Wall clock time and date at job start Sun Mar 29 2020 23:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50788 * 2 1 4 4 C 1.53120 * 109.50505 * 120.07856 * 2 1 3 5 5 C 1.53119 * 109.16202 * 177.63880 * 4 2 1 6 6 C 1.53044 * 109.27589 * 302.34077 * 5 4 2 7 7 N 1.46847 * 109.51335 * 59.18419 * 6 5 4 8 8 C 1.46899 * 110.99862 * 174.15436 * 7 6 5 9 9 C 1.52999 * 109.47036 * 66.05037 * 8 7 6 10 10 C 1.52999 * 109.46926 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46965 * 179.97438 * 10 9 8 12 12 N 1.46907 * 109.47005 * 179.97438 * 11 10 9 13 13 C 1.46902 * 110.99607 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46616 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99856 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99402 * 180.02562 * 14 13 12 17 17 N 1.31524 * 119.99638 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00518 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47393 * 90.00002 * 18 16 14 20 20 H 1.48497 * 109.47090 * 210.00424 * 18 16 14 21 21 H 1.48498 * 109.46885 * 329.99931 * 18 16 14 22 22 C 1.46847 * 111.20163 * 298.24410 * 7 6 5 23 23 H 1.09004 * 109.47022 * 299.91995 * 1 2 3 24 24 H 1.08993 * 109.47496 * 59.92291 * 1 2 3 25 25 H 1.09008 * 109.46952 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.52850 * 57.72965 * 4 2 1 27 27 H 1.09003 * 109.57279 * 297.56752 * 4 2 1 28 28 H 1.09000 * 109.50507 * 182.40742 * 5 4 2 29 29 H 1.08996 * 109.50916 * 62.28058 * 5 4 2 30 30 H 1.09002 * 109.46396 * 179.19729 * 6 5 4 31 31 H 1.08994 * 109.46485 * 299.17654 * 6 5 4 32 32 H 1.09004 * 109.46859 * 186.04870 * 8 7 6 33 33 H 1.08996 * 109.47621 * 306.04495 * 8 7 6 34 34 H 1.08999 * 109.46741 * 299.99794 * 9 8 7 35 35 H 1.08997 * 109.47402 * 59.99850 * 9 8 7 36 36 H 1.08999 * 109.47343 * 299.99549 * 10 9 8 37 37 H 1.08996 * 109.47800 * 60.00057 * 10 9 8 38 38 H 1.08999 * 109.46834 * 299.99998 * 11 10 9 39 39 H 1.08997 * 109.46747 * 60.00076 * 11 10 9 40 40 H 1.00896 * 110.99839 * 56.04729 * 12 11 10 41 41 H 1.08999 * 109.46896 * 299.99820 * 13 12 11 42 42 H 1.08994 * 109.46980 * 60.00284 * 13 12 11 43 43 H 0.97000 * 119.99912 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.46836 * 301.74653 * 22 7 6 45 45 H 1.08994 * 109.46332 * 181.76669 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7705 1.2115 6 6 4.0238 -1.4716 -0.0714 7 7 3.5101 -0.7410 -1.2370 8 6 4.0388 -1.3044 -2.4864 9 6 3.4953 -2.7218 -2.6768 10 6 4.0455 -3.3084 -3.9784 11 6 3.5024 -4.7262 -4.1685 12 7 4.0302 -5.2891 -5.4186 13 6 3.5284 -6.6527 -5.6350 14 6 4.0904 -7.1962 -6.9233 15 1 4.7536 -6.5892 -7.5217 16 6 3.7569 -8.4679 -7.3386 17 7 4.2470 -8.9421 -8.4632 18 14 2.6092 -9.5176 -6.3039 19 1 1.2055 -9.2800 -6.7263 20 1 2.9465 -10.9516 -6.4909 21 1 2.7634 -9.1555 -4.8721 22 6 2.0417 -0.7233 -1.2478 23 1 -0.3633 0.5126 0.8907 24 1 -0.3634 0.5150 -0.8892 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6459 -1.7389 1.2693 27 1 1.7151 -0.1876 2.1405 28 1 3.9396 -1.3218 2.0767 29 1 3.9673 0.2447 1.2305 30 1 5.1130 -1.4942 -0.1081 31 1 3.6388 -2.4912 -0.0834 32 1 3.7298 -0.6810 -3.3255 33 1 5.1273 -1.3359 -2.4388 34 1 3.8043 -3.3452 -1.8378 35 1 2.4068 -2.6903 -2.7245 36 1 3.7361 -2.6850 -4.8173 37 1 5.1339 -3.3400 -3.9313 38 1 3.8122 -5.3494 -3.3296 39 1 2.4139 -4.6950 -4.2156 40 1 5.0389 -5.2692 -5.4266 41 1 3.8383 -7.2896 -4.8065 42 1 2.4401 -6.6345 -5.6919 43 1 4.0127 -9.8370 -8.7552 44 1 1.6661 -1.7466 -1.2540 45 1 1.6913 -0.2025 -2.1388 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565887002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:24 Heat of formation + Delta-G solvation = -48.040453 kcal Electronic energy + Delta-G solvation = -18820.068461 eV Core-core repulsion = 16063.059488 eV Total energy + Delta-G solvation = -2757.008973 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39441 -37.85409 -36.17827 -34.76181 -33.43971 -32.57530 -29.86141 -27.67576 -27.31990 -25.16251 -23.34762 -22.96785 -22.40674 -21.93346 -20.18569 -18.98199 -17.14512 -16.74131 -16.47526 -16.16760 -15.82660 -15.59995 -15.36143 -15.01615 -14.83006 -14.58861 -14.27789 -13.84970 -13.72823 -13.43678 -13.18480 -13.04303 -12.81837 -12.76299 -12.57372 -12.19025 -12.13159 -12.01553 -11.94543 -11.83002 -11.55222 -11.47474 -11.33412 -11.22680 -11.10328 -10.84235 -9.19935 -9.19204 -8.33606 -6.38748 1.32344 1.33895 1.45046 2.31049 2.98047 2.99971 3.43427 3.81139 3.88328 3.93816 3.97492 4.08291 4.19785 4.33102 4.39312 4.44784 4.53124 4.55734 4.64359 4.70383 4.72234 4.73166 4.79955 4.83962 4.88025 4.90376 4.98274 4.99639 5.03328 5.13225 5.14100 5.22635 5.29735 5.31522 5.36135 5.39965 5.48404 5.54128 5.92270 6.15898 6.18770 6.51616 6.61873 6.72919 7.26475 8.83165 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.034419 B = 0.003056 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.312460 B = 9159.347397 C = 9432.504845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.115 4.115 6 C 0.049 3.951 7 N -0.542 5.542 8 C 0.059 3.941 9 C -0.143 4.143 10 C -0.101 4.101 11 C 0.057 3.943 12 N -0.693 5.693 13 C 0.174 3.826 14 C -0.532 4.532 15 H 0.038 0.962 16 C 0.007 3.993 17 N -0.946 5.946 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.253 1.253 22 C 0.056 3.944 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.020 0.980 39 H 0.060 0.940 40 H 0.337 0.663 41 H -0.014 1.014 42 H 0.022 0.978 43 H 0.269 0.731 44 H 0.030 0.970 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.125 18.690 22.703 29.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.079 4.079 7 N -0.265 5.265 8 C -0.069 4.069 9 C -0.182 4.182 10 C -0.139 4.139 11 C -0.072 4.072 12 N -0.324 5.324 13 C 0.045 3.955 14 C -0.570 4.570 15 H 0.056 0.944 16 C -0.190 4.190 17 N -0.586 5.586 18 Si 0.776 3.224 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.177 1.177 22 C -0.072 4.072 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.155 0.845 41 H 0.003 0.997 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.444 19.333 22.244 29.970 hybrid contribution -0.035 -2.186 0.262 2.202 sum -5.480 17.146 22.506 28.819 Atomic orbital electron populations 1.21782 0.94284 1.01830 1.02352 1.21153 0.95669 0.99828 0.93976 0.90826 1.21647 0.95494 1.00298 0.97876 1.21582 0.95923 1.01371 0.96375 1.22167 1.00003 0.95064 0.90663 1.62221 1.08382 1.53425 1.02452 1.22195 1.00171 0.92550 0.91969 1.22097 1.00927 0.98047 0.97141 1.21376 1.00521 0.94259 0.97757 1.22036 0.99665 0.95875 0.89632 1.60388 1.13926 1.22494 1.35543 1.19751 0.95415 0.86188 0.94131 1.21350 1.29227 0.99834 1.06605 0.94403 1.25911 0.97764 0.99086 0.96259 1.70055 1.46564 1.18324 1.23697 0.85627 0.79219 0.77668 0.79871 1.18946 1.20302 1.17696 1.22201 0.87228 0.98872 0.98920 0.91603 0.92384 0.93061 0.92749 0.90840 0.90595 0.91333 0.90629 0.95308 0.90427 0.90264 0.92267 0.92076 0.91491 0.91662 0.96195 0.92187 0.84543 0.99687 0.95977 0.92225 0.95159 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 71.98 0.66 -1.13 16 2 C -0.09 -1.26 2.88 -10.74 -0.03 -1.29 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 4 C -0.12 -1.55 5.29 30.67 0.16 -1.39 16 5 C -0.11 -1.58 6.09 30.65 0.19 -1.40 16 6 C 0.05 0.81 5.05 86.33 0.44 1.25 16 7 N -0.54 -9.91 4.86 -896.35 -4.35 -14.27 16 8 C 0.06 1.10 5.36 86.30 0.46 1.57 16 9 C -0.14 -2.98 4.52 30.59 0.14 -2.84 16 10 C -0.10 -2.57 5.48 30.60 0.17 -2.40 16 11 C 0.06 1.88 5.69 86.30 0.49 2.38 16 12 N -0.69 -29.31 6.49 -517.91 -3.36 -32.67 16 13 C 0.17 8.62 4.51 85.56 0.39 9.01 16 14 C -0.53 -31.73 9.87 25.60 0.25 -31.47 16 15 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 16 C 0.01 0.45 5.47 84.65 0.46 0.91 16 17 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 18 Si 0.95 44.75 27.47 68.60 1.88 46.63 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.25 -11.17 6.54 99.48 0.65 -10.51 16 22 C 0.06 0.96 4.12 86.33 0.36 1.32 16 23 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 31 H 0.03 0.52 6.75 -2.39 -0.02 0.51 16 32 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.42 8.06 -2.39 -0.02 1.40 16 34 H 0.06 1.26 6.68 -2.39 -0.02 1.24 16 35 H 0.06 1.32 6.50 -2.39 -0.02 1.31 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.34 13.86 8.72 -89.70 -0.78 13.08 16 41 H -0.01 -0.71 7.20 -2.39 -0.02 -0.72 16 42 H 0.02 1.09 7.57 -2.39 -0.02 1.08 16 43 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.03 0.57 6.61 -2.38 -0.02 0.56 16 45 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 Total: -1.00 -65.54 343.54 -1.32 -66.86 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.08 Total: 18.58 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 4.13 Total: -25.50 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -7.42 Total: -106.56 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -65.54 -1.32 -66.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565887002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.820 kcal (2) G-P(sol) polarization free energy of solvation -65.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds