Wall clock time and date at job start Sun Mar 29 2020 23:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46978 * 2 1 4 4 C 1.52998 * 109.47268 * 240.00367 * 2 1 3 5 5 C 1.50698 * 109.47187 * 64.99693 * 4 2 1 6 6 H 1.07995 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99524 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99701 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00469 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46873 * 89.99715 * 9 7 5 11 11 H 1.48501 * 109.47444 * 210.00021 * 9 7 5 12 12 H 1.48503 * 109.47200 * 330.00071 * 9 7 5 13 13 C 1.53002 * 109.47113 * 119.99751 * 2 1 3 14 14 N 1.46896 * 109.47255 * 295.00628 * 13 2 1 15 15 C 1.46900 * 110.99908 * 180.59987 * 14 13 2 16 16 C 1.53001 * 112.84553 * 295.59822 * 15 14 13 17 17 N 1.46894 * 109.47780 * 292.59773 * 16 15 14 18 18 C 1.46900 * 111.00123 * 162.22256 * 17 16 15 19 19 C 1.46905 * 110.99596 * 286.17739 * 17 16 15 20 20 C 1.53776 * 113.69372 * 66.87412 * 15 14 13 21 21 C 1.53777 * 87.08456 * 89.12843 * 20 15 14 22 22 C 1.53783 * 87.08064 * 25.43146 * 21 20 15 23 23 H 1.09004 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47347 * 299.99963 * 1 2 3 25 25 H 1.09000 * 109.47074 * 60.00006 * 1 2 3 26 26 H 1.09001 * 109.47074 * 185.00086 * 4 2 1 27 27 H 1.09003 * 109.46599 * 304.99349 * 4 2 1 28 28 H 0.97005 * 120.00517 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47130 * 175.00325 * 13 2 1 30 30 H 1.08997 * 109.46590 * 55.00345 * 13 2 1 31 31 H 1.00900 * 111.00578 * 56.63698 * 14 13 2 32 32 H 1.09002 * 109.46739 * 172.59085 * 16 15 14 33 33 H 1.09001 * 109.46859 * 52.59979 * 16 15 14 34 34 H 1.09000 * 109.46722 * 179.97438 * 18 17 16 35 35 H 1.08994 * 109.47253 * 299.99714 * 18 17 16 36 36 H 1.09002 * 109.46890 * 60.00013 * 18 17 16 37 37 H 1.09002 * 109.47330 * 309.75746 * 19 17 16 38 38 H 1.08993 * 109.47338 * 69.76033 * 19 17 16 39 39 H 1.09004 * 109.46856 * 189.76076 * 19 17 16 40 40 H 1.09005 * 113.61511 * 203.68117 * 20 15 14 41 41 H 1.08999 * 113.61316 * 334.57373 * 20 15 14 42 42 H 1.09001 * 113.61206 * 270.88873 * 21 20 15 43 43 H 1.08999 * 113.69334 * 139.99405 * 21 20 15 44 44 H 1.09002 * 113.61680 * 220.01980 * 22 21 20 45 45 H 1.08997 * 113.61481 * 89.11998 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9933 -0.4016 -3.7282 8 7 1.6458 0.2778 -4.7993 9 14 2.9638 -1.9882 -3.9028 10 1 2.0246 -3.1325 -4.0201 11 1 3.8128 -1.9179 -5.1191 12 1 3.8254 -2.1755 -2.7079 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1374 -0.6194 3.6664 16 6 1.5036 -1.9931 3.8946 17 7 0.0740 -1.8299 4.1904 18 6 -0.6503 -3.0938 4.0014 19 6 -0.1261 -1.3063 5.5483 20 6 3.6693 -0.6176 3.8010 21 6 3.5259 0.7334 4.5213 22 6 2.1059 0.2874 4.9081 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.1264 -0.7994 -1.2056 27 1 1.6055 -1.7198 -1.2951 28 1 1.8931 -0.0450 -5.6799 29 1 3.1263 -0.7994 1.2057 30 1 1.6054 -1.7197 1.2951 31 1 0.6518 0.1709 2.4803 32 1 1.9946 -2.4848 4.7344 33 1 1.6219 -2.6013 2.9978 34 1 -1.7062 -2.9447 4.2275 35 1 -0.5427 -3.4233 2.9681 36 1 -0.2396 -3.8513 4.6690 37 1 0.4490 -1.9030 6.2563 38 1 0.2083 -0.2698 5.5910 39 1 -1.1842 -1.3575 5.8051 40 1 4.0525 -1.4141 4.4389 41 1 4.1913 -0.5503 2.8465 42 1 3.5462 1.5911 3.8489 43 1 4.1950 0.8483 5.3741 44 1 1.3658 1.0854 4.8474 45 1 2.0617 -0.2616 5.8487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602647106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:59 Heat of formation + Delta-G solvation = -2.365105 kcal Electronic energy + Delta-G solvation = -20036.445266 eV Core-core repulsion = 17281.416924 eV Total energy + Delta-G solvation = -2755.028341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98322 -37.75540 -37.23072 -34.78336 -33.00510 -29.63789 -28.84922 -28.75975 -27.06895 -26.07503 -24.56381 -23.74426 -21.95240 -20.60605 -19.57201 -18.92936 -17.11945 -16.78179 -16.37057 -16.22797 -15.97219 -15.51638 -15.40994 -14.96469 -14.63353 -14.10806 -13.97627 -13.71786 -13.43851 -13.28809 -13.13769 -13.08555 -12.88240 -12.75195 -12.57941 -12.43099 -12.06991 -12.04790 -11.72711 -11.58574 -11.44421 -11.29627 -11.10410 -10.93421 -10.81540 -10.72742 -9.42881 -9.02152 -8.25014 -6.26962 1.35209 1.37279 1.49179 2.38237 2.95199 3.10130 3.30289 3.73405 3.87578 4.00337 4.06696 4.20849 4.29070 4.32627 4.43355 4.44882 4.48509 4.53705 4.61450 4.72466 4.77424 4.85684 4.87381 4.91358 4.92202 4.98889 5.05046 5.07178 5.09955 5.16002 5.24332 5.32359 5.39473 5.48340 5.54886 5.60661 5.73469 5.75299 6.06507 6.10919 6.31993 6.40132 6.66392 6.80487 7.36365 8.91893 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.025402 B = 0.004962 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.031307 B = 5641.862301 C = 5980.016702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 H 0.051 0.949 4 C -0.004 4.004 5 C -0.517 4.517 6 H 0.034 0.966 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.249 1.249 13 C 0.081 3.919 14 N -0.659 5.659 15 C 0.092 3.908 16 C 0.038 3.962 17 N -0.555 5.555 18 C 0.026 3.974 19 C 0.014 3.986 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.114 4.114 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.264 0.736 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.348 0.652 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.030 0.970 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -6.221 24.703 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.042 4.042 5 C -0.555 4.555 6 H 0.053 0.947 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.172 1.172 13 C -0.048 4.048 14 N -0.290 5.290 15 C -0.001 4.001 16 C -0.092 4.092 17 N -0.279 5.279 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.172 4.172 21 C -0.165 4.165 22 C -0.152 4.152 23 H 0.064 0.936 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.169 0.831 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.467 -5.442 24.160 24.770 hybrid contribution -0.073 -1.797 -0.444 1.853 sum 0.394 -7.240 23.717 24.800 Atomic orbital electron populations 1.21590 0.95409 1.00644 1.00348 1.20861 0.95849 0.98877 0.93160 0.93087 1.19537 0.95799 0.95516 0.93359 1.21449 1.34201 1.08652 0.91217 0.94734 1.25979 0.96996 1.00902 0.95514 1.70072 1.49163 1.41609 0.98685 0.85708 0.79385 0.79626 0.78218 1.19323 1.21080 1.17211 1.21770 0.99482 0.94397 0.89150 1.60507 1.19929 1.48566 1.00033 1.22090 0.94936 0.91654 0.91384 1.22700 0.88171 0.98072 1.00210 1.61840 1.09930 1.28517 1.27625 1.22392 0.99103 0.89794 1.00955 1.22786 1.01823 1.01493 0.87279 1.23052 0.94422 0.98906 1.00826 1.22652 0.97232 0.96703 0.99867 1.23030 0.97247 0.98693 0.96220 0.93646 0.91951 0.94849 0.96752 0.96805 0.92695 0.92075 0.95632 0.83106 0.93521 0.92306 0.90531 0.92470 0.95303 0.95144 0.89738 0.91230 0.88839 0.92557 0.91182 0.90628 0.91260 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.67 8.77 71.98 0.63 -4.04 16 2 C -0.07 -2.76 2.54 -10.79 -0.03 -2.78 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.00 -0.20 3.52 29.85 0.10 -0.10 16 5 C -0.52 -30.41 8.96 25.60 0.23 -30.18 16 6 H 0.03 2.24 7.30 -2.91 -0.02 2.22 16 7 C 0.00 0.13 5.47 84.66 0.46 0.59 16 8 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 9 Si 0.95 45.42 27.47 68.60 1.88 47.30 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 13 C 0.08 2.63 4.74 86.30 0.41 3.04 16 14 N -0.66 -18.16 6.24 -467.59 -2.92 -21.08 16 15 C 0.09 2.01 0.70 4.05 0.00 2.01 16 16 C 0.04 0.80 4.50 86.30 0.39 1.19 16 17 N -0.56 -10.99 4.79 -948.85 -4.55 -15.54 16 18 C 0.03 0.46 9.51 127.69 1.21 1.68 16 19 C 0.01 0.21 8.44 127.69 1.08 1.29 16 20 C -0.13 -2.79 7.17 31.12 0.22 -2.57 16 21 C -0.13 -2.45 8.00 31.12 0.25 -2.20 16 22 C -0.11 -2.05 5.04 31.12 0.16 -1.89 16 23 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.06 2.02 6.69 -2.39 -0.02 2.01 16 25 H 0.03 1.46 6.95 -2.39 -0.02 1.44 16 26 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 27 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 28 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 29 H 0.06 2.02 6.68 -2.39 -0.02 2.01 16 30 H 0.03 0.82 6.58 -2.39 -0.02 0.81 16 31 H 0.35 9.79 6.91 -89.69 -0.62 9.17 16 32 H 0.05 0.87 7.74 -2.39 -0.02 0.85 16 33 H 0.06 1.42 6.32 -2.39 -0.02 1.40 16 34 H 0.08 1.22 8.02 -2.39 -0.02 1.20 16 35 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 36 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.03 0.42 7.89 -2.39 -0.02 0.40 16 38 H 0.08 1.28 4.82 -2.39 -0.01 1.27 16 39 H 0.07 0.97 7.94 -2.39 -0.02 0.95 16 40 H 0.09 1.61 8.02 -2.38 -0.02 1.59 16 41 H 0.06 1.39 6.75 -2.39 -0.02 1.38 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 45 H 0.10 1.38 6.85 -2.39 -0.02 1.37 16 Total: -1.00 -65.20 335.55 0.11 -65.09 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.27 Total: 19.06 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 5.12 Total: -33.97 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -7.16 Total: -97.48 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -65.20 0.11 -65.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602647106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.726 kcal (2) G-P(sol) polarization free energy of solvation -65.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds