Wall clock time and date at job start Sun Mar 29 2020 23:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47465 * 2 1 4 4 C 1.53002 * 109.47162 * 240.00502 * 2 1 3 5 5 C 1.50692 * 109.47333 * 64.99516 * 4 2 1 6 6 H 1.08004 * 120.00215 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00256 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99888 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00406 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46849 * 90.00200 * 9 7 5 11 11 H 1.48492 * 109.47597 * 210.00356 * 9 7 5 12 12 H 1.48501 * 109.47168 * 330.00559 * 9 7 5 13 13 C 1.53000 * 109.47683 * 120.00303 * 2 1 3 14 14 N 1.46900 * 109.46981 * 294.00959 * 13 2 1 15 15 C 1.46959 * 111.00202 * 86.82880 * 14 13 2 16 16 C 1.53046 * 109.36616 * 183.19059 * 15 14 13 17 17 N 1.46953 * 109.36602 * 301.59926 * 16 15 14 18 18 C 1.46900 * 111.00301 * 183.18994 * 17 16 15 19 19 C 1.46959 * 110.87914 * 59.31827 * 17 16 15 20 20 H 1.08995 * 109.48650 * 60.65079 * 19 17 16 21 21 C 1.53001 * 109.48530 * 180.69272 * 19 17 16 22 22 C 1.46953 * 111.00301 * 210.63033 * 14 13 2 23 23 H 1.09004 * 109.48569 * 296.78111 * 22 14 13 24 24 C 1.53001 * 109.48910 * 56.84373 * 22 14 13 25 25 H 1.09002 * 109.47957 * 73.47274 * 1 2 3 26 26 H 1.09009 * 109.46835 * 193.47216 * 1 2 3 27 27 H 1.09003 * 109.47177 * 313.46951 * 1 2 3 28 28 H 1.09001 * 109.47056 * 185.00135 * 4 2 1 29 29 H 1.08999 * 109.46802 * 304.99528 * 4 2 1 30 30 H 0.97004 * 119.99813 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.47019 * 54.00383 * 13 2 1 32 32 H 1.08996 * 109.47494 * 174.00888 * 13 2 1 33 33 H 1.09006 * 109.48933 * 303.15814 * 15 14 13 34 34 H 1.08995 * 109.49031 * 63.21763 * 15 14 13 35 35 H 1.09004 * 109.49292 * 61.56587 * 16 15 14 36 36 H 1.08996 * 109.48973 * 181.62906 * 16 15 14 37 37 H 1.08994 * 109.47363 * 63.95222 * 18 17 16 38 38 H 1.08997 * 109.47241 * 183.95365 * 18 17 16 39 39 H 1.09000 * 109.46695 * 303.95272 * 18 17 16 40 40 H 1.08993 * 109.47228 * 60.00718 * 21 19 17 41 41 H 1.09011 * 109.46756 * 180.02562 * 21 19 17 42 42 H 1.09000 * 109.47401 * 299.99587 * 21 19 17 43 43 H 1.08996 * 109.47141 * 52.60028 * 24 22 14 44 44 H 1.08995 * 109.46958 * 172.60566 * 24 22 14 45 45 H 1.09008 * 109.46849 * 292.60212 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0804 0.9746 -2.3756 7 6 1.9931 -0.4015 -3.7283 8 7 2.6764 -1.5185 -3.8512 9 14 1.4982 0.5628 -5.2497 10 1 2.5629 1.5433 -5.5823 11 1 1.3120 -0.3711 -6.3890 12 1 0.2265 1.2832 -4.9872 13 6 2.0400 -0.7213 1.2492 14 7 1.6720 0.0496 2.4443 15 6 0.3268 -0.3134 2.9115 16 6 -0.0497 0.5655 4.1065 17 7 0.9423 0.3854 5.1756 18 6 0.5743 1.1563 6.3707 19 6 2.2876 0.7483 4.7084 20 1 2.2975 1.7957 4.4069 21 6 3.2958 0.5329 5.8388 22 6 2.6640 -0.1306 3.5134 23 1 2.6806 -1.1760 3.8216 24 6 4.0475 0.2725 2.9991 25 1 -0.3635 0.2923 -0.9852 26 1 -0.3633 -0.9995 0.2394 27 1 -0.3634 0.7070 0.7458 28 1 3.1262 -0.7994 -1.2056 29 1 1.6053 -1.7197 -1.2952 30 1 2.9236 -1.8414 -4.7319 31 1 1.5918 -1.7133 1.3044 32 1 3.1247 -0.8151 1.1971 33 1 -0.3917 -0.1595 2.1063 34 1 0.3167 -1.3608 3.2129 35 1 -0.0663 1.6110 3.7983 36 1 -1.0353 0.2785 4.4729 37 1 -0.3626 0.7737 6.7756 38 1 1.3597 1.0613 7.1205 39 1 0.4526 2.2058 6.1028 40 1 3.2862 -0.5147 6.1395 41 1 4.2935 0.8026 5.4921 42 1 3.0262 1.1578 6.6902 43 1 3.9986 1.2736 2.5711 44 1 4.7586 0.2648 3.8252 45 1 4.3710 -0.4341 2.2347 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602617543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:02 Heat of formation + Delta-G solvation = 3.095474 kcal Electronic energy + Delta-G solvation = -20148.487607 eV Core-core repulsion = 17393.696054 eV Total energy + Delta-G solvation = -2754.791553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80139 -36.60741 -34.27652 -33.32962 -31.88023 -28.99613 -28.43046 -26.84801 -25.82579 -25.42886 -22.94410 -21.72548 -21.18377 -19.51531 -18.82293 -16.32201 -16.13342 -15.62552 -15.33312 -14.66296 -14.47833 -14.25045 -14.06353 -13.52029 -13.13727 -12.73396 -12.56739 -12.43881 -12.23937 -12.06108 -11.67400 -11.58927 -11.56104 -11.37642 -11.24022 -10.92661 -10.85651 -10.75589 -10.59232 -10.28338 -10.11491 -9.94697 -9.57713 -9.02051 -8.94028 -8.39204 -8.29352 -7.91864 -5.94353 -3.95048 3.35136 3.41381 3.44706 3.83266 4.13298 4.51366 4.73717 4.95593 5.01184 5.24123 5.29646 5.37661 5.41392 5.43817 5.46938 5.47743 5.55295 5.65699 5.69086 5.76407 5.85869 5.89743 5.92780 6.00719 6.08184 6.13859 6.19473 6.23279 6.39772 6.41010 6.58301 6.66553 6.94276 7.00659 7.07831 7.22570 7.25538 7.46893 7.54285 7.74998 7.92057 8.06772 8.51176 9.11508 9.68063 11.17194 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.004413 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.085938 B = 6343.970938 C = 6729.397355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.062 0.938 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.054 3.946 14 N -0.533 5.533 15 C 0.042 3.958 16 C 0.058 3.942 17 N -0.542 5.542 18 C 0.021 3.979 19 C 0.088 3.912 20 H 0.048 0.952 21 C -0.149 4.149 22 C 0.088 3.912 23 H 0.043 0.957 24 C -0.151 4.151 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.013 0.987 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.023 0.977 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 3.765 19.318 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.072 4.072 14 N -0.257 5.257 15 C -0.085 4.085 16 C -0.070 4.070 17 N -0.267 5.267 18 C -0.127 4.127 19 C -0.020 4.020 20 H 0.066 0.934 21 C -0.207 4.207 22 C -0.021 4.021 23 H 0.061 0.939 24 C -0.208 4.208 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.653 3.642 19.189 19.601 hybrid contribution -0.281 0.416 -0.909 1.038 sum -1.934 4.059 18.280 18.825 Atomic orbital electron populations 1.21924 0.96931 0.99210 1.01255 1.21146 0.94894 0.99776 0.93619 0.91951 1.19117 0.95982 0.95425 0.90502 1.21242 1.34475 1.08201 0.90989 0.92580 1.25016 0.95395 0.95073 0.99048 1.69970 1.39219 1.21238 1.23306 0.86646 0.78926 0.79817 0.82918 1.20763 1.21354 1.19922 1.22473 1.00625 0.94490 0.89655 1.62221 1.01229 1.57233 1.05045 1.22573 0.92253 0.96959 0.96763 1.22182 0.94866 0.98949 0.91013 1.62180 1.02336 1.56235 1.05979 1.22425 1.01570 0.95406 0.93343 1.21666 0.88390 0.97872 0.94119 0.93407 1.21987 0.98544 1.02414 0.97719 1.21618 0.92464 0.97465 0.90510 0.93928 1.22009 0.94933 1.02857 1.01051 0.91809 0.94489 0.94124 0.96850 0.96835 0.93151 0.94951 0.90978 0.88296 0.94708 0.94101 0.90728 0.91652 0.91072 0.95820 0.91940 0.91641 0.92520 0.91600 0.92167 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.60 37.15 0.28 -2.33 16 2 C -0.08 -1.57 2.54 -90.62 -0.23 -1.80 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.39 8.21 -34.44 -0.28 -14.67 16 6 H 0.06 1.55 7.16 -52.48 -0.38 1.17 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.05 0.97 4.51 -3.82 -0.02 0.96 16 14 N -0.53 -8.32 4.37 -226.50 -0.99 -9.31 16 15 C 0.04 0.61 5.11 -3.77 -0.02 0.59 16 16 C 0.06 0.72 5.62 -3.77 -0.02 0.70 16 17 N -0.54 -6.53 4.78 -234.74 -1.12 -7.65 16 18 C 0.02 0.20 9.36 60.06 0.56 0.76 16 19 C 0.09 1.07 2.07 -67.66 -0.14 0.93 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 21 C -0.15 -1.44 8.58 37.16 0.32 -1.12 16 22 C 0.09 1.21 2.07 -67.66 -0.14 1.07 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 C -0.15 -1.93 8.65 37.16 0.32 -1.61 16 25 H 0.06 1.35 6.68 -51.93 -0.35 1.00 16 26 H 0.04 0.67 7.75 -51.92 -0.40 0.27 16 27 H 0.04 0.69 6.29 -51.93 -0.33 0.36 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.03 0.59 7.73 -51.93 -0.40 0.19 16 32 H 0.07 1.29 5.37 -51.93 -0.28 1.01 16 33 H 0.10 1.45 4.25 -51.93 -0.22 1.23 16 34 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.60 5.83 -51.93 -0.30 0.30 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.58 6.33 -51.92 -0.33 0.25 16 42 H 0.06 0.48 6.19 -51.93 -0.32 0.16 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.63 6.13 -51.93 -0.32 0.31 16 45 H 0.06 0.87 6.22 -51.92 -0.32 0.55 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -29.76 329.45 -9.17 -38.93 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.15 Total: -2.89 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 0.41 Total: -14.45 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -1.38 Total: -43.37 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.76 -9.17 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602617543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.024 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds