Wall clock time and date at job start Sun Mar 29 2020 23:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46914 * 2 1 4 4 C 1.53007 * 109.47169 * 119.99291 * 2 1 3 5 5 C 1.50694 * 109.47125 * 295.00384 * 4 2 1 6 6 H 1.08004 * 120.00507 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99764 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99844 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46870 * 89.99850 * 9 7 5 11 11 H 1.48498 * 109.47106 * 209.99871 * 9 7 5 12 12 H 1.48496 * 109.47221 * 330.00242 * 9 7 5 13 13 C 1.52992 * 109.47198 * 239.99472 * 2 1 3 14 14 N 1.46898 * 109.47202 * 65.00136 * 13 2 1 15 15 C 1.46906 * 111.00380 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.47202 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.46837 * 179.97438 * 16 15 14 18 18 C 1.47436 * 110.99898 * 69.87309 * 17 16 15 19 19 C 1.54324 * 107.23089 * 123.25894 * 18 17 16 20 20 C 1.55140 * 103.01888 * 22.28261 * 19 18 17 21 21 C 1.47851 * 110.99786 * 190.71864 * 17 16 15 22 22 H 1.08997 * 110.37354 * 332.46432 * 21 17 16 23 23 C 1.52999 * 110.37286 * 94.80531 * 21 17 16 24 24 H 1.09001 * 109.47221 * 60.00927 * 1 2 3 25 25 H 1.09008 * 109.46686 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47237 * 300.00479 * 1 2 3 27 27 H 1.09005 * 109.46523 * 55.00215 * 4 2 1 28 28 H 1.08997 * 109.46730 * 174.99883 * 4 2 1 29 29 H 0.96994 * 120.00129 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47279 * 304.99555 * 13 2 1 31 31 H 1.09002 * 109.47291 * 184.99821 * 13 2 1 32 32 H 1.00906 * 111.00000 * 303.94926 * 14 13 2 33 33 H 1.09004 * 109.46908 * 59.99194 * 15 14 13 34 34 H 1.08999 * 109.46891 * 300.00004 * 15 14 13 35 35 H 1.09003 * 109.47161 * 60.00158 * 16 15 14 36 36 H 1.08999 * 109.47425 * 299.99952 * 16 15 14 37 37 H 1.08998 * 109.88931 * 242.66034 * 18 17 16 38 38 H 1.09003 * 109.89178 * 3.85625 * 18 17 16 39 39 H 1.08995 * 110.70829 * 140.66528 * 19 18 17 40 40 H 1.09006 * 110.70516 * 263.89850 * 19 18 17 41 41 H 1.08996 * 110.99132 * 82.43912 * 20 19 18 42 42 H 1.09002 * 110.98829 * 206.21612 * 20 19 18 43 43 H 1.08998 * 109.47127 * 60.00175 * 23 21 17 44 44 H 1.09001 * 109.47077 * 180.02562 * 23 21 17 45 45 H 1.09002 * 109.47242 * 299.99936 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9748 2.3757 7 6 1.9933 -0.4014 3.7283 8 7 2.6765 -1.5184 3.8513 9 14 1.4996 0.5638 5.2496 10 1 0.1724 0.0957 5.7238 11 1 2.5093 0.3541 6.3181 12 1 1.4245 2.0089 4.9162 13 6 2.0400 -0.7213 -1.2491 14 7 1.6514 0.0372 -2.4456 15 6 2.1248 -0.6274 -3.6672 16 6 1.7014 0.1899 -4.8892 17 7 2.1754 -0.4745 -6.1107 18 6 1.4347 -1.7261 -6.3527 19 6 0.8063 -1.6211 -7.7583 20 6 1.6937 -0.5590 -8.4593 21 6 2.0129 0.4041 -7.2888 22 1 1.1875 1.0988 -7.1331 23 6 3.3089 1.1684 -7.5661 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7993 1.2057 29 1 2.9237 -1.8412 4.7319 30 1 1.6055 -1.7199 -1.2949 31 1 3.1264 -0.7995 -1.2055 32 1 0.6528 0.1791 -2.4753 33 1 1.6905 -1.6252 -3.7295 34 1 3.2117 -0.7054 -3.6405 35 1 2.1355 1.1879 -4.8271 36 1 0.6145 0.2675 -4.9157 37 1 2.1179 -2.5746 -6.3145 38 1 0.6512 -1.8441 -5.6042 39 1 0.8650 -2.5767 -8.2791 40 1 -0.2266 -1.2787 -7.6941 41 1 2.6044 -1.0098 -8.8535 42 1 1.1411 -0.0471 -9.2473 43 1 4.1142 0.4598 -7.7598 44 1 3.1728 1.8109 -8.4360 45 1 3.5630 1.7792 -6.6998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877154745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:21 Heat of formation + Delta-G solvation = -22.861733 kcal Electronic energy + Delta-G solvation = -18835.523790 eV Core-core repulsion = 16079.606649 eV Total energy + Delta-G solvation = -2755.917142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49983 -36.97936 -34.42097 -32.55321 -31.60295 -31.36840 -27.70176 -26.66608 -25.86867 -24.75252 -22.63830 -21.98670 -20.80243 -20.18967 -18.88060 -16.67010 -16.43682 -15.80384 -15.46817 -14.62697 -14.41465 -14.14868 -13.98683 -13.83069 -13.54156 -13.01523 -12.68023 -12.44056 -12.38262 -12.04799 -11.83360 -11.73761 -11.44786 -11.39366 -11.17358 -11.05020 -10.91807 -10.86936 -10.83032 -10.68929 -10.30372 -10.16216 -9.68456 -9.12430 -8.93528 -8.51745 -8.30628 -8.10439 -5.95209 -3.96308 3.34571 3.40872 3.44482 3.62091 4.31223 4.36915 4.49305 4.62873 4.77489 4.95524 5.09157 5.11323 5.18919 5.21753 5.40517 5.43032 5.44714 5.52360 5.57983 5.63270 5.68750 5.77898 5.79675 5.83846 5.92700 6.00987 6.03161 6.08572 6.13096 6.29732 6.49551 6.58925 6.81940 6.91537 6.99515 7.12838 7.20351 7.41144 7.68584 7.73315 7.89260 8.05321 8.49175 9.10135 9.66943 11.16392 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.052063 B = 0.002913 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.676179 B = 9610.183188 C = 9700.065780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.067 3.933 14 N -0.691 5.691 15 C 0.064 3.936 16 C 0.055 3.945 17 N -0.526 5.526 18 C 0.041 3.959 19 C -0.144 4.144 20 C -0.125 4.125 21 C 0.068 3.932 22 H 0.053 0.947 23 C -0.135 4.135 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.259 0.741 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.335 0.665 33 H 0.023 0.977 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.077 1.461 -24.165 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.062 4.062 14 N -0.323 5.323 15 C -0.066 4.066 16 C -0.073 4.073 17 N -0.251 5.251 18 C -0.087 4.087 19 C -0.182 4.182 20 C -0.163 4.163 21 C -0.040 4.040 22 H 0.071 0.929 23 C -0.193 4.193 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.153 0.847 33 H 0.042 0.958 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.925 1.661 -23.911 24.046 hybrid contribution -1.740 -0.209 0.855 1.950 sum -3.665 1.451 -23.056 23.390 Atomic orbital electron populations 1.21741 0.96759 1.00375 1.00221 1.21228 0.94810 1.00127 0.94184 0.91621 1.19111 0.96171 0.95342 0.90351 1.21244 1.34571 1.08260 0.90999 0.92567 1.25025 0.95338 0.95120 0.99100 1.69964 1.39088 1.21303 1.23348 0.86630 0.78166 0.80470 0.82953 1.20782 1.21297 1.19880 1.22118 1.00414 0.94312 0.89356 1.60524 1.19306 1.50827 1.01617 1.21875 1.01364 0.94562 0.88816 1.22227 0.97234 0.98660 0.89207 1.63425 1.54879 1.04411 1.02353 1.22855 0.96407 0.93606 0.95860 1.22792 0.99140 0.99852 0.96418 1.22758 1.00015 0.96443 0.97073 1.22556 0.97546 0.94286 0.89646 0.92863 1.21693 0.96816 0.99666 1.01090 0.95025 0.94081 0.91865 0.96784 0.96621 0.93106 0.95927 0.91405 0.84700 0.95837 0.90397 0.89994 0.95105 0.90499 0.92650 0.90785 0.91649 0.90536 0.91033 0.91992 0.92609 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.07 1.20 5.14 -3.83 -0.02 1.18 16 14 N -0.69 -10.55 6.50 -113.78 -0.74 -11.29 16 15 C 0.06 0.85 5.71 -3.82 -0.02 0.82 16 16 C 0.06 0.63 4.80 -3.82 -0.02 0.61 16 17 N -0.53 -5.55 4.81 -223.38 -1.07 -6.62 16 18 C 0.04 0.38 6.21 -2.84 -0.02 0.37 16 19 C -0.14 -1.10 6.94 -24.91 -0.17 -1.27 16 20 C -0.12 -0.93 6.49 -24.59 -0.16 -1.09 16 21 C 0.07 0.61 3.01 -66.19 -0.20 0.41 16 22 H 0.05 0.48 7.81 -51.93 -0.41 0.08 16 23 C -0.13 -1.12 9.59 37.16 0.36 -0.77 16 24 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 25 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.33 4.81 6.98 -39.29 -0.27 4.54 16 33 H 0.02 0.31 7.14 -51.93 -0.37 -0.06 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.03 0.34 7.96 -51.93 -0.41 -0.07 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.55 6.91 -51.93 -0.36 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.56 8.04 -51.93 -0.42 0.15 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -29.68 348.88 -10.30 -39.99 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.79 Total: -1.00 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.67 Total: -16.66 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -1.08 Total: -44.46 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.68 -10.30 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877154745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.124 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds