Wall clock time and date at job start Sun Mar 29 2020 23:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46914 * 2 1 4 4 C 1.53007 * 109.47169 * 119.99291 * 2 1 3 5 5 C 1.50694 * 109.47125 * 295.00384 * 4 2 1 6 6 H 1.08004 * 120.00507 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99764 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99844 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46870 * 89.99850 * 9 7 5 11 11 H 1.48498 * 109.47106 * 209.99871 * 9 7 5 12 12 H 1.48496 * 109.47221 * 330.00242 * 9 7 5 13 13 C 1.52992 * 109.47198 * 239.99472 * 2 1 3 14 14 N 1.46898 * 109.47202 * 65.00136 * 13 2 1 15 15 C 1.46906 * 111.00380 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.47202 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.46837 * 179.97438 * 16 15 14 18 18 C 1.47436 * 110.99898 * 69.87309 * 17 16 15 19 19 C 1.54324 * 107.23089 * 123.25894 * 18 17 16 20 20 C 1.55140 * 103.01888 * 22.28261 * 19 18 17 21 21 C 1.47851 * 110.99786 * 190.71864 * 17 16 15 22 22 H 1.08997 * 110.37354 * 332.46432 * 21 17 16 23 23 C 1.52999 * 110.37286 * 94.80531 * 21 17 16 24 24 H 1.09001 * 109.47221 * 60.00927 * 1 2 3 25 25 H 1.09008 * 109.46686 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47237 * 300.00479 * 1 2 3 27 27 H 1.09005 * 109.46523 * 55.00215 * 4 2 1 28 28 H 1.08997 * 109.46730 * 174.99883 * 4 2 1 29 29 H 0.96994 * 120.00129 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47279 * 304.99555 * 13 2 1 31 31 H 1.09002 * 109.47291 * 184.99821 * 13 2 1 32 32 H 1.00906 * 111.00000 * 303.94926 * 14 13 2 33 33 H 1.09004 * 109.46908 * 59.99194 * 15 14 13 34 34 H 1.08999 * 109.46891 * 300.00004 * 15 14 13 35 35 H 1.09003 * 109.47161 * 60.00158 * 16 15 14 36 36 H 1.08999 * 109.47425 * 299.99952 * 16 15 14 37 37 H 1.08998 * 109.88931 * 242.66034 * 18 17 16 38 38 H 1.09003 * 109.89178 * 3.85625 * 18 17 16 39 39 H 1.08995 * 110.70829 * 140.66528 * 19 18 17 40 40 H 1.09006 * 110.70516 * 263.89850 * 19 18 17 41 41 H 1.08996 * 110.99132 * 82.43912 * 20 19 18 42 42 H 1.09002 * 110.98829 * 206.21612 * 20 19 18 43 43 H 1.08998 * 109.47127 * 60.00175 * 23 21 17 44 44 H 1.09001 * 109.47077 * 180.02562 * 23 21 17 45 45 H 1.09002 * 109.47242 * 299.99936 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9748 2.3757 7 6 1.9933 -0.4014 3.7283 8 7 2.6765 -1.5184 3.8513 9 14 1.4996 0.5638 5.2496 10 1 0.1724 0.0957 5.7238 11 1 2.5093 0.3541 6.3181 12 1 1.4245 2.0089 4.9162 13 6 2.0400 -0.7213 -1.2491 14 7 1.6514 0.0372 -2.4456 15 6 2.1248 -0.6274 -3.6672 16 6 1.7014 0.1899 -4.8892 17 7 2.1754 -0.4745 -6.1107 18 6 1.4347 -1.7261 -6.3527 19 6 0.8063 -1.6211 -7.7583 20 6 1.6937 -0.5590 -8.4593 21 6 2.0129 0.4041 -7.2888 22 1 1.1875 1.0988 -7.1331 23 6 3.3089 1.1684 -7.5661 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7993 1.2057 29 1 2.9237 -1.8412 4.7319 30 1 1.6055 -1.7199 -1.2949 31 1 3.1264 -0.7995 -1.2055 32 1 0.6528 0.1791 -2.4753 33 1 1.6905 -1.6252 -3.7295 34 1 3.2117 -0.7054 -3.6405 35 1 2.1355 1.1879 -4.8271 36 1 0.6145 0.2675 -4.9157 37 1 2.1179 -2.5746 -6.3145 38 1 0.6512 -1.8441 -5.6042 39 1 0.8650 -2.5767 -8.2791 40 1 -0.2266 -1.2787 -7.6941 41 1 2.6044 -1.0098 -8.8535 42 1 1.1411 -0.0471 -9.2473 43 1 4.1142 0.4598 -7.7598 44 1 3.1728 1.8109 -8.4360 45 1 3.5630 1.7792 -6.6998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877154745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:21 Heat of formation + Delta-G solvation = -41.622894 kcal Electronic energy + Delta-G solvation = -18836.337336 eV Core-core repulsion = 16079.606649 eV Total energy + Delta-G solvation = -2756.730687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25729 -38.44698 -35.94841 -34.28849 -32.66239 -32.26393 -29.23774 -28.22198 -26.67052 -26.23517 -24.19598 -23.18058 -21.59460 -20.97545 -20.55303 -18.53559 -17.45413 -16.96308 -16.61050 -16.43976 -15.55704 -15.39945 -15.08056 -14.79704 -14.60485 -14.34820 -13.99851 -13.74315 -13.63627 -13.31201 -13.10785 -12.85012 -12.76040 -12.69846 -12.57291 -12.25394 -12.17658 -12.01099 -11.89436 -11.87637 -11.61115 -11.51705 -11.47766 -11.07561 -10.91731 -10.53544 -9.39935 -9.29427 -8.17378 -6.26722 1.40300 1.41625 1.52740 2.42150 2.75806 3.16008 3.44288 3.70844 3.78710 3.99040 4.12436 4.14055 4.25616 4.28371 4.30670 4.45795 4.48808 4.52811 4.57420 4.72809 4.78655 4.82913 4.85690 4.90426 4.98966 4.99421 5.00335 5.03318 5.10407 5.18950 5.23436 5.34428 5.37789 5.42235 5.47771 5.55066 5.79183 5.88923 6.00298 6.10224 6.14902 6.30887 6.48837 6.89327 7.41595 8.94896 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.052063 B = 0.002913 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.676179 B = 9610.183188 C = 9700.065780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.057 0.943 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.079 3.921 14 N -0.689 5.689 15 C 0.069 3.931 16 C 0.066 3.934 17 N -0.539 5.539 18 C 0.036 3.964 19 C -0.139 4.139 20 C -0.120 4.120 21 C 0.063 3.937 22 H 0.054 0.946 23 C -0.132 4.132 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.046 0.954 27 H -0.010 1.010 28 H -0.014 1.014 29 H 0.262 0.738 30 H 0.022 0.978 31 H 0.055 0.945 32 H 0.344 0.656 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 2.472 -25.433 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.095 4.095 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.050 4.050 14 N -0.321 5.321 15 C -0.060 4.060 16 C -0.063 4.063 17 N -0.264 5.264 18 C -0.091 4.091 19 C -0.177 4.177 20 C -0.158 4.158 21 C -0.045 4.045 22 H 0.072 0.928 23 C -0.190 4.190 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.008 0.992 28 H 0.004 0.996 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.215 2.682 -25.204 25.549 hybrid contribution -1.303 -0.553 1.205 1.859 sum -4.517 2.129 -23.999 24.513 Atomic orbital electron populations 1.21649 0.94842 1.00666 1.01184 1.21025 0.96340 0.99006 0.93107 0.92441 1.19005 0.94187 0.94592 0.92721 1.21645 1.34445 1.08581 0.92033 0.91998 1.25976 0.95236 0.96134 1.02725 1.70103 1.40293 1.23046 1.24293 0.85487 0.78009 0.79277 0.78530 1.19784 1.20945 1.18744 1.21815 0.99537 0.94170 0.89471 1.60426 1.19995 1.50453 1.01268 1.21831 1.00527 0.94957 0.88697 1.22042 0.97442 0.97924 0.88865 1.63409 1.55328 1.05065 1.02595 1.22887 0.96194 0.92984 0.97060 1.22776 0.99171 1.00590 0.95198 1.22752 1.00209 0.96022 0.96800 1.22654 0.97761 0.94457 0.89584 0.92836 1.21674 0.96423 0.99560 1.01300 0.91459 0.94113 0.93446 0.99210 0.99603 0.92928 0.95961 0.92644 0.83710 0.95590 0.91669 0.90551 0.94476 0.90956 0.93158 0.89649 0.91227 0.90496 0.89410 0.92528 0.90893 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.77 71.98 0.63 -3.99 16 2 C -0.08 -3.18 2.55 -10.79 -0.03 -3.20 16 3 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -30.35 8.41 25.60 0.22 -30.14 16 6 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 9 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 13 C 0.08 2.86 5.14 86.30 0.44 3.30 16 14 N -0.69 -20.26 6.50 -513.89 -3.34 -23.60 16 15 C 0.07 1.79 5.71 86.30 0.49 2.28 16 16 C 0.07 1.43 4.80 86.30 0.41 1.84 16 17 N -0.54 -10.73 4.81 -860.64 -4.14 -14.87 16 18 C 0.04 0.64 6.21 86.65 0.54 1.18 16 19 C -0.14 -1.82 6.94 31.78 0.22 -1.60 16 20 C -0.12 -1.50 6.49 31.98 0.21 -1.30 16 21 C 0.06 1.02 3.01 45.38 0.14 1.16 16 22 H 0.05 0.87 7.81 -2.39 -0.02 0.85 16 23 C -0.13 -2.02 9.59 71.98 0.69 -1.33 16 24 H 0.07 1.98 6.68 -2.39 -0.02 1.96 16 25 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 27 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 28 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.34 9.13 6.98 -89.69 -0.63 8.50 16 33 H 0.03 0.67 7.14 -2.38 -0.02 0.65 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 1.74 8.07 -2.39 -0.02 1.72 16 36 H 0.04 0.76 7.96 -2.39 -0.02 0.74 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 0.93 6.91 -2.39 -0.02 0.91 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.08 0.97 8.04 -2.39 -0.02 0.95 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -63.95 348.88 -0.32 -64.27 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.29 Total: 14.69 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 4.56 Total: -29.67 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -7.20 Total: -96.26 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.95 -0.32 -64.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877154745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.646 kcal (2) G-P(sol) polarization free energy of solvation -63.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds