Wall clock time and date at job start Sun Mar 29 2020 23:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47166 * 2 1 4 4 C 1.47899 * 111.00380 * 69.87005 * 3 2 1 5 5 C 1.53989 * 107.06058 * 145.84500 * 4 3 2 6 6 C 1.54601 * 105.14024 * 358.77818 * 5 4 3 7 7 H 1.09002 * 110.72317 * 96.57456 * 6 5 4 8 8 C 1.52998 * 110.72755 * 219.68545 * 6 5 4 9 9 N 1.46908 * 109.46783 * 293.54745 * 8 6 5 10 10 C 1.46899 * 110.99708 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47060 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47287 * 304.99830 * 11 10 9 13 13 C 1.52995 * 109.47326 * 64.99575 * 11 10 9 14 14 C 1.52999 * 109.47357 * 184.99838 * 11 10 9 15 15 C 1.50695 * 109.47057 * 174.99908 * 14 11 10 16 16 H 1.07999 * 120.00538 * 359.97438 * 15 14 11 17 17 C 1.37881 * 119.99661 * 179.97438 * 15 14 11 18 18 N 1.31520 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99863 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00044 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00037 * 19 17 15 23 23 C 1.48530 * 111.00095 * 187.27233 * 3 2 1 24 24 H 1.09004 * 109.47186 * 299.99936 * 1 2 3 25 25 H 1.08996 * 109.47396 * 60.00246 * 1 2 3 26 26 H 1.08998 * 109.46643 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47284 * 239.99834 * 2 1 3 28 28 H 1.08996 * 109.47396 * 119.99754 * 2 1 3 29 29 H 1.09004 * 109.91275 * 26.49686 * 4 3 2 30 30 H 1.08994 * 109.92064 * 265.20466 * 4 3 2 31 31 H 1.08996 * 110.31131 * 239.86491 * 5 4 3 32 32 H 1.08995 * 110.31345 * 117.69368 * 5 4 3 33 33 H 1.08993 * 109.47437 * 173.54940 * 8 6 5 34 34 H 1.08996 * 109.47090 * 53.54242 * 8 6 5 35 35 H 1.00901 * 110.99540 * 303.95350 * 9 8 6 36 36 H 1.08997 * 109.47472 * 59.99633 * 10 9 8 37 37 H 1.09006 * 109.46728 * 299.99370 * 10 9 8 38 38 H 1.09000 * 109.47275 * 300.00238 * 13 11 10 39 39 H 1.09000 * 109.47463 * 60.00018 * 13 11 10 40 40 H 1.08998 * 109.47773 * 180.02562 * 13 11 10 41 41 H 1.09002 * 109.46997 * 54.99470 * 14 11 10 42 42 H 1.09000 * 109.46625 * 294.99895 * 14 11 10 43 43 H 0.97001 * 119.99697 * 359.97438 * 18 17 15 44 44 H 1.09001 * 110.67025 * 81.84256 * 23 3 2 45 45 H 1.08999 * 110.67054 * 318.70782 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7484 2.0432 1.2964 5 6 2.9179 3.0077 1.5668 6 6 3.8743 2.8296 0.3653 7 1 3.6957 3.5979 -0.3870 8 6 5.3331 2.8545 0.8260 9 7 5.6635 4.1929 1.3335 10 6 7.0599 4.2546 1.7853 11 6 7.3661 5.6606 2.3051 12 1 7.1259 6.3932 1.5346 13 6 6.5245 5.9378 3.5524 14 6 8.8511 5.7613 2.6593 15 6 9.1783 7.1783 3.0543 16 1 8.4047 7.9318 3.0525 17 6 10.4656 7.5128 3.4180 18 7 11.4077 6.5951 3.4206 19 14 10.8715 9.2693 3.9070 20 1 10.6807 9.4324 5.3707 21 1 9.9732 10.2047 3.1835 22 1 12.2831 9.5675 3.5556 23 6 3.4939 1.4283 -0.1755 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6930 1.2957 2.0878 30 1 0.8130 2.5999 1.2416 31 1 3.4226 2.7395 2.4950 32 1 2.5577 4.0353 1.6145 33 1 5.9838 2.6139 -0.0147 34 1 5.4764 2.1199 1.6183 35 1 5.4773 4.8995 0.6378 36 1 7.7223 4.0238 0.9511 37 1 7.2156 3.5296 2.5843 38 1 5.4665 5.8661 3.3001 39 1 6.7646 5.2053 4.3230 40 1 6.7422 6.9396 3.9225 41 1 9.4509 5.4774 1.7945 42 1 9.0725 5.0920 3.4906 43 1 11.1968 5.6829 3.1670 44 1 3.7588 1.3376 -1.2290 45 1 3.9745 0.6459 0.4118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602522507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:34 Heat of formation + Delta-G solvation = -28.234156 kcal Electronic energy + Delta-G solvation = -18873.597527 eV Core-core repulsion = 16117.447420 eV Total energy + Delta-G solvation = -2756.150107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43809 -36.98089 -34.83957 -33.18640 -31.78906 -29.39185 -29.25184 -26.44796 -25.60165 -23.63981 -23.13383 -22.17214 -21.02746 -20.15960 -19.13868 -16.68865 -16.50236 -15.99226 -15.23192 -14.79837 -14.52920 -14.15526 -13.96346 -13.68043 -13.47727 -13.26918 -12.93001 -12.78859 -11.99122 -11.94635 -11.81404 -11.66979 -11.52442 -11.45789 -11.22753 -11.08222 -10.94110 -10.85600 -10.64561 -10.61064 -10.16821 -10.07402 -9.79678 -9.42436 -8.69217 -8.44894 -8.27824 -8.16177 -6.30903 -3.98734 3.45960 3.49562 3.65136 3.70149 4.20071 4.52338 4.58044 4.71812 4.72606 4.92421 4.96391 5.07412 5.18581 5.28795 5.38130 5.43088 5.45863 5.49003 5.52523 5.62382 5.66076 5.67427 5.77707 5.84640 5.89365 5.91612 6.06574 6.10981 6.21296 6.33410 6.45994 6.60748 6.65408 6.79808 6.90787 7.08096 7.13560 7.29290 7.43448 7.57554 7.64610 8.29098 8.52715 8.94547 9.72711 11.09574 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.066492 B = 0.002910 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.005135 B = 9621.056004 C = 9845.021312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.041 3.959 3 N -0.519 5.519 4 C 0.033 3.967 5 C -0.113 4.113 6 C -0.087 4.087 7 H 0.081 0.919 8 C 0.067 3.933 9 N -0.685 5.685 10 C 0.063 3.937 11 C -0.075 4.075 12 H 0.054 0.946 13 C -0.121 4.121 14 C 0.013 3.987 15 C -0.593 4.593 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.917 5.917 19 Si 1.070 2.930 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.040 3.960 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.337 0.663 36 H 0.022 0.978 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.003 0.997 42 H 0.006 0.994 43 H 0.268 0.732 44 H 0.080 0.920 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.473 -12.020 -6.590 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 N -0.244 5.244 4 C -0.094 4.094 5 C -0.152 4.152 6 C -0.106 4.106 7 H 0.099 0.901 8 C -0.063 4.063 9 N -0.315 5.315 10 C -0.065 4.065 11 C -0.094 4.094 12 H 0.073 0.927 13 C -0.179 4.179 14 C -0.024 4.024 15 C -0.631 4.631 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.554 5.554 19 Si 0.899 3.101 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.088 4.088 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.021 0.979 42 H 0.025 0.975 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.772 -10.908 -5.881 22.494 hybrid contribution -0.328 -1.567 -0.691 1.744 sum -19.100 -12.475 -6.572 23.741 Atomic orbital electron populations 1.21745 0.94776 1.01391 1.02517 1.22242 0.96367 0.89408 1.00717 1.64764 1.12392 1.15661 1.31543 1.22946 0.99632 0.97077 0.89792 1.22320 0.94701 0.99778 0.98352 1.22052 0.94412 0.96567 0.97575 0.90069 1.21933 0.94104 0.92394 0.97898 1.60507 1.23755 1.04177 1.43057 1.22152 0.86363 0.99625 0.98386 1.21051 0.98139 0.92961 0.97243 0.92706 1.21568 0.97959 1.01272 0.97059 1.19256 0.90013 0.97675 0.95466 1.22059 0.97061 0.94796 1.49175 0.93164 1.25837 0.92861 1.05653 0.94834 1.70753 1.35211 1.03718 1.45685 0.83529 0.75787 0.74384 0.76418 1.21514 1.21523 1.21104 1.23221 0.87789 0.96751 1.01088 0.92757 0.91875 0.92447 0.90933 0.94798 0.94014 0.90611 0.90962 0.90818 0.95521 0.91369 0.84518 0.95960 0.91745 0.93758 0.94347 0.92690 0.97908 0.97535 0.92185 0.90170 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.97 37.16 0.37 -0.68 16 2 C 0.04 0.34 5.48 -3.82 -0.02 0.32 16 3 N -0.52 -5.07 5.26 -230.46 -1.21 -6.29 16 4 C 0.03 0.32 5.79 -2.76 -0.02 0.30 16 5 C -0.11 -1.18 6.33 -25.37 -0.16 -1.34 16 6 C -0.09 -0.90 3.25 -88.75 -0.29 -1.19 16 7 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 8 C 0.07 0.79 5.01 -3.82 -0.02 0.78 16 9 N -0.68 -9.70 5.77 -113.78 -0.66 -10.36 16 10 C 0.06 1.10 5.07 -3.82 -0.02 1.08 16 11 C -0.07 -1.55 2.48 -90.62 -0.22 -1.78 16 12 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 13 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 14 C 0.01 0.34 3.76 -27.89 -0.10 0.24 16 15 C -0.59 -16.95 8.41 -34.44 -0.29 -17.24 16 16 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 17 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 18 N -0.92 -28.53 13.65 55.43 0.76 -27.78 16 19 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 C 0.04 0.38 5.98 -1.90 -0.01 0.37 16 24 H 0.05 0.40 7.52 -51.93 -0.39 0.01 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.56 8.11 -51.93 -0.42 0.13 16 28 H 0.03 0.28 7.82 -51.93 -0.41 -0.13 16 29 H 0.04 0.39 7.57 -51.93 -0.39 -0.01 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.82 7.80 -51.93 -0.41 0.41 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.34 4.61 8.73 -39.29 -0.34 4.26 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 41 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 42 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 43 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.43 7.93 -51.93 -0.41 0.02 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -30.21 349.89 -10.37 -40.58 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.90 Total: -1.11 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.55 Total: -20.98 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.11 Total: -44.42 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.21 -10.37 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602522507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.350 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds