Wall clock time and date at job start Sun Mar 29 2020 23:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46945 * 2 1 4 4 C 1.46900 * 110.99878 * 163.42809 * 3 2 1 5 5 C 1.53000 * 109.47030 * 190.00128 * 4 3 2 6 6 N 1.46901 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.46894 * 111.00110 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47349 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46694 * 304.99808 * 8 7 6 10 10 C 1.52998 * 109.47147 * 65.00092 * 8 7 6 11 11 C 1.52998 * 109.47087 * 185.00136 * 8 7 6 12 12 C 1.50696 * 109.47121 * 174.99948 * 11 8 7 13 13 H 1.08005 * 120.00316 * 0.02562 * 12 11 8 14 14 C 1.37878 * 120.00399 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00408 * 179.72618 * 14 12 11 16 16 Si 1.86802 * 119.99731 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47390 * 269.72740 * 16 14 12 18 18 H 1.48501 * 109.47033 * 29.72765 * 16 14 12 19 19 H 1.48502 * 109.47241 * 149.72295 * 16 14 12 20 20 C 1.46900 * 111.00333 * 287.38227 * 3 2 1 21 21 C 1.52995 * 117.49986 * 138.31044 * 20 3 2 22 22 C 1.52998 * 117.49752 * 69.64835 * 20 3 2 23 23 H 1.09003 * 109.46536 * 313.64169 * 1 2 3 24 24 H 1.09000 * 109.47214 * 73.64333 * 1 2 3 25 25 H 1.08999 * 109.46801 * 193.64620 * 1 2 3 26 26 H 1.09002 * 109.47015 * 240.00894 * 2 1 3 27 27 H 1.09001 * 109.47481 * 120.00055 * 2 1 3 28 28 H 1.09003 * 109.47052 * 69.99895 * 4 3 2 29 29 H 1.09002 * 109.47262 * 310.00356 * 4 3 2 30 30 H 1.08997 * 109.47212 * 60.00345 * 5 4 3 31 31 H 1.08997 * 109.47069 * 299.99781 * 5 4 3 32 32 H 1.00905 * 110.99693 * 56.05102 * 6 5 4 33 33 H 1.08998 * 109.47507 * 60.00259 * 7 6 5 34 34 H 1.09006 * 109.47142 * 300.00380 * 7 6 5 35 35 H 1.08998 * 109.46919 * 180.02562 * 10 8 7 36 36 H 1.09006 * 109.47001 * 299.99944 * 10 8 7 37 37 H 1.09000 * 109.47570 * 59.99687 * 10 8 7 38 38 H 1.08992 * 109.47297 * 54.99597 * 11 8 7 39 39 H 1.09008 * 109.46976 * 294.99758 * 11 8 7 40 40 H 0.97000 * 120.00237 * 180.27421 * 15 14 12 41 41 H 1.09006 * 115.54682 * 283.98514 * 20 3 2 42 42 H 1.09002 * 117.49799 * 0.02562 * 21 20 3 43 43 H 1.09006 * 117.49582 * 145.01859 * 21 20 3 44 44 H 1.08999 * 117.50062 * 214.97363 * 22 20 3 45 45 H 1.08999 * 117.49889 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4345 1.4432 0.3912 5 6 3.8403 2.9003 0.6219 6 7 5.2549 2.9584 1.0136 7 6 5.6806 4.3452 1.2447 8 6 7.1560 4.3651 1.6492 9 1 7.3051 3.7154 2.5116 10 6 8.0116 3.8682 0.4822 11 6 7.5665 5.7941 2.0104 12 6 8.9827 5.7949 2.5256 13 1 9.5349 4.8689 2.5888 14 6 9.5739 6.9779 2.9155 15 7 10.8079 6.9779 3.3702 16 14 8.6196 8.5799 2.8042 17 1 8.8465 9.2000 1.4742 18 1 7.1709 8.3065 2.9822 19 1 9.0826 9.5068 3.8680 20 6 1.8089 2.0180 -1.3088 21 6 1.3131 3.4653 -1.3219 22 6 0.3682 2.3285 -1.7194 23 1 -0.3632 0.7093 0.7437 24 1 -0.3633 0.2894 -0.9861 25 1 -0.3633 -0.9987 0.2425 26 1 1.8934 -0.5137 -0.8901 27 1 1.8935 -0.5138 0.8900 28 1 4.0485 1.0162 -0.4018 29 1 3.5811 0.8753 1.3099 30 1 3.2263 3.3273 1.4148 31 1 3.6937 3.4681 -0.2969 32 1 5.8397 2.5104 0.3241 33 1 5.0791 4.7820 2.0418 34 1 5.5471 4.9234 0.3303 35 1 9.0627 3.8820 0.7706 36 1 7.7191 2.8501 0.2250 37 1 7.8625 4.5179 -0.3802 38 1 6.8993 6.1801 2.7809 39 1 7.5020 6.4256 1.1242 40 1 11.2224 7.8096 3.6482 41 1 2.5022 1.7163 -2.0940 42 1 1.1436 3.9480 -0.3594 43 1 1.6799 4.1158 -2.1160 44 1 0.1137 2.2317 -2.7749 45 1 -0.4233 2.0628 -1.0187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602525740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:12 Heat of formation + Delta-G solvation = 15.327416 kcal Electronic energy + Delta-G solvation = -18925.469099 eV Core-core repulsion = 16171.207963 eV Total energy + Delta-G solvation = -2754.261136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.15503 -37.03348 -34.90557 -33.92244 -32.17726 -30.94844 -27.94846 -26.92004 -24.81299 -23.13177 -22.65157 -22.15135 -21.47412 -20.48162 -18.94749 -16.84255 -16.30513 -16.07157 -15.59324 -15.35848 -14.38681 -14.18572 -13.91511 -13.79522 -13.58626 -13.23421 -12.88491 -12.46371 -12.44440 -12.02147 -11.93234 -11.71878 -11.65384 -11.44869 -11.30753 -11.06907 -10.98871 -10.68996 -10.41356 -10.36534 -10.28874 -9.77460 -9.70060 -9.40764 -9.02807 -8.62042 -8.49091 -8.15378 -5.99404 -3.96158 3.33443 3.40981 3.43116 3.45236 3.55124 4.44759 4.49464 4.69492 4.73052 4.79769 4.88017 4.97417 5.14431 5.19661 5.30459 5.34287 5.38292 5.41189 5.52531 5.58169 5.68542 5.69158 5.71342 5.78804 5.91714 5.94593 5.96402 5.99135 6.05847 6.19107 6.40705 6.49199 6.78118 6.83330 6.90419 6.99987 7.08728 7.28879 7.36057 7.52039 7.64465 7.85788 8.60321 9.06403 9.63657 11.14071 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.003311 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.988232 B = 8455.583876 C = 8829.899408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 N -0.512 5.512 4 C 0.062 3.938 5 C 0.064 3.936 6 N -0.691 5.691 7 C 0.065 3.935 8 C -0.076 4.076 9 H 0.072 0.928 10 C -0.135 4.135 11 C -0.008 4.008 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.878 3.122 17 H -0.279 1.279 18 H -0.266 1.266 19 H -0.289 1.289 20 C 0.004 3.996 21 C -0.163 4.163 22 C -0.176 4.176 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.336 0.664 33 H 0.067 0.933 34 H 0.022 0.978 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.015 0.985 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.933 -11.999 -10.323 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.072 4.072 3 N -0.237 5.237 4 C -0.066 4.066 5 C -0.066 4.066 6 N -0.323 5.323 7 C -0.064 4.064 8 C -0.095 4.095 9 H 0.090 0.910 10 C -0.193 4.193 11 C -0.046 4.046 12 C -0.550 4.550 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.706 3.294 17 H -0.205 1.205 18 H -0.190 1.190 19 H -0.215 1.215 20 C -0.105 4.105 21 C -0.201 4.201 22 C -0.213 4.213 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.155 0.845 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.033 0.967 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.195 -11.753 -9.235 25.935 hybrid contribution 0.218 0.852 -1.566 1.796 sum -20.977 -10.901 -10.801 25.991 Atomic orbital electron populations 1.22004 0.95027 1.01569 1.02456 1.22017 0.96172 0.88328 1.00710 1.61769 1.18717 1.17234 1.26003 1.22061 0.86458 0.97752 1.00306 1.21869 0.90074 0.95221 0.99423 1.60472 1.02502 1.18505 1.50798 1.22130 0.97872 0.87169 0.99201 1.21036 0.90754 0.99584 0.98104 0.91005 1.21748 1.01802 0.97974 0.97745 1.19601 0.97403 0.91779 0.95852 1.21142 0.96557 0.95418 1.41910 0.90825 1.25031 0.94727 0.99017 0.94848 1.69913 1.13101 1.27228 1.44279 0.86803 0.81048 0.83819 0.77753 1.20466 1.19028 1.21481 1.22366 0.97606 0.98903 0.91592 1.23058 1.03016 0.90800 1.03198 1.23242 0.93185 1.03318 1.01594 0.91728 0.92113 0.92627 0.94834 0.90794 0.95109 0.89777 0.90635 0.95295 0.84518 0.91487 0.95953 0.91345 0.94761 0.94142 0.96654 0.97289 0.92850 0.89953 0.88087 0.88960 0.89028 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.63 37.16 0.32 -0.78 16 2 C 0.06 0.47 5.70 -3.82 -0.02 0.45 16 3 N -0.51 -5.09 4.60 -226.64 -1.04 -6.13 16 4 C 0.06 0.67 5.21 -3.82 -0.02 0.65 16 5 C 0.06 0.80 5.50 -3.82 -0.02 0.78 16 6 N -0.69 -10.01 6.50 -113.78 -0.74 -10.75 16 7 C 0.07 1.10 5.14 -3.83 -0.02 1.08 16 8 C -0.08 -1.52 2.55 -90.62 -0.23 -1.75 16 9 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 10 C -0.14 -2.51 8.77 37.16 0.33 -2.18 16 11 C -0.01 -0.20 3.51 -27.89 -0.10 -0.30 16 12 C -0.51 -14.61 8.96 -34.44 -0.31 -14.92 16 13 H 0.07 2.25 7.30 -52.48 -0.38 1.87 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 16 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 C 0.00 0.04 4.21 -67.72 -0.29 -0.25 16 21 C -0.16 -1.46 9.28 -26.69 -0.25 -1.71 16 22 C -0.18 -1.38 8.66 -26.69 -0.23 -1.61 16 23 H 0.06 0.51 8.05 -51.93 -0.42 0.10 16 24 H 0.06 0.42 5.72 -51.93 -0.30 0.12 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.03 0.28 8.04 -51.93 -0.42 -0.14 16 27 H 0.07 0.61 7.80 -51.93 -0.40 0.20 16 28 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.36 6.59 -51.93 -0.34 0.02 16 32 H 0.34 4.62 6.98 -39.29 -0.27 4.35 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 1.43 6.95 -51.93 -0.36 1.06 16 36 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.21 7.57 -51.92 -0.39 -0.18 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.11 0.82 5.93 -51.93 -0.31 0.51 16 LS Contribution 345.39 15.07 5.20 5.20 Total: -1.00 -29.96 345.39 -9.95 -39.91 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.54 Total: 0.59 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -0.93 Total: -18.76 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.01 Total: -44.32 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.96 -9.95 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602525740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.241 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds