Wall clock time and date at job start Sun Mar 29 2020 23:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09011 * 109.53706 * 2 1 4 4 C 1.53123 * 109.50610 * 239.90364 * 2 1 3 5 5 C 1.53114 * 109.16198 * 182.40446 * 4 2 1 6 6 C 1.53032 * 109.28141 * 57.65126 * 5 4 2 7 7 N 1.46844 * 109.52527 * 300.82107 * 6 5 4 8 8 C 1.46904 * 111.00328 * 185.83771 * 7 6 5 9 9 C 1.53002 * 109.46849 * 45.78983 * 8 7 6 10 10 C 1.53002 * 109.46729 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46729 * 180.02562 * 10 9 8 12 12 N 1.46904 * 109.46849 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99688 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.46899 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99497 * 359.97438 * 14 13 12 16 16 C 1.37869 * 119.99752 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00062 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00369 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47373 * 89.99728 * 18 16 14 20 20 H 1.48498 * 109.47022 * 209.99949 * 18 16 14 21 21 H 1.48502 * 109.47150 * 329.99729 * 18 16 14 22 22 C 1.46846 * 111.19783 * 61.73901 * 7 6 5 23 23 H 1.09001 * 109.47455 * 299.90093 * 1 2 3 24 24 H 1.08996 * 109.47651 * 59.90011 * 1 2 3 25 25 H 1.08995 * 109.47254 * 179.90216 * 1 2 3 26 26 H 1.09000 * 109.52219 * 62.49616 * 4 2 1 27 27 H 1.09001 * 109.57074 * 302.34392 * 4 2 1 28 28 H 1.09000 * 109.50493 * 297.71120 * 5 4 2 29 29 H 1.08996 * 109.50191 * 177.59676 * 5 4 2 30 30 H 1.09000 * 109.46311 * 180.80335 * 6 5 4 31 31 H 1.09008 * 109.45233 * 60.83074 * 6 5 4 32 32 H 1.08993 * 109.47215 * 165.79453 * 8 7 6 33 33 H 1.09003 * 109.46551 * 285.79090 * 8 7 6 34 34 H 1.09001 * 109.47001 * 300.00024 * 9 8 7 35 35 H 1.08992 * 109.47207 * 60.00241 * 9 8 7 36 36 H 1.09001 * 109.47011 * 299.99542 * 10 9 8 37 37 H 1.08992 * 109.47467 * 59.99926 * 10 9 8 38 38 H 1.08992 * 109.47078 * 299.99738 * 11 10 9 39 39 H 1.09004 * 109.46885 * 59.99691 * 11 10 9 40 40 H 1.00895 * 110.99944 * 303.95037 * 12 11 10 41 41 H 1.09005 * 109.46764 * 299.99868 * 13 12 11 42 42 H 1.08994 * 109.47047 * 60.00388 * 13 12 11 43 43 H 0.96997 * 120.00254 * 179.97438 * 17 16 14 44 44 H 1.09008 * 109.46456 * 58.27625 * 22 7 6 45 45 H 1.09003 * 109.46474 * 178.24130 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5711 -0.7719 -1.2107 6 6 4.0229 -1.4729 0.0724 7 7 3.5093 -0.7420 1.2378 8 6 4.0373 -1.3057 2.4874 9 6 5.5425 -1.5404 2.3451 10 6 6.0922 -2.1281 3.6464 11 6 7.5976 -2.3621 3.5042 12 7 8.1256 -2.9258 4.7538 13 6 9.5718 -3.1637 4.6543 14 6 10.0763 -3.7413 5.9516 15 1 9.3912 -3.9140 6.7683 16 6 11.4124 -4.0493 6.0955 17 7 11.8529 -4.5529 7.2278 18 14 12.5975 -3.7500 4.6830 19 1 13.1576 -2.3787 4.7888 20 1 13.7012 -4.7416 4.7443 21 1 11.8759 -3.8917 3.3929 22 6 2.0410 -0.7234 1.2480 23 1 -0.3634 0.5123 0.8909 24 1 -0.3634 0.5153 -0.8890 25 1 -0.3633 -1.0276 -0.0018 26 1 1.7156 -0.1870 -2.1398 27 1 1.6452 -1.7391 -1.2701 28 1 3.9677 0.2432 -1.2298 29 1 3.9394 -1.3233 -2.0758 30 1 5.1120 -1.4961 0.1093 31 1 3.6373 -2.4924 0.0841 32 1 3.8538 -0.6099 3.3060 33 1 3.5401 -2.2528 2.6973 34 1 5.7259 -2.2363 1.5265 35 1 6.0395 -0.5934 2.1352 36 1 5.9088 -1.4324 4.4652 37 1 5.5951 -3.0751 3.8559 38 1 7.7814 -3.0575 2.6853 39 1 8.0944 -1.4147 3.2949 40 1 7.9108 -2.3294 5.5387 41 1 9.7697 -3.8648 3.8434 42 1 10.0819 -2.2218 4.4528 43 1 12.7928 -4.7700 7.3290 44 1 1.6647 -1.7464 1.2544 45 1 1.6905 -0.2022 2.1389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565887001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:22 Heat of formation + Delta-G solvation = -45.637473 kcal Electronic energy + Delta-G solvation = -18599.958774 eV Core-core repulsion = 15843.054003 eV Total energy + Delta-G solvation = -2756.904772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28313 -37.86861 -36.20771 -34.75077 -33.34142 -32.74024 -30.01574 -27.71663 -27.29832 -24.87947 -23.52325 -23.05383 -22.46339 -21.16516 -20.58402 -18.96461 -17.12318 -16.89144 -16.48639 -16.18301 -15.95984 -15.45416 -15.27151 -15.01758 -14.93271 -14.50413 -14.31786 -13.88478 -13.71785 -13.33904 -13.22189 -13.14060 -12.80972 -12.71233 -12.44963 -12.27642 -12.07908 -11.93376 -11.86560 -11.75725 -11.63361 -11.47348 -11.38101 -11.11031 -11.03267 -10.83467 -9.25910 -9.17191 -8.32009 -6.37005 1.33538 1.35838 1.47397 2.32820 2.88883 3.01611 3.50135 3.79709 3.87108 3.93701 4.04652 4.06079 4.22427 4.37044 4.42187 4.43933 4.51254 4.56067 4.63981 4.71103 4.72564 4.76527 4.80759 4.82978 4.85889 4.92953 4.97164 5.00324 5.05899 5.10857 5.13941 5.22794 5.30350 5.34649 5.37594 5.40916 5.51078 5.53657 5.94450 6.14435 6.18898 6.54348 6.64325 6.75241 7.28184 8.84744 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.053212 B = 0.002743 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.073190 B =10207.041786 C =10617.502563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.116 4.116 6 C 0.045 3.955 7 N -0.548 5.548 8 C 0.061 3.939 9 C -0.109 4.109 10 C -0.103 4.103 11 C 0.058 3.942 12 N -0.694 5.694 13 C 0.174 3.826 14 C -0.531 4.531 15 H 0.037 0.963 16 C 0.006 3.994 17 N -0.947 5.947 18 Si 0.954 3.046 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.251 1.251 22 C 0.059 3.941 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.337 0.663 41 H 0.024 0.976 42 H -0.014 1.014 43 H 0.268 0.732 44 H 0.028 0.972 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.843 10.573 -19.415 31.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.083 4.083 7 N -0.272 5.272 8 C -0.067 4.067 9 C -0.148 4.148 10 C -0.142 4.142 11 C -0.072 4.072 12 N -0.325 5.325 13 C 0.045 3.955 14 C -0.569 4.569 15 H 0.055 0.945 16 C -0.192 4.192 17 N -0.587 5.587 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.175 1.175 22 C -0.068 4.068 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.154 0.846 41 H 0.042 0.958 42 H 0.003 0.997 43 H 0.077 0.923 44 H 0.046 0.954 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.701 10.337 -19.530 30.971 hybrid contribution 0.891 -0.179 0.264 0.946 sum -20.810 10.159 -19.266 30.124 Atomic orbital electron populations 1.21766 0.93944 1.01978 1.02392 1.21152 0.95883 0.99741 0.93868 0.91017 1.21647 0.95245 1.00426 0.97908 1.21593 0.96174 1.01276 0.96362 1.22268 1.00613 0.94757 0.90639 1.62015 1.08457 1.54324 1.02415 1.22070 0.94633 0.97881 0.92113 1.21590 0.94779 1.01263 0.97120 1.21409 0.93590 1.01141 0.98057 1.22016 0.95702 0.97045 0.92412 1.60404 1.14589 1.52105 1.05353 1.19760 0.85743 0.94198 0.95811 1.21357 0.94014 1.42108 0.99445 0.94488 1.25926 1.00247 0.94260 0.98734 1.70054 1.16109 1.45228 1.27320 0.85615 0.78201 0.78625 0.79864 1.19005 1.20432 1.17488 1.22184 0.86685 0.98801 0.99171 0.92285 0.91667 0.92764 0.90858 0.92439 0.91585 0.90614 0.90137 0.95559 0.90462 0.95121 0.91458 0.91263 0.91703 0.91908 0.91969 0.95697 0.84604 0.95802 0.99673 0.92274 0.95412 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.20 71.98 0.66 -0.86 16 2 C -0.09 -1.19 2.88 -10.74 -0.03 -1.23 16 3 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 4 C -0.11 -1.48 5.29 30.67 0.16 -1.32 16 5 C -0.12 -1.69 6.09 30.64 0.19 -1.50 16 6 C 0.04 0.79 4.85 86.32 0.42 1.21 16 7 N -0.55 -10.35 4.81 -896.35 -4.31 -14.65 16 8 C 0.06 1.19 5.27 86.30 0.46 1.64 16 9 C -0.11 -2.31 4.46 30.60 0.14 -2.17 16 10 C -0.10 -2.65 5.47 30.60 0.17 -2.49 16 11 C 0.06 1.87 5.69 86.30 0.49 2.36 16 12 N -0.69 -29.24 6.49 -517.91 -3.36 -32.60 16 13 C 0.17 8.57 4.51 85.56 0.39 8.95 16 14 C -0.53 -31.64 9.87 25.60 0.25 -31.39 16 15 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 16 C 0.01 0.35 5.47 84.65 0.46 0.81 16 17 N -0.95 -60.03 13.96 21.44 0.30 -59.73 16 18 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 22 C 0.06 0.97 4.71 86.33 0.41 1.38 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.45 5.81 -2.39 -0.01 1.44 16 31 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.07 1.40 6.21 -2.39 -0.01 1.38 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.34 13.80 8.72 -89.70 -0.78 13.02 16 41 H 0.02 1.19 7.20 -2.38 -0.02 1.17 16 42 H -0.01 -0.69 7.57 -2.39 -0.02 -0.71 16 43 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.03 0.47 8.14 -2.38 -0.02 0.46 16 45 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 Total: -1.00 -65.69 345.59 -1.25 -66.94 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.07 Total: 18.02 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 4.16 Total: -24.59 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -7.37 Total: -106.98 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -65.69 -1.25 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565887001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.307 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds