Wall clock time and date at job start Sun Mar 29 2020 23:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47000 * 2 1 4 4 C 1.46897 * 111.00197 * 66.04760 * 3 2 1 5 5 C 1.52998 * 109.47311 * 196.10457 * 4 3 2 6 6 C 1.46900 * 110.99784 * 190.00145 * 3 2 1 7 7 H 1.09002 * 110.27341 * 186.85404 * 6 3 2 8 8 C 1.54598 * 110.31394 * 64.65827 * 6 3 2 9 9 C 1.54939 * 102.92426 * 219.12784 * 8 6 3 10 10 N 1.48543 * 103.22659 * 37.40952 * 9 8 6 11 11 C 1.46898 * 110.99843 * 200.28237 * 10 9 8 12 12 H 1.08999 * 109.47060 * 170.82228 * 11 10 9 13 13 C 1.53001 * 109.47228 * 50.81830 * 11 10 9 14 14 C 1.52999 * 109.46923 * 290.82116 * 11 10 9 15 15 C 1.50701 * 109.47441 * 294.99890 * 14 11 10 16 16 H 1.08003 * 119.99456 * 0.02562 * 15 14 11 17 17 C 1.37872 * 120.00422 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99732 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00219 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46807 * 59.99691 * 19 17 15 21 21 H 1.48498 * 109.47303 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47060 * 300.00027 * 19 17 15 23 23 C 1.47904 * 105.81838 * 320.79268 * 10 9 8 24 24 H 1.09005 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47367 * 299.99536 * 1 2 3 26 26 H 1.08997 * 109.47559 * 60.00563 * 1 2 3 27 27 H 1.09007 * 109.47453 * 119.99940 * 2 1 3 28 28 H 1.09002 * 109.47407 * 239.99692 * 2 1 3 29 29 H 1.09001 * 109.47067 * 316.10238 * 4 3 2 30 30 H 1.09000 * 109.47193 * 76.10202 * 4 3 2 31 31 H 1.08996 * 109.47018 * 180.61847 * 5 4 3 32 32 H 1.08996 * 109.46900 * 300.62563 * 5 4 3 33 33 H 1.09002 * 109.46697 * 60.62005 * 5 4 3 34 34 H 1.09004 * 110.71680 * 337.48408 * 8 6 3 35 35 H 1.08996 * 110.72808 * 100.76463 * 8 6 3 36 36 H 1.08998 * 110.66581 * 278.98143 * 9 8 6 37 37 H 1.08994 * 110.81226 * 155.91513 * 9 8 6 38 38 H 1.08994 * 109.47527 * 291.01870 * 13 11 10 39 39 H 1.09007 * 109.46626 * 51.01634 * 13 11 10 40 40 H 1.08996 * 109.46771 * 171.00994 * 13 11 10 41 41 H 1.08997 * 109.47415 * 55.00538 * 14 11 10 42 42 H 1.09000 * 109.46908 * 175.00095 * 14 11 10 43 43 H 0.96999 * 120.00068 * 180.02562 * 18 17 15 44 44 H 1.08990 * 109.91941 * 265.97355 * 23 10 9 45 45 H 1.09007 * 109.91276 * 144.67913 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 1.8254 3.5782 1.0721 6 6 3.4684 1.4311 -0.2382 7 1 3.8390 2.4489 -0.1161 8 6 3.7966 0.9046 -1.6542 9 6 5.0954 0.0905 -1.4289 10 7 4.8727 -0.5451 -0.1049 11 6 6.1452 -0.9598 0.5006 12 1 5.9729 -1.2711 1.5309 13 6 7.1265 0.2139 0.4797 14 6 6.7311 -2.1287 -0.2940 15 6 5.8228 -3.3249 -0.1715 16 1 4.9179 -3.2580 0.4142 17 6 6.1470 -4.5047 -0.8071 18 7 7.2492 -4.5862 -1.5199 19 14 5.0207 -5.9872 -0.6559 20 1 3.6792 -5.6466 -1.1940 21 1 5.5894 -7.1217 -1.4270 22 1 4.8977 -6.3717 0.7732 23 6 4.1991 0.4772 0.7250 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 0.6378 1.8368 1.5165 30 1 2.3326 1.7265 2.0491 31 1 1.5767 4.0835 2.0053 32 1 2.8552 3.8073 0.7980 33 1 1.1549 3.9203 0.2837 34 1 2.9969 0.2613 -2.0213 35 1 3.9740 1.7316 -2.3417 36 1 5.9625 0.7503 -1.3978 37 1 5.2172 -0.6666 -2.2035 38 1 7.4223 0.4219 -0.5485 39 1 6.6473 1.0956 0.9054 40 1 8.0087 -0.0396 1.0674 41 1 6.8207 -1.8463 -1.3429 42 1 7.7161 -2.3785 0.1003 43 1 7.4772 -5.4161 -1.9674 44 1 4.9377 1.0296 1.3056 45 1 3.4803 -0.0001 1.3912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429703011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:53 Heat of formation + Delta-G solvation = 9.429229 kcal Electronic energy + Delta-G solvation = -20432.403886 eV Core-core repulsion = 17677.886986 eV Total energy + Delta-G solvation = -2754.516901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.76555 -37.05212 -33.59606 -32.04391 -31.76871 -29.26428 -28.78652 -27.27104 -26.37162 -23.45324 -22.97701 -22.04617 -21.48297 -18.84548 -18.68073 -16.21197 -16.18514 -15.81360 -15.18188 -14.68396 -14.40858 -14.05619 -13.91448 -13.48922 -13.20937 -12.55044 -12.44515 -12.10134 -11.89127 -11.81716 -11.72848 -11.61118 -11.46859 -11.33066 -11.08984 -10.91333 -10.88557 -10.70461 -10.63505 -10.43172 -10.37110 -10.05292 -9.89958 -9.15925 -8.99802 -8.24507 -8.12598 -7.51018 -5.86824 -3.84603 3.41816 3.45463 3.49144 3.97372 4.57481 4.65816 4.92336 4.98191 5.08897 5.23038 5.30944 5.42154 5.44691 5.50682 5.56312 5.61699 5.66319 5.68541 5.75652 5.84375 5.88490 5.94426 5.95708 6.02638 6.05581 6.12097 6.15792 6.23996 6.31211 6.40763 6.42283 6.50442 6.61693 6.75254 6.99636 7.22621 7.29347 7.52119 7.64187 7.85131 8.02170 8.14179 8.60253 9.20767 9.76898 11.25196 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.006166 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.659425 B = 4540.223951 C = 5332.429265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.527 5.527 4 C 0.042 3.958 5 C -0.145 4.145 6 C 0.075 3.925 7 H 0.081 0.919 8 C -0.115 4.115 9 C 0.033 3.967 10 N -0.482 5.482 11 C 0.077 3.923 12 H 0.066 0.934 13 C -0.184 4.184 14 C 0.034 3.966 15 C -0.490 4.490 16 H 0.058 0.942 17 C 0.051 3.949 18 N -0.904 5.904 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.280 1.280 23 C -0.002 4.002 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.258 0.742 44 H 0.039 0.961 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 14.376 3.456 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.251 5.251 4 C -0.086 4.086 5 C -0.202 4.202 6 C -0.034 4.034 7 H 0.099 0.901 8 C -0.153 4.153 9 C -0.095 4.095 10 N -0.205 5.205 11 C -0.032 4.032 12 H 0.084 0.916 13 C -0.243 4.243 14 C -0.003 4.003 15 C -0.528 4.528 16 H 0.077 0.923 17 C -0.148 4.148 18 N -0.545 5.545 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.132 4.132 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.896 14.017 2.931 17.407 hybrid contribution 0.463 -0.599 0.889 1.168 sum -9.433 13.418 3.820 16.841 Atomic orbital electron populations 1.21825 0.95644 1.01317 1.01690 1.22141 0.94732 0.88830 1.02555 1.62309 1.12859 1.16225 1.33751 1.22130 1.00851 0.94667 0.90917 1.21754 1.01965 0.95215 1.01312 1.22616 0.86856 0.98349 0.95626 0.90095 1.22594 0.98343 0.99150 0.95223 1.23275 0.95553 0.96939 0.93739 1.64975 1.21894 1.32287 1.01338 1.22042 0.86758 0.95111 0.99248 0.91569 1.22527 1.00739 0.99473 1.01550 1.19122 0.95418 0.90988 0.94812 1.21114 1.06942 0.95172 1.29584 0.92350 1.24992 0.95255 0.98730 0.95838 1.69953 1.24301 1.26677 1.33585 0.86703 0.81174 0.82468 0.77865 1.20358 1.21646 1.20561 1.23599 0.98337 0.93937 0.97330 0.92426 0.93208 0.92274 0.94015 0.89507 0.90778 0.94807 0.92792 0.92893 0.92116 0.90165 0.91610 0.93844 0.89496 0.92533 0.94008 0.92707 0.96380 0.96509 0.93290 0.94304 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.88 37.15 0.37 -1.30 16 2 C 0.04 0.61 4.81 -3.83 -0.02 0.59 16 3 N -0.53 -6.76 4.45 -225.02 -1.00 -7.76 16 4 C 0.04 0.47 5.40 -3.83 -0.02 0.45 16 5 C -0.14 -1.39 9.99 37.16 0.37 -1.02 16 6 C 0.07 1.03 2.94 -66.35 -0.19 0.83 16 7 H 0.08 1.04 6.45 -51.93 -0.33 0.71 16 8 C -0.11 -1.67 6.49 -24.87 -0.16 -1.83 16 9 C 0.03 0.57 5.53 -1.89 -0.01 0.56 16 10 N -0.48 -9.17 4.97 -222.49 -1.11 -10.27 16 11 C 0.08 1.59 2.24 -67.71 -0.15 1.44 16 12 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 13 C -0.18 -3.20 8.20 37.16 0.30 -2.90 16 14 C 0.03 0.86 4.43 -27.88 -0.12 0.74 16 15 C -0.49 -13.84 8.84 -34.44 -0.30 -14.15 16 16 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 17 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 18 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 19 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.00 -0.03 4.94 -2.75 -0.01 -0.05 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.51 6.28 -51.93 -0.33 0.19 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.63 6.29 -51.92 -0.33 0.30 16 28 H 0.09 1.34 6.02 -51.93 -0.31 1.02 16 29 H 0.07 0.77 5.94 -51.93 -0.31 0.46 16 30 H 0.03 0.40 7.02 -51.93 -0.36 0.03 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.53 6.60 -51.93 -0.34 0.18 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.23 6.08 -51.93 -0.32 0.91 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.72 5.53 -51.93 -0.29 0.44 16 37 H 0.09 1.72 7.61 -51.93 -0.40 1.32 16 38 H 0.06 0.98 6.47 -51.93 -0.34 0.65 16 39 H 0.04 0.65 6.14 -51.93 -0.32 0.33 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.49 7.01 -51.93 -0.36 0.12 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.04 0.60 5.89 -51.93 -0.31 0.30 16 45 H 0.07 1.19 5.33 -51.93 -0.28 0.91 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -29.43 328.54 -9.33 -38.76 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.84 Total: -0.95 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -0.05 Total: -15.25 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -1.37 Total: -44.73 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.43 -9.33 -38.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429703011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.189 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds