Wall clock time and date at job start Sun Mar 29 2020 23:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46900 * 109.47000 * 2 1 4 4 C 1.46897 * 111.00197 * 66.04760 * 3 2 1 5 5 C 1.52998 * 109.47311 * 196.10457 * 4 3 2 6 6 C 1.46900 * 110.99784 * 190.00145 * 3 2 1 7 7 H 1.09002 * 110.27341 * 186.85404 * 6 3 2 8 8 C 1.54598 * 110.31394 * 64.65827 * 6 3 2 9 9 C 1.54939 * 102.92426 * 219.12784 * 8 6 3 10 10 N 1.48543 * 103.22659 * 37.40952 * 9 8 6 11 11 C 1.46898 * 110.99843 * 200.28237 * 10 9 8 12 12 H 1.08999 * 109.47060 * 170.82228 * 11 10 9 13 13 C 1.53001 * 109.47228 * 50.81830 * 11 10 9 14 14 C 1.52999 * 109.46923 * 290.82116 * 11 10 9 15 15 C 1.50701 * 109.47441 * 294.99890 * 14 11 10 16 16 H 1.08003 * 119.99456 * 0.02562 * 15 14 11 17 17 C 1.37872 * 120.00422 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99732 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00219 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46807 * 59.99691 * 19 17 15 21 21 H 1.48498 * 109.47303 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47060 * 300.00027 * 19 17 15 23 23 C 1.47904 * 105.81838 * 320.79268 * 10 9 8 24 24 H 1.09005 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47367 * 299.99536 * 1 2 3 26 26 H 1.08997 * 109.47559 * 60.00563 * 1 2 3 27 27 H 1.09007 * 109.47453 * 119.99940 * 2 1 3 28 28 H 1.09002 * 109.47407 * 239.99692 * 2 1 3 29 29 H 1.09001 * 109.47067 * 316.10238 * 4 3 2 30 30 H 1.09000 * 109.47193 * 76.10202 * 4 3 2 31 31 H 1.08996 * 109.47018 * 180.61847 * 5 4 3 32 32 H 1.08996 * 109.46900 * 300.62563 * 5 4 3 33 33 H 1.09002 * 109.46697 * 60.62005 * 5 4 3 34 34 H 1.09004 * 110.71680 * 337.48408 * 8 6 3 35 35 H 1.08996 * 110.72808 * 100.76463 * 8 6 3 36 36 H 1.08998 * 110.66581 * 278.98143 * 9 8 6 37 37 H 1.08994 * 110.81226 * 155.91513 * 9 8 6 38 38 H 1.08994 * 109.47527 * 291.01870 * 13 11 10 39 39 H 1.09007 * 109.46626 * 51.01634 * 13 11 10 40 40 H 1.08996 * 109.46771 * 171.00994 * 13 11 10 41 41 H 1.08997 * 109.47415 * 55.00538 * 14 11 10 42 42 H 1.09000 * 109.46908 * 175.00095 * 14 11 10 43 43 H 0.96999 * 120.00068 * 180.02562 * 18 17 15 44 44 H 1.08990 * 109.91941 * 265.97355 * 23 10 9 45 45 H 1.09007 * 109.91276 * 144.67913 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 1.8254 3.5782 1.0721 6 6 3.4684 1.4311 -0.2382 7 1 3.8390 2.4489 -0.1161 8 6 3.7966 0.9046 -1.6542 9 6 5.0954 0.0905 -1.4289 10 7 4.8727 -0.5451 -0.1049 11 6 6.1452 -0.9598 0.5006 12 1 5.9729 -1.2711 1.5309 13 6 7.1265 0.2139 0.4797 14 6 6.7311 -2.1287 -0.2940 15 6 5.8228 -3.3249 -0.1715 16 1 4.9179 -3.2580 0.4142 17 6 6.1470 -4.5047 -0.8071 18 7 7.2492 -4.5862 -1.5199 19 14 5.0207 -5.9872 -0.6559 20 1 3.6792 -5.6466 -1.1940 21 1 5.5894 -7.1217 -1.4270 22 1 4.8977 -6.3717 0.7732 23 6 4.1991 0.4772 0.7250 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 0.6378 1.8368 1.5165 30 1 2.3326 1.7265 2.0491 31 1 1.5767 4.0835 2.0053 32 1 2.8552 3.8073 0.7980 33 1 1.1549 3.9203 0.2837 34 1 2.9969 0.2613 -2.0213 35 1 3.9740 1.7316 -2.3417 36 1 5.9625 0.7503 -1.3978 37 1 5.2172 -0.6666 -2.2035 38 1 7.4223 0.4219 -0.5485 39 1 6.6473 1.0956 0.9054 40 1 8.0087 -0.0396 1.0674 41 1 6.8207 -1.8463 -1.3429 42 1 7.7161 -2.3785 0.1003 43 1 7.4772 -5.4161 -1.9674 44 1 4.9377 1.0296 1.3056 45 1 3.4803 -0.0001 1.3912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429703011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:53 Heat of formation + Delta-G solvation = -9.686918 kcal Electronic energy + Delta-G solvation = -20433.232825 eV Core-core repulsion = 17677.886986 eV Total energy + Delta-G solvation = -2755.345839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02750 -38.34469 -35.36680 -33.86315 -32.67994 -30.52221 -30.19099 -29.07824 -27.54801 -25.25754 -24.02370 -23.46951 -22.74297 -20.27996 -19.94991 -18.36716 -17.37014 -17.16930 -16.47065 -16.35136 -15.76109 -15.32765 -14.99989 -14.92796 -14.54624 -14.20065 -13.66937 -13.52073 -13.30952 -13.21688 -13.04237 -12.80845 -12.67565 -12.56100 -12.54210 -12.41143 -12.31971 -12.19869 -12.04506 -11.94329 -11.73623 -11.33548 -11.30134 -11.14589 -11.02515 -10.49325 -9.21014 -8.96221 -8.11268 -6.16333 1.39768 1.42631 1.50149 2.45926 2.94334 3.17461 3.30033 3.76721 3.85490 4.02503 4.16011 4.23082 4.32028 4.35379 4.38361 4.45788 4.50570 4.53475 4.58802 4.63254 4.67248 4.79756 4.84311 4.92346 4.98949 5.05667 5.09846 5.11943 5.15888 5.18417 5.24591 5.26814 5.35738 5.37654 5.44710 5.45813 5.68087 5.87274 6.15811 6.21508 6.29847 6.34870 6.49999 6.96559 7.49395 9.00608 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.006166 C = 0.005250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.659425 B = 4540.223951 C = 5332.429265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.525 5.525 4 C 0.040 3.960 5 C -0.139 4.139 6 C 0.084 3.916 7 H 0.101 0.899 8 C -0.106 4.106 9 C 0.035 3.965 10 N -0.507 5.507 11 C 0.085 3.915 12 H 0.056 0.944 13 C -0.173 4.173 14 C 0.041 3.959 15 C -0.501 4.501 16 H 0.053 0.947 17 C -0.003 4.003 18 N -0.939 5.939 19 Si 0.955 3.045 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.271 1.271 23 C 0.004 3.996 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.058 0.942 41 H -0.005 1.005 42 H -0.010 1.010 43 H 0.259 0.741 44 H 0.048 0.952 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.031 15.977 4.213 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 N -0.248 5.248 4 C -0.087 4.087 5 C -0.197 4.197 6 C -0.026 4.026 7 H 0.119 0.881 8 C -0.144 4.144 9 C -0.093 4.093 10 N -0.230 5.230 11 C -0.024 4.024 12 H 0.074 0.926 13 C -0.232 4.232 14 C 0.004 3.996 15 C -0.539 4.539 16 H 0.071 0.929 17 C -0.199 4.199 18 N -0.581 5.581 19 Si 0.781 3.219 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.125 4.125 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.013 0.987 42 H 0.008 0.992 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.506 15.632 3.699 19.760 hybrid contribution 0.962 -1.099 0.659 1.603 sum -10.544 14.533 4.359 18.477 Atomic orbital electron populations 1.21759 0.93717 1.01754 1.02483 1.22063 0.96315 0.89081 1.00553 1.62359 1.11984 1.15571 1.34915 1.22233 1.01207 0.95563 0.89725 1.21718 1.01884 0.93852 1.02240 1.22574 0.87348 0.98524 0.94144 0.88145 1.22525 0.96247 0.99196 0.96431 1.23201 0.97691 0.96377 0.92074 1.64804 1.21160 1.34572 1.02492 1.21720 0.88389 0.94723 0.97546 0.92563 1.22380 1.00101 0.98875 1.01806 1.18958 0.94070 0.92559 0.94026 1.21412 1.06980 0.96329 1.29193 0.92853 1.25830 0.96730 1.01825 0.95524 1.70082 1.26011 1.27494 1.34521 0.85650 0.79181 0.78810 0.78249 1.19772 1.21099 1.19572 1.23577 0.98163 0.93478 0.97294 0.92249 0.91884 0.91899 0.95776 0.91795 0.89890 0.95384 0.91182 0.93068 0.92045 0.91283 0.89255 0.92798 0.92961 0.92699 0.91382 0.92333 0.98707 0.99159 0.93226 0.93411 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.88 71.98 0.71 -2.22 16 2 C 0.05 1.26 4.81 86.30 0.42 1.67 16 3 N -0.52 -12.39 4.45 -865.84 -3.85 -16.24 16 4 C 0.04 0.79 5.40 86.30 0.47 1.25 16 5 C -0.14 -2.22 9.99 71.98 0.72 -1.50 16 6 C 0.08 2.12 2.94 45.80 0.13 2.25 16 7 H 0.10 2.23 6.45 -2.39 -0.02 2.21 16 8 C -0.11 -2.95 6.49 31.80 0.21 -2.74 16 9 C 0.03 1.21 5.53 86.65 0.48 1.69 16 10 N -0.51 -19.37 4.97 -857.83 -4.26 -23.63 16 11 C 0.09 3.55 2.24 44.92 0.10 3.66 16 12 H 0.06 2.44 8.12 -2.39 -0.02 2.42 16 13 C -0.17 -5.84 8.20 71.98 0.59 -5.25 16 14 C 0.04 2.19 4.43 29.85 0.13 2.32 16 15 C -0.50 -29.09 8.84 25.60 0.23 -28.87 16 16 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 18 N -0.94 -58.38 13.29 21.45 0.28 -58.10 16 19 Si 0.96 46.20 29.54 68.60 2.03 48.22 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 23 C 0.00 0.13 4.94 86.45 0.43 0.56 16 24 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.06 1.15 6.28 -2.39 -0.01 1.14 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.02 0.72 6.29 -2.38 -0.01 0.70 16 28 H 0.06 1.98 6.02 -2.39 -0.01 1.96 16 29 H 0.08 1.49 5.94 -2.39 -0.01 1.47 16 30 H 0.03 0.59 7.02 -2.39 -0.02 0.57 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.84 6.60 -2.39 -0.02 0.82 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 2.09 6.08 -2.38 -0.01 2.08 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 1.76 5.53 -2.39 -0.01 1.74 16 37 H 0.05 2.16 7.61 -2.39 -0.02 2.14 16 38 H 0.05 1.86 6.47 -2.39 -0.02 1.85 16 39 H 0.07 1.94 6.14 -2.38 -0.01 1.93 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H -0.01 -0.31 7.01 -2.39 -0.02 -0.33 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.05 1.37 5.89 -2.39 -0.01 1.35 16 45 H 0.06 2.06 5.33 -2.38 -0.01 2.05 16 Total: -1.00 -64.32 328.54 0.21 -64.11 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.95 Total: 12.54 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 5.07 Total: -26.89 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -7.83 Total: -97.97 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -64.32 0.21 -64.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429703011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.419 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds