Wall clock time and date at job start Sun Mar 29 2020 23:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09011 * 109.53706 * 2 1 4 4 C 1.53123 * 109.50610 * 239.90364 * 2 1 3 5 5 C 1.53114 * 109.16198 * 182.40446 * 4 2 1 6 6 C 1.53032 * 109.28141 * 57.65126 * 5 4 2 7 7 N 1.46844 * 109.52527 * 300.82107 * 6 5 4 8 8 C 1.46904 * 111.00328 * 185.83771 * 7 6 5 9 9 C 1.53002 * 109.46849 * 45.78983 * 8 7 6 10 10 C 1.53002 * 109.46729 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46729 * 180.02562 * 10 9 8 12 12 N 1.46904 * 109.46849 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99688 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46899 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99497 * 359.97438 * 14 13 12 16 16 C 1.37869 * 119.99752 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00062 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00369 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47373 * 89.99728 * 18 16 14 20 20 H 1.48498 * 109.47022 * 209.99949 * 18 16 14 21 21 H 1.48502 * 109.47150 * 329.99729 * 18 16 14 22 22 C 1.46846 * 111.19783 * 61.73901 * 7 6 5 23 23 H 1.09001 * 109.47455 * 299.90093 * 1 2 3 24 24 H 1.08996 * 109.47651 * 59.90011 * 1 2 3 25 25 H 1.08995 * 109.47254 * 179.90216 * 1 2 3 26 26 H 1.09000 * 109.52219 * 62.49616 * 4 2 1 27 27 H 1.09001 * 109.57074 * 302.34392 * 4 2 1 28 28 H 1.09000 * 109.50493 * 297.71120 * 5 4 2 29 29 H 1.08996 * 109.50191 * 177.59676 * 5 4 2 30 30 H 1.09000 * 109.46311 * 180.80335 * 6 5 4 31 31 H 1.09008 * 109.45233 * 60.83074 * 6 5 4 32 32 H 1.08993 * 109.47215 * 165.79453 * 8 7 6 33 33 H 1.09003 * 109.46551 * 285.79090 * 8 7 6 34 34 H 1.09001 * 109.47001 * 300.00024 * 9 8 7 35 35 H 1.08992 * 109.47207 * 60.00241 * 9 8 7 36 36 H 1.09001 * 109.47011 * 299.99542 * 10 9 8 37 37 H 1.08992 * 109.47467 * 59.99926 * 10 9 8 38 38 H 1.08992 * 109.47078 * 299.99738 * 11 10 9 39 39 H 1.09004 * 109.46885 * 59.99691 * 11 10 9 40 40 H 1.00895 * 110.99944 * 303.95037 * 12 11 10 41 41 H 1.09005 * 109.46764 * 299.99868 * 13 12 11 42 42 H 1.08994 * 109.47047 * 60.00388 * 13 12 11 43 43 H 0.96997 * 120.00254 * 179.97438 * 17 16 14 44 44 H 1.09008 * 109.46456 * 58.27625 * 22 7 6 45 45 H 1.09003 * 109.46474 * 178.24130 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5711 -0.7719 -1.2107 6 6 4.0229 -1.4729 0.0724 7 7 3.5093 -0.7420 1.2378 8 6 4.0373 -1.3057 2.4874 9 6 5.5425 -1.5404 2.3451 10 6 6.0922 -2.1281 3.6464 11 6 7.5976 -2.3621 3.5042 12 7 8.1256 -2.9258 4.7538 13 6 9.5718 -3.1637 4.6543 14 6 10.0763 -3.7413 5.9516 15 1 9.3912 -3.9140 6.7683 16 6 11.4124 -4.0493 6.0955 17 7 11.8529 -4.5529 7.2278 18 14 12.5975 -3.7500 4.6830 19 1 13.1576 -2.3787 4.7888 20 1 13.7012 -4.7416 4.7443 21 1 11.8759 -3.8917 3.3929 22 6 2.0410 -0.7234 1.2480 23 1 -0.3634 0.5123 0.8909 24 1 -0.3634 0.5153 -0.8890 25 1 -0.3633 -1.0276 -0.0018 26 1 1.7156 -0.1870 -2.1398 27 1 1.6452 -1.7391 -1.2701 28 1 3.9677 0.2432 -1.2298 29 1 3.9394 -1.3233 -2.0758 30 1 5.1120 -1.4961 0.1093 31 1 3.6373 -2.4924 0.0841 32 1 3.8538 -0.6099 3.3060 33 1 3.5401 -2.2528 2.6973 34 1 5.7259 -2.2363 1.5265 35 1 6.0395 -0.5934 2.1352 36 1 5.9088 -1.4324 4.4652 37 1 5.5951 -3.0751 3.8559 38 1 7.7814 -3.0575 2.6853 39 1 8.0944 -1.4147 3.2949 40 1 7.9108 -2.3294 5.5387 41 1 9.7697 -3.8648 3.8434 42 1 10.0819 -2.2218 4.4528 43 1 12.7928 -4.7700 7.3290 44 1 1.6647 -1.7464 1.2544 45 1 1.6905 -0.2022 2.1389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565887001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:23 Heat of formation + Delta-G solvation = -25.256451 kcal Electronic energy + Delta-G solvation = -18599.074987 eV Core-core repulsion = 15843.054003 eV Total energy + Delta-G solvation = -2756.020984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.57101 -36.53926 -35.07961 -32.99225 -32.22853 -31.68620 -28.47191 -26.86262 -26.09463 -23.80458 -22.79981 -21.35101 -21.07987 -20.27880 -19.92779 -16.77910 -16.16433 -15.82294 -15.44317 -14.95386 -14.65019 -14.42780 -14.34443 -13.87636 -13.64480 -13.37982 -12.88855 -12.76391 -12.52291 -12.29050 -12.20278 -12.17145 -11.63527 -11.43216 -11.30919 -11.25545 -10.99014 -10.90133 -10.71372 -10.58059 -10.49042 -10.28130 -10.15507 -9.75799 -9.26514 -8.58987 -8.48304 -7.45864 -6.04938 -4.02799 3.29212 3.36502 3.39783 3.65556 4.40120 4.43001 4.54118 4.56281 4.76470 4.88329 4.98551 5.07887 5.16301 5.18678 5.23914 5.28106 5.31145 5.37786 5.42288 5.46638 5.49277 5.55558 5.62777 5.70839 5.76829 5.79024 5.82403 5.87131 5.95513 5.96277 6.09160 6.11468 6.14879 6.45302 6.51794 6.80579 6.91343 6.92879 7.03433 7.62865 7.91990 8.36574 8.66898 9.03033 9.57116 11.08401 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.053212 B = 0.002743 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.073190 B =10207.041786 C =10617.502563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.047 3.953 7 N -0.540 5.540 8 C 0.057 3.943 9 C -0.121 4.121 10 C -0.114 4.114 11 C 0.057 3.943 12 N -0.683 5.683 13 C 0.163 3.837 14 C -0.516 4.516 15 H 0.079 0.921 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.061 3.939 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.334 0.666 41 H 0.025 0.975 42 H -0.021 1.021 43 H 0.264 0.736 44 H 0.031 0.969 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.404 9.593 -17.126 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.081 4.081 7 N -0.264 5.264 8 C -0.070 4.070 9 C -0.159 4.159 10 C -0.153 4.153 11 C -0.073 4.073 12 N -0.313 5.313 13 C 0.036 3.964 14 C -0.554 4.554 15 H 0.097 0.903 16 C -0.135 4.135 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.192 1.192 22 C -0.067 4.067 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.151 0.849 41 H 0.043 0.957 42 H -0.003 1.003 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.230 9.346 -17.232 28.897 hybrid contribution 0.831 0.141 -0.525 0.993 sum -20.399 9.487 -17.757 28.661 Atomic orbital electron populations 1.21798 0.95072 1.01758 1.01819 1.21168 0.94971 1.00370 0.94368 0.90370 1.21649 0.95811 1.00339 0.97587 1.21599 0.95620 1.01624 0.96755 1.22234 1.00840 0.94847 0.90162 1.61982 1.07638 1.54298 1.02508 1.22149 0.95365 0.97904 0.91630 1.21719 0.94253 1.01472 0.98440 1.21524 0.96056 1.01092 0.96609 1.21916 0.93705 0.97062 0.94594 1.60495 1.16743 1.50806 1.03249 1.20006 0.83524 0.94450 0.98470 1.21080 0.94122 1.41606 0.98599 0.90308 1.24921 0.98125 0.94780 0.95630 1.69903 1.15291 1.43998 1.24794 0.86799 0.80959 0.78167 0.83426 1.20337 1.21136 1.19185 1.22129 0.87448 0.98808 0.98351 0.92551 0.92504 0.92830 0.91953 0.92372 0.91126 0.91620 0.89768 0.95088 0.90632 0.94846 0.91729 0.91260 0.92179 0.91345 0.91983 0.96428 0.84867 0.95655 1.00346 0.92658 0.95051 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.20 37.15 0.34 -0.57 16 2 C -0.09 -0.68 2.88 -90.54 -0.26 -0.94 16 3 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 4 C -0.12 -0.86 5.29 -26.61 -0.14 -1.00 16 5 C -0.12 -0.95 6.09 -26.66 -0.16 -1.12 16 6 C 0.05 0.44 4.85 -3.84 -0.02 0.43 16 7 N -0.54 -5.46 4.81 -234.67 -1.13 -6.58 16 8 C 0.06 0.60 5.27 -3.82 -0.02 0.58 16 9 C -0.12 -1.37 4.46 -26.73 -0.12 -1.49 16 10 C -0.11 -1.55 5.47 -26.73 -0.15 -1.69 16 11 C 0.06 0.98 5.69 -3.82 -0.02 0.95 16 12 N -0.68 -14.57 6.49 -115.05 -0.75 -15.32 16 13 C 0.16 4.10 4.51 -4.97 -0.02 4.08 16 14 C -0.52 -15.12 9.87 -34.44 -0.34 -15.46 16 15 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 18 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 C 0.06 0.53 4.71 -3.84 -0.02 0.52 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.82 5.81 -51.93 -0.30 0.52 16 31 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.06 0.72 6.21 -51.93 -0.32 0.40 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.33 6.87 8.72 -39.29 -0.34 6.52 16 41 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 42 H -0.02 -0.52 7.57 -51.93 -0.39 -0.92 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.03 0.29 8.14 -51.92 -0.42 -0.14 16 45 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -30.72 345.59 -10.52 -41.24 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.93 Total: -0.71 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.03 Total: -13.83 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -1.10 Total: -49.20 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.72 -10.52 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565887001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.979 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds