Wall clock time and date at job start Sun Mar 29 2020 23:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50788 * 2 1 4 4 C 1.53120 * 109.50505 * 120.07856 * 2 1 3 5 5 C 1.53119 * 109.16202 * 177.63880 * 4 2 1 6 6 C 1.53044 * 109.27589 * 302.34077 * 5 4 2 7 7 N 1.46847 * 109.51335 * 59.18419 * 6 5 4 8 8 C 1.46899 * 110.99862 * 174.15436 * 7 6 5 9 9 C 1.52999 * 109.47036 * 66.05037 * 8 7 6 10 10 C 1.52999 * 109.46926 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46965 * 179.97438 * 10 9 8 12 12 N 1.46907 * 109.47005 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99607 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46616 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99856 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99402 * 180.02562 * 14 13 12 17 17 N 1.31524 * 119.99638 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00518 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47393 * 90.00002 * 18 16 14 20 20 H 1.48497 * 109.47090 * 210.00424 * 18 16 14 21 21 H 1.48498 * 109.46885 * 329.99931 * 18 16 14 22 22 C 1.46847 * 111.20163 * 298.24410 * 7 6 5 23 23 H 1.09004 * 109.47022 * 299.91995 * 1 2 3 24 24 H 1.08993 * 109.47496 * 59.92291 * 1 2 3 25 25 H 1.09008 * 109.46952 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.52850 * 57.72965 * 4 2 1 27 27 H 1.09003 * 109.57279 * 297.56752 * 4 2 1 28 28 H 1.09000 * 109.50507 * 182.40742 * 5 4 2 29 29 H 1.08996 * 109.50916 * 62.28058 * 5 4 2 30 30 H 1.09002 * 109.46396 * 179.19729 * 6 5 4 31 31 H 1.08994 * 109.46485 * 299.17654 * 6 5 4 32 32 H 1.09004 * 109.46859 * 186.04870 * 8 7 6 33 33 H 1.08996 * 109.47621 * 306.04495 * 8 7 6 34 34 H 1.08999 * 109.46741 * 299.99794 * 9 8 7 35 35 H 1.08997 * 109.47402 * 59.99850 * 9 8 7 36 36 H 1.08999 * 109.47343 * 299.99549 * 10 9 8 37 37 H 1.08996 * 109.47800 * 60.00057 * 10 9 8 38 38 H 1.08999 * 109.46834 * 299.99998 * 11 10 9 39 39 H 1.08997 * 109.46747 * 60.00076 * 11 10 9 40 40 H 1.00896 * 110.99839 * 56.04729 * 12 11 10 41 41 H 1.08999 * 109.46896 * 299.99820 * 13 12 11 42 42 H 1.08994 * 109.46980 * 60.00284 * 13 12 11 43 43 H 0.97000 * 119.99912 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.46836 * 301.74653 * 22 7 6 45 45 H 1.08994 * 109.46332 * 181.76669 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7705 1.2115 6 6 4.0238 -1.4716 -0.0714 7 7 3.5101 -0.7410 -1.2370 8 6 4.0388 -1.3044 -2.4864 9 6 3.4953 -2.7218 -2.6768 10 6 4.0455 -3.3084 -3.9784 11 6 3.5024 -4.7262 -4.1685 12 7 4.0302 -5.2891 -5.4186 13 6 3.5284 -6.6527 -5.6350 14 6 4.0904 -7.1962 -6.9233 15 1 4.7536 -6.5892 -7.5217 16 6 3.7569 -8.4679 -7.3386 17 7 4.2470 -8.9421 -8.4632 18 14 2.6092 -9.5176 -6.3039 19 1 1.2055 -9.2800 -6.7263 20 1 2.9465 -10.9516 -6.4909 21 1 2.7634 -9.1555 -4.8721 22 6 2.0417 -0.7233 -1.2478 23 1 -0.3633 0.5126 0.8907 24 1 -0.3634 0.5150 -0.8892 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6459 -1.7389 1.2693 27 1 1.7151 -0.1876 2.1405 28 1 3.9396 -1.3218 2.0767 29 1 3.9673 0.2447 1.2305 30 1 5.1130 -1.4942 -0.1081 31 1 3.6388 -2.4912 -0.0834 32 1 3.7298 -0.6810 -3.3255 33 1 5.1273 -1.3359 -2.4388 34 1 3.8043 -3.3452 -1.8378 35 1 2.4068 -2.6903 -2.7245 36 1 3.7361 -2.6850 -4.8173 37 1 5.1339 -3.3400 -3.9313 38 1 3.8122 -5.3494 -3.3296 39 1 2.4139 -4.6950 -4.2156 40 1 5.0389 -5.2692 -5.4266 41 1 3.8383 -7.2896 -4.8065 42 1 2.4401 -6.6345 -5.6919 43 1 4.0127 -9.8370 -8.7552 44 1 1.6661 -1.7466 -1.2540 45 1 1.6913 -0.2025 -2.1388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565887002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:25 Heat of formation + Delta-G solvation = -27.586095 kcal Electronic energy + Delta-G solvation = -18819.181494 eV Core-core repulsion = 16063.059488 eV Total energy + Delta-G solvation = -2756.122005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.67033 -36.50079 -35.06655 -33.02746 -32.29933 -31.46871 -28.29197 -26.89621 -26.11483 -24.06761 -22.46130 -21.39698 -21.17059 -20.94615 -19.46651 -16.79015 -15.99514 -15.86912 -15.31250 -14.88293 -14.72642 -14.57105 -14.31568 -13.80999 -13.59959 -13.35623 -12.93445 -12.79819 -12.43896 -12.29575 -12.18974 -12.08040 -11.85436 -11.48607 -11.36107 -11.11674 -10.94271 -10.90605 -10.62891 -10.60394 -10.50441 -10.40394 -10.28950 -9.82497 -9.29631 -8.59363 -8.40111 -7.46854 -6.06398 -4.04333 3.28143 3.34998 3.37662 3.72305 4.41435 4.43581 4.56339 4.59331 4.76768 4.81668 4.95080 5.10513 5.17606 5.18839 5.26141 5.27184 5.33870 5.38998 5.46219 5.46901 5.50978 5.56081 5.64611 5.72629 5.77185 5.82554 5.83840 5.86924 5.92314 5.97595 6.02211 6.11403 6.17027 6.41983 6.48679 6.78079 6.91644 6.92360 7.02185 7.60326 7.89993 8.34337 8.65195 9.01602 9.55599 11.06939 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.003056 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.312460 B = 9159.347397 C = 9432.504845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.117 4.117 5 C -0.117 4.117 6 C 0.051 3.949 7 N -0.538 5.538 8 C 0.055 3.945 9 C -0.155 4.155 10 C -0.111 4.111 11 C 0.057 3.943 12 N -0.683 5.683 13 C 0.164 3.836 14 C -0.516 4.516 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.878 3.122 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.056 3.944 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.015 0.985 39 H 0.061 0.939 40 H 0.335 0.665 41 H -0.017 1.017 42 H 0.021 0.979 43 H 0.264 0.736 44 H 0.038 0.962 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.097 18.292 20.481 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.077 4.077 7 N -0.260 5.260 8 C -0.073 4.073 9 C -0.195 4.195 10 C -0.150 4.150 11 C -0.073 4.073 12 N -0.313 5.313 13 C 0.036 3.964 14 C -0.555 4.555 15 H 0.097 0.903 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.071 4.071 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.079 0.921 40 H 0.152 0.848 41 H 0.001 0.999 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.421 18.906 20.007 27.879 hybrid contribution -0.419 -2.133 1.006 2.396 sum -4.840 16.773 21.013 27.319 Atomic orbital electron populations 1.21804 0.95045 1.01880 1.01792 1.21171 0.95048 1.00240 0.94410 0.90515 1.21648 0.95665 1.00478 0.97639 1.21589 0.95777 1.01465 0.96679 1.22112 0.99859 0.95386 0.90333 1.62179 1.08029 1.53436 1.02396 1.22244 0.99968 0.93431 0.91614 1.22221 1.01208 0.97437 0.98609 1.21479 1.00229 0.96586 0.96676 1.21933 0.99748 0.94083 0.91551 1.60472 1.13597 1.24544 1.32672 1.19993 0.95707 0.84354 0.96374 1.21079 1.29518 0.99695 1.05170 0.90277 1.24918 0.95951 0.97584 0.94941 1.69906 1.44875 1.17516 1.21654 0.86809 0.81624 0.79741 0.81260 1.20114 1.21155 1.19341 1.22172 0.87532 0.99214 0.98231 0.92567 0.92494 0.92742 0.92293 0.91969 0.91696 0.91223 0.90867 0.94563 0.90480 0.90674 0.92236 0.91827 0.91097 0.92263 0.96700 0.92064 0.84826 0.99949 0.96107 0.92637 0.94337 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.09 -0.72 2.88 -90.54 -0.26 -0.98 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.12 -0.89 5.29 -26.61 -0.14 -1.03 16 5 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 6 C 0.05 0.47 5.05 -3.83 -0.02 0.45 16 7 N -0.54 -5.30 4.86 -234.67 -1.14 -6.44 16 8 C 0.06 0.56 5.36 -3.83 -0.02 0.54 16 9 C -0.16 -1.75 4.52 -26.73 -0.12 -1.87 16 10 C -0.11 -1.50 5.48 -26.73 -0.15 -1.65 16 11 C 0.06 0.98 5.69 -3.82 -0.02 0.96 16 12 N -0.68 -14.61 6.49 -115.05 -0.75 -15.36 16 13 C 0.16 4.12 4.51 -4.97 -0.02 4.09 16 14 C -0.52 -15.15 9.87 -34.44 -0.34 -15.49 16 15 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 18 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 22 C 0.06 0.52 4.12 -3.83 -0.02 0.51 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.04 0.36 6.75 -51.93 -0.35 0.01 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 34 H 0.06 0.69 6.68 -51.93 -0.35 0.34 16 35 H 0.06 0.74 6.50 -51.93 -0.34 0.40 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.33 6.89 8.72 -39.29 -0.34 6.55 16 41 H -0.02 -0.43 7.20 -51.93 -0.37 -0.81 16 42 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.04 0.39 6.61 -51.93 -0.34 0.04 16 45 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -30.68 343.54 -10.46 -41.15 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.83 Total: -0.21 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.03 Total: -14.32 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -1.11 Total: -49.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.68 -10.46 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565887002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.563 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds