Wall clock time and date at job start Sun Mar 29 2020 23:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46978 * 2 1 4 4 C 1.52998 * 109.47268 * 240.00367 * 2 1 3 5 5 C 1.50698 * 109.47187 * 64.99693 * 4 2 1 6 6 H 1.07995 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99524 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99701 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00469 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46873 * 89.99715 * 9 7 5 11 11 H 1.48501 * 109.47444 * 210.00021 * 9 7 5 12 12 H 1.48503 * 109.47200 * 330.00071 * 9 7 5 13 13 C 1.53002 * 109.47113 * 119.99751 * 2 1 3 14 14 N 1.46896 * 109.47255 * 295.00628 * 13 2 1 15 15 C 1.46900 * 110.99908 * 180.59987 * 14 13 2 16 16 C 1.53001 * 112.84553 * 295.59822 * 15 14 13 17 17 N 1.46894 * 109.47780 * 292.59773 * 16 15 14 18 18 C 1.46900 * 111.00123 * 162.22256 * 17 16 15 19 19 C 1.46905 * 110.99596 * 286.17739 * 17 16 15 20 20 C 1.53776 * 113.69372 * 66.87412 * 15 14 13 21 21 C 1.53777 * 87.08456 * 89.12843 * 20 15 14 22 22 C 1.53783 * 87.08064 * 25.43146 * 21 20 15 23 23 H 1.09004 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47347 * 299.99963 * 1 2 3 25 25 H 1.09000 * 109.47074 * 60.00006 * 1 2 3 26 26 H 1.09001 * 109.47074 * 185.00086 * 4 2 1 27 27 H 1.09003 * 109.46599 * 304.99349 * 4 2 1 28 28 H 0.97005 * 120.00517 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47130 * 175.00325 * 13 2 1 30 30 H 1.08997 * 109.46590 * 55.00345 * 13 2 1 31 31 H 1.00900 * 111.00578 * 56.63698 * 14 13 2 32 32 H 1.09002 * 109.46739 * 172.59085 * 16 15 14 33 33 H 1.09001 * 109.46859 * 52.59979 * 16 15 14 34 34 H 1.09000 * 109.46722 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.47253 * 299.99714 * 18 17 16 36 36 H 1.09002 * 109.46890 * 60.00013 * 18 17 16 37 37 H 1.09002 * 109.47330 * 309.75746 * 19 17 16 38 38 H 1.08993 * 109.47338 * 69.76033 * 19 17 16 39 39 H 1.09004 * 109.46856 * 189.76076 * 19 17 16 40 40 H 1.09005 * 113.61511 * 203.68117 * 20 15 14 41 41 H 1.08999 * 113.61316 * 334.57373 * 20 15 14 42 42 H 1.09001 * 113.61206 * 270.88873 * 21 20 15 43 43 H 1.08999 * 113.69334 * 139.99405 * 21 20 15 44 44 H 1.09002 * 113.61680 * 220.01980 * 22 21 20 45 45 H 1.08997 * 113.61481 * 89.11998 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9933 -0.4016 -3.7282 8 7 1.6458 0.2778 -4.7993 9 14 2.9638 -1.9882 -3.9028 10 1 2.0246 -3.1325 -4.0201 11 1 3.8128 -1.9179 -5.1191 12 1 3.8254 -2.1755 -2.7079 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1374 -0.6194 3.6664 16 6 1.5036 -1.9931 3.8946 17 7 0.0740 -1.8299 4.1904 18 6 -0.6503 -3.0938 4.0014 19 6 -0.1261 -1.3063 5.5483 20 6 3.6693 -0.6176 3.8010 21 6 3.5259 0.7334 4.5213 22 6 2.1059 0.2874 4.9081 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.1264 -0.7994 -1.2056 27 1 1.6055 -1.7198 -1.2951 28 1 1.8931 -0.0450 -5.6799 29 1 3.1263 -0.7994 1.2057 30 1 1.6054 -1.7197 1.2951 31 1 0.6518 0.1709 2.4803 32 1 1.9946 -2.4848 4.7344 33 1 1.6219 -2.6013 2.9978 34 1 -1.7062 -2.9447 4.2275 35 1 -0.5427 -3.4233 2.9681 36 1 -0.2396 -3.8513 4.6690 37 1 0.4490 -1.9030 6.2563 38 1 0.2083 -0.2698 5.5910 39 1 -1.1842 -1.3575 5.8051 40 1 4.0525 -1.4141 4.4389 41 1 4.1913 -0.5503 2.8465 42 1 3.5462 1.5911 3.8489 43 1 4.1950 0.8483 5.3741 44 1 1.3658 1.0854 4.8474 45 1 2.0617 -0.2616 5.8487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602647106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:59 Heat of formation + Delta-G solvation = 17.701173 kcal Electronic energy + Delta-G solvation = -20035.575126 eV Core-core repulsion = 17281.416924 eV Total energy + Delta-G solvation = -2754.158202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04502 -36.59481 -35.99917 -32.85745 -31.37272 -28.37422 -28.04688 -27.21253 -25.87598 -24.91194 -23.57053 -22.05791 -21.03742 -18.94680 -18.58680 -16.77183 -16.11981 -15.76471 -15.39856 -15.01245 -14.66442 -14.26831 -13.92472 -13.58092 -13.17527 -12.87687 -12.54529 -12.44906 -12.36112 -12.24208 -12.13261 -11.82633 -11.66072 -11.51776 -11.18476 -10.96468 -10.73702 -10.67995 -10.34303 -10.25828 -9.98147 -9.71813 -9.66202 -9.32488 -8.98720 -8.56456 -8.46769 -7.95235 -5.97090 -3.93355 3.34426 3.41812 3.45894 3.76470 4.36649 4.51189 4.62416 4.77138 4.87106 4.93227 5.04337 5.18077 5.28790 5.30944 5.36764 5.48013 5.53825 5.58709 5.64838 5.70726 5.74652 5.78061 5.83855 5.88004 5.96043 6.05231 6.10714 6.30931 6.36670 6.41810 6.52827 6.60618 6.85936 6.87266 6.91648 7.07529 7.16670 7.38793 7.45989 7.59709 7.83474 7.88992 8.63452 9.09373 9.66211 11.16499 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.004962 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.031307 B = 5641.862301 C = 5980.016702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 H 0.069 0.931 4 C -0.008 4.008 5 C -0.510 4.510 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.064 3.936 14 N -0.656 5.656 15 C 0.099 3.901 16 C 0.032 3.968 17 N -0.540 5.540 18 C 0.025 3.975 19 C 0.013 3.987 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.127 4.127 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.064 0.936 26 H 0.013 0.987 27 H 0.008 0.992 28 H 0.261 0.739 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.350 0.650 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -4.545 22.167 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 H 0.088 0.912 4 C -0.046 4.046 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.065 4.065 14 N -0.288 5.288 15 C 0.007 3.993 16 C -0.098 4.098 17 N -0.263 5.263 18 C -0.124 4.124 19 C -0.135 4.135 20 C -0.171 4.171 21 C -0.166 4.166 22 C -0.165 4.165 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.032 0.968 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.171 0.829 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.125 -3.770 21.594 21.921 hybrid contribution 0.168 -2.412 0.323 2.439 sum 0.043 -6.182 21.917 22.773 Atomic orbital electron populations 1.21711 0.96161 1.00439 1.00671 1.21001 0.95260 1.00024 0.92959 0.91227 1.19595 0.95803 0.95640 0.93539 1.21152 1.35038 1.09533 0.89097 0.90819 1.25023 0.95699 0.96891 0.95978 1.69916 1.47375 1.39321 0.97968 0.86816 0.80665 0.84422 0.77580 1.20495 1.21527 1.19104 1.22105 0.99888 0.94739 0.89754 1.60573 1.20055 1.48418 0.99757 1.21970 0.94531 0.90959 0.91883 1.22822 0.87586 0.98874 1.00504 1.61847 1.10283 1.27927 1.26285 1.22406 0.98597 0.89909 1.01465 1.22763 1.01078 1.01476 0.88142 1.22999 0.95077 0.97810 1.01245 1.22691 0.96417 0.97794 0.99682 1.23068 0.97794 0.99232 0.96391 0.94213 0.94553 0.91657 0.96829 0.97388 0.92899 0.91825 0.95902 0.82904 0.94659 0.90676 0.91416 0.91305 0.96085 0.95974 0.89835 0.92003 0.90674 0.90683 0.89390 0.92442 0.90896 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.77 37.16 0.33 -2.20 16 2 C -0.07 -1.48 2.54 -90.62 -0.23 -1.71 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C -0.01 -0.19 3.52 -27.89 -0.10 -0.29 16 5 C -0.51 -14.60 8.96 -34.44 -0.31 -14.91 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 9 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 C 0.06 1.07 4.74 -3.82 -0.02 1.05 16 14 N -0.66 -9.49 6.24 -99.15 -0.62 -10.10 16 15 C 0.10 1.19 0.70 -130.79 -0.09 1.10 16 16 C 0.03 0.37 4.50 -3.83 -0.02 0.35 16 17 N -0.54 -6.00 4.79 -251.26 -1.20 -7.20 16 18 C 0.02 0.25 9.51 60.06 0.57 0.82 16 19 C 0.01 0.12 8.44 60.07 0.51 0.63 16 20 C -0.13 -1.53 7.17 -25.92 -0.19 -1.72 16 21 C -0.13 -1.38 8.00 -25.92 -0.21 -1.59 16 22 C -0.13 -1.31 5.04 -25.92 -0.13 -1.45 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.60 6.69 -51.93 -0.35 0.25 16 25 H 0.06 1.39 6.95 -51.93 -0.36 1.03 16 26 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 27 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.06 1.09 6.68 -51.93 -0.35 0.74 16 30 H 0.02 0.39 6.58 -51.93 -0.34 0.04 16 31 H 0.35 5.20 6.91 -39.29 -0.27 4.93 16 32 H 0.04 0.38 7.74 -51.93 -0.40 -0.02 16 33 H 0.07 0.97 6.32 -51.93 -0.33 0.65 16 34 H 0.07 0.61 8.02 -51.93 -0.42 0.20 16 35 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.02 0.19 7.89 -51.93 -0.41 -0.22 16 38 H 0.08 0.76 4.82 -51.93 -0.25 0.51 16 39 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16 40 H 0.07 0.76 8.02 -51.93 -0.42 0.35 16 41 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.79 7.65 -51.93 -0.40 0.39 16 45 H 0.08 0.70 6.85 -51.93 -0.36 0.34 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -29.87 335.55 -8.90 -38.77 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.26 Total: 1.66 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 0.02 Total: -18.09 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -1.05 Total: -44.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.87 -8.90 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602647106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.472 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds