Wall clock time and date at job start Sun Mar 29 2020 23:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46945 * 2 1 4 4 C 1.46900 * 110.99878 * 163.42809 * 3 2 1 5 5 C 1.53000 * 109.47030 * 190.00128 * 4 3 2 6 6 N 1.46901 * 109.46990 * 179.97438 * 5 4 3 7 7 C 1.46894 * 111.00110 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47349 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46694 * 304.99808 * 8 7 6 10 10 C 1.52998 * 109.47147 * 65.00092 * 8 7 6 11 11 C 1.52998 * 109.47087 * 185.00136 * 8 7 6 12 12 C 1.50696 * 109.47121 * 174.99948 * 11 8 7 13 13 H 1.08005 * 120.00316 * 0.02562 * 12 11 8 14 14 C 1.37878 * 120.00399 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00408 * 179.72618 * 14 12 11 16 16 Si 1.86802 * 119.99731 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47390 * 269.72740 * 16 14 12 18 18 H 1.48501 * 109.47033 * 29.72765 * 16 14 12 19 19 H 1.48502 * 109.47241 * 149.72295 * 16 14 12 20 20 C 1.46900 * 111.00333 * 287.38227 * 3 2 1 21 21 C 1.52995 * 117.49986 * 138.31044 * 20 3 2 22 22 C 1.52998 * 117.49752 * 69.64835 * 20 3 2 23 23 H 1.09003 * 109.46536 * 313.64169 * 1 2 3 24 24 H 1.09000 * 109.47214 * 73.64333 * 1 2 3 25 25 H 1.08999 * 109.46801 * 193.64620 * 1 2 3 26 26 H 1.09002 * 109.47015 * 240.00894 * 2 1 3 27 27 H 1.09001 * 109.47481 * 120.00055 * 2 1 3 28 28 H 1.09003 * 109.47052 * 69.99895 * 4 3 2 29 29 H 1.09002 * 109.47262 * 310.00356 * 4 3 2 30 30 H 1.08997 * 109.47212 * 60.00345 * 5 4 3 31 31 H 1.08997 * 109.47069 * 299.99781 * 5 4 3 32 32 H 1.00905 * 110.99693 * 56.05102 * 6 5 4 33 33 H 1.08998 * 109.47507 * 60.00259 * 7 6 5 34 34 H 1.09006 * 109.47142 * 300.00380 * 7 6 5 35 35 H 1.08998 * 109.46919 * 180.02562 * 10 8 7 36 36 H 1.09006 * 109.47001 * 299.99944 * 10 8 7 37 37 H 1.09000 * 109.47570 * 59.99687 * 10 8 7 38 38 H 1.08992 * 109.47297 * 54.99597 * 11 8 7 39 39 H 1.09008 * 109.46976 * 294.99758 * 11 8 7 40 40 H 0.97000 * 120.00237 * 180.27421 * 15 14 12 41 41 H 1.09006 * 115.54682 * 283.98514 * 20 3 2 42 42 H 1.09002 * 117.49799 * 0.02562 * 21 20 3 43 43 H 1.09006 * 117.49582 * 145.01859 * 21 20 3 44 44 H 1.08999 * 117.50062 * 214.97363 * 22 20 3 45 45 H 1.08999 * 117.49889 * 359.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4345 1.4432 0.3912 5 6 3.8403 2.9003 0.6219 6 7 5.2549 2.9584 1.0136 7 6 5.6806 4.3452 1.2447 8 6 7.1560 4.3651 1.6492 9 1 7.3051 3.7154 2.5116 10 6 8.0116 3.8682 0.4822 11 6 7.5665 5.7941 2.0104 12 6 8.9827 5.7949 2.5256 13 1 9.5349 4.8689 2.5888 14 6 9.5739 6.9779 2.9155 15 7 10.8079 6.9779 3.3702 16 14 8.6196 8.5799 2.8042 17 1 8.8465 9.2000 1.4742 18 1 7.1709 8.3065 2.9822 19 1 9.0826 9.5068 3.8680 20 6 1.8089 2.0180 -1.3088 21 6 1.3131 3.4653 -1.3219 22 6 0.3682 2.3285 -1.7194 23 1 -0.3632 0.7093 0.7437 24 1 -0.3633 0.2894 -0.9861 25 1 -0.3633 -0.9987 0.2425 26 1 1.8934 -0.5137 -0.8901 27 1 1.8935 -0.5138 0.8900 28 1 4.0485 1.0162 -0.4018 29 1 3.5811 0.8753 1.3099 30 1 3.2263 3.3273 1.4148 31 1 3.6937 3.4681 -0.2969 32 1 5.8397 2.5104 0.3241 33 1 5.0791 4.7820 2.0418 34 1 5.5471 4.9234 0.3303 35 1 9.0627 3.8820 0.7706 36 1 7.7191 2.8501 0.2250 37 1 7.8625 4.5179 -0.3802 38 1 6.8993 6.1801 2.7809 39 1 7.5020 6.4256 1.1242 40 1 11.2224 7.8096 3.6482 41 1 2.5022 1.7163 -2.0940 42 1 1.1436 3.9480 -0.3594 43 1 1.6799 4.1158 -2.1160 44 1 0.1137 2.2317 -2.7749 45 1 -0.4233 2.0628 -1.0187 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602525740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:11 Heat of formation + Delta-G solvation = -4.093868 kcal Electronic energy + Delta-G solvation = -18926.311269 eV Core-core repulsion = 16171.207963 eV Total energy + Delta-G solvation = -2755.103306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90391 -38.40506 -36.01176 -35.10879 -34.04463 -31.93009 -29.60327 -28.19582 -26.26358 -23.91304 -23.70506 -23.31833 -22.51940 -21.24056 -20.58597 -18.94537 -17.26823 -16.87186 -16.56984 -16.44766 -16.07558 -15.49625 -15.19207 -14.97461 -14.60731 -14.31094 -14.10860 -13.95825 -13.66617 -13.43087 -13.14916 -12.81070 -12.75365 -12.53204 -12.43172 -12.25045 -12.10073 -12.08765 -11.83904 -11.69770 -11.45920 -11.19358 -11.07059 -11.02685 -10.92767 -10.73399 -9.40697 -9.27057 -8.25740 -6.28047 1.35818 1.38126 1.50003 2.38171 2.65423 2.88821 3.09452 3.41956 4.00212 4.02481 4.07264 4.10585 4.19002 4.21950 4.26233 4.34167 4.42136 4.52969 4.61672 4.65930 4.72801 4.75100 4.80183 4.82928 4.95538 4.99463 5.01953 5.03406 5.07925 5.11303 5.17570 5.29294 5.30988 5.37938 5.40706 5.54800 5.69724 5.73389 6.05371 6.10971 6.21461 6.35217 6.51024 6.79534 7.35497 8.91058 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.003311 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.988232 B = 8455.583876 C = 8829.899408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 N -0.520 5.520 4 C 0.069 3.931 5 C 0.072 3.928 6 N -0.694 5.694 7 C 0.078 3.922 8 C -0.072 4.072 9 H 0.053 0.947 10 C -0.129 4.129 11 C -0.006 4.006 12 C -0.519 4.519 13 H 0.035 0.965 14 C 0.001 3.999 15 N -0.954 5.954 16 Si 0.948 3.052 17 H -0.267 1.267 18 H -0.248 1.248 19 H -0.286 1.286 20 C -0.006 4.006 21 C -0.170 4.170 22 C -0.161 4.161 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.343 0.657 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.015 0.985 39 H 0.017 0.983 40 H 0.264 0.736 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.418 -11.937 -11.714 28.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 N -0.245 5.245 4 C -0.059 4.059 5 C -0.057 4.057 6 N -0.327 5.327 7 C -0.051 4.051 8 C -0.091 4.091 9 H 0.071 0.929 10 C -0.186 4.186 11 C -0.044 4.044 12 C -0.557 4.557 13 H 0.053 0.947 14 C -0.195 4.195 15 N -0.596 5.596 16 Si 0.772 3.228 17 H -0.192 1.192 18 H -0.171 1.171 19 H -0.212 1.212 20 C -0.115 4.115 21 C -0.207 4.207 22 C -0.198 4.198 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.162 0.838 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.702 -11.715 -10.637 28.498 hybrid contribution 1.027 0.730 -1.123 1.688 sum -22.675 -10.985 -11.760 27.805 Atomic orbital electron populations 1.21960 0.94022 1.02097 1.02456 1.22088 0.96976 0.87531 1.00842 1.61768 1.17912 1.18220 1.26597 1.21923 0.87320 0.96387 1.00269 1.21799 0.88478 0.96417 0.99053 1.60389 1.03739 1.17011 1.51516 1.21850 0.95158 0.88702 0.99386 1.20899 0.93428 0.96689 0.98061 0.92881 1.21659 0.99484 1.00120 0.97338 1.19555 0.94443 0.94640 0.95765 1.21458 0.98586 0.94045 1.41585 0.94682 1.26005 0.95712 1.03272 0.94553 1.70070 1.15143 1.28446 1.45896 0.85688 0.80255 0.78674 0.78207 1.19241 1.17117 1.21167 1.22410 0.98723 0.99056 0.91286 1.23056 1.03875 0.90887 1.02926 1.23293 0.92351 1.01722 1.02483 0.92597 0.91640 0.91409 0.94575 0.90784 0.94771 0.90242 0.91631 0.94945 0.83824 0.91837 0.95091 0.94606 0.91636 0.93248 0.96632 0.96510 0.92674 0.90051 0.89228 0.88398 0.87521 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.63 71.98 0.62 -1.22 16 2 C 0.05 0.80 5.70 86.30 0.49 1.29 16 3 N -0.52 -9.47 4.60 -870.96 -4.01 -13.48 16 4 C 0.07 1.38 5.21 86.30 0.45 1.83 16 5 C 0.07 1.67 5.50 86.30 0.47 2.14 16 6 N -0.69 -18.81 6.50 -513.89 -3.34 -22.15 16 7 C 0.08 2.49 5.14 86.31 0.44 2.93 16 8 C -0.07 -2.82 2.55 -10.79 -0.03 -2.85 16 9 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 10 C -0.13 -4.67 8.77 71.98 0.63 -4.04 16 11 C -0.01 -0.29 3.51 29.85 0.10 -0.19 16 12 C -0.52 -30.23 8.96 25.60 0.23 -30.00 16 13 H 0.03 2.25 7.30 -2.91 -0.02 2.22 16 14 C 0.00 0.04 5.47 84.66 0.46 0.50 16 15 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 16 Si 0.95 45.09 27.47 68.60 1.88 46.98 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 C -0.01 -0.10 4.21 44.91 0.19 0.09 16 21 C -0.17 -2.75 9.28 30.62 0.28 -2.46 16 22 C -0.16 -2.16 8.66 30.62 0.27 -1.90 16 23 H 0.05 0.80 8.05 -2.39 -0.02 0.78 16 24 H 0.06 0.75 5.72 -2.39 -0.01 0.73 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.04 0.53 8.04 -2.39 -0.02 0.51 16 27 H 0.07 1.10 7.80 -2.39 -0.02 1.09 16 28 H 0.03 0.66 8.12 -2.39 -0.02 0.64 16 29 H 0.08 1.67 7.86 -2.39 -0.02 1.65 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 0.74 6.59 -2.39 -0.02 0.73 16 32 H 0.34 8.60 6.98 -89.69 -0.63 7.98 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.03 1.51 6.95 -2.39 -0.02 1.49 16 36 H 0.06 1.94 6.68 -2.38 -0.02 1.92 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 39 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 40 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 41 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.11 1.42 5.93 -2.39 -0.01 1.41 16 Total: -1.00 -64.94 345.39 -0.30 -65.23 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.25 Total: 17.89 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 4.62 Total: -33.86 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -7.05 Total: -96.24 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.98 kcal Total: -64.94 -0.30 -65.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602525740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.141 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds