79 -0.07 -64.45 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.56 Total: 23.89 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 4.05 Total: -33.98 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -5.13 Total: -101.98 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.56 Total: 47.61 kcal Total: -64.38 -0.07 -64.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423166077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.728 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds