Wall clock time and date at job start Sun Mar 29 2020 23:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47027 * 2 1 4 4 C 1.52998 * 109.47133 * 239.99351 * 2 1 3 5 5 C 1.53000 * 109.47128 * 175.00454 * 4 2 1 6 6 C 1.50700 * 109.47343 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99622 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99870 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00223 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99625 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47213 * 60.00037 * 10 8 6 12 12 H 1.48500 * 109.46705 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47281 * 299.99772 * 10 8 6 14 14 N 1.46904 * 109.46664 * 119.99707 * 2 1 3 15 15 C 1.46905 * 110.99675 * 274.99917 * 14 2 1 16 16 C 1.52999 * 109.46681 * 180.02562 * 15 14 2 17 17 H 1.09000 * 109.50461 * 304.91751 * 16 15 14 18 18 C 1.53124 * 109.50158 * 184.80136 * 16 15 14 19 19 C 1.53116 * 109.16455 * 182.40327 * 18 16 15 20 20 C 1.53041 * 109.27487 * 57.65191 * 19 18 16 21 21 N 1.46840 * 109.52578 * 300.82408 * 20 19 18 22 22 C 1.46906 * 110.99943 * 185.83789 * 21 20 19 23 23 C 1.46843 * 111.20052 * 61.74223 * 21 20 19 24 24 H 1.08995 * 109.47027 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47082 * 300.00588 * 1 2 3 26 26 H 1.09005 * 109.46857 * 60.00830 * 1 2 3 27 27 H 1.09000 * 109.47465 * 295.00116 * 4 2 1 28 28 H 1.09000 * 109.47461 * 55.00281 * 4 2 1 29 29 H 1.09010 * 109.46718 * 300.00067 * 5 4 2 30 30 H 1.09000 * 109.47090 * 59.99600 * 5 4 2 31 31 H 0.96995 * 119.99959 * 180.02562 * 9 8 6 32 32 H 1.00900 * 111.00149 * 38.95270 * 14 2 1 33 33 H 1.08995 * 109.47244 * 60.00362 * 15 14 2 34 34 H 1.08999 * 109.47209 * 300.00067 * 15 14 2 35 35 H 1.09000 * 109.52312 * 302.31572 * 18 16 15 36 36 H 1.09001 * 109.51976 * 62.43349 * 18 16 15 37 37 H 1.08996 * 109.50677 * 177.59630 * 19 18 16 38 38 H 1.09008 * 109.49918 * 297.67857 * 19 18 16 39 39 H 1.09000 * 109.46125 * 180.80438 * 20 19 18 40 40 H 1.08999 * 109.45863 * 60.84334 * 20 19 18 41 41 H 1.08992 * 109.47459 * 295.78862 * 22 21 20 42 42 H 1.09004 * 109.47040 * 55.79013 * 22 21 20 43 43 H 1.09000 * 109.47033 * 175.78965 * 22 21 20 44 44 H 1.09003 * 109.46140 * 58.27228 * 23 21 20 45 45 H 1.09001 * 109.46577 * 178.25031 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 6 4.0672 -1.3235 -2.5442 7 1 3.3687 -1.8040 -3.2133 8 6 5.4186 -1.3605 -2.8154 9 7 6.2691 -0.7759 -2.0004 10 14 6.0412 -2.2412 -4.3406 11 1 5.4496 -1.6149 -5.5501 12 1 7.5212 -2.1364 -4.4031 13 1 5.6479 -3.6720 -4.2813 14 7 2.0196 -0.6925 1.1995 15 6 2.0824 0.2228 2.3469 16 6 2.5960 -0.5327 3.5743 17 1 1.9702 -1.4073 3.7515 18 6 2.5487 0.3872 4.7975 19 6 3.1200 -0.3563 6.0080 20 6 4.5488 -0.8070 5.6958 21 7 4.5405 -1.6848 4.5187 22 6 5.8750 -2.2474 4.2721 23 6 4.0401 -0.9781 3.3328 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.7517 -1.7716 -1.2054 28 1 1.6055 -0.2620 -2.1370 29 1 3.8533 0.4368 -1.3573 30 1 3.9994 -1.0729 -0.4257 31 1 7.2197 -0.8016 -2.1914 32 1 1.4495 -1.4979 1.4102 33 1 1.0870 0.6165 2.5525 34 1 2.7588 1.0463 2.1182 35 1 3.1429 1.2804 4.6048 36 1 1.5162 0.6731 4.9985 37 1 3.1284 0.3077 6.8723 38 1 2.5021 -1.2279 6.2245 39 1 4.9535 -1.3492 6.5504 40 1 5.1689 0.0663 5.4933 41 1 6.5685 -1.4435 4.0258 42 1 6.2218 -2.7653 5.1664 43 1 5.8247 -2.9511 3.4412 44 1 4.6626 -0.1040 3.1413 45 1 4.0751 -1.6447 2.4710 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:57 Heat of formation + Delta-G solvation = -26.757446 kcal Electronic energy + Delta-G solvation = -19660.626350 eV Core-core repulsion = 16904.540277 eV Total energy + Delta-G solvation = -2756.086073 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.12709 -37.03469 -34.13940 -32.99201 -31.95968 -29.96496 -28.54338 -26.63748 -25.24032 -24.46641 -22.65699 -21.41166 -21.08366 -19.98021 -19.26704 -16.09106 -15.71787 -15.32133 -15.16526 -14.60894 -14.49556 -14.34620 -14.09114 -13.42929 -13.26143 -12.80044 -12.61069 -12.38850 -12.21449 -12.01515 -11.97709 -11.79879 -11.34731 -11.30418 -11.11322 -10.95481 -10.81253 -10.53191 -10.45790 -10.35743 -10.21486 -9.95902 -9.57917 -9.16275 -8.87429 -8.20171 -8.17358 -7.78767 -5.85966 -3.86766 3.40144 3.44156 3.46898 4.07153 4.48031 4.56299 4.86851 4.91136 5.06414 5.14414 5.36393 5.43689 5.49109 5.49656 5.55621 5.62203 5.63874 5.67083 5.73052 5.76558 5.85458 5.88544 5.95555 6.00027 6.07069 6.11111 6.14660 6.20417 6.31507 6.46666 6.50757 6.53274 6.74190 6.94287 7.23861 7.26739 7.36024 7.58426 7.87399 7.89924 8.11663 8.26809 8.61025 9.22112 9.75617 11.25041 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.017932 B = 0.005357 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.070924 B = 5225.344535 C = 6537.483349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.886 3.114 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 N -0.670 5.670 15 C 0.066 3.934 16 C -0.078 4.078 17 H 0.074 0.926 18 C -0.117 4.117 19 C -0.114 4.114 20 C 0.053 3.947 21 N -0.546 5.546 22 C 0.026 3.974 23 C 0.068 3.932 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.005 0.995 30 H 0.032 0.968 31 H 0.258 0.742 32 H 0.334 0.666 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 1.595 15.326 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.088 0.912 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.300 5.300 15 C -0.064 4.064 16 C -0.098 4.098 17 H 0.092 0.908 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.075 4.075 21 N -0.270 5.270 22 C -0.122 4.122 23 C -0.060 4.060 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.024 0.976 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.152 0.848 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.975 1.325 15.276 16.845 hybrid contribution 0.070 0.354 -0.845 0.919 sum -6.905 1.679 14.430 16.085 Atomic orbital electron populations 1.22532 0.98749 1.01471 1.01123 1.21719 0.90810 0.98282 0.91732 0.91217 1.21624 1.00569 0.98361 0.93065 1.18977 0.88334 0.96353 0.96936 1.21328 0.91816 1.34009 1.08484 0.93206 1.24980 0.97122 0.95782 0.96448 1.69963 1.02145 1.44457 1.36968 0.86762 0.77556 0.80336 0.83918 1.20447 1.21431 1.20360 1.60503 1.57524 1.08988 1.02971 1.21976 0.98444 0.95738 0.90256 1.21154 0.97049 0.98072 0.93485 0.90760 1.21617 1.00681 0.98295 0.94885 1.21545 0.96174 1.00054 0.97391 1.22082 0.96726 0.95018 0.93669 1.61949 1.24539 1.35807 1.04739 1.22325 0.88790 0.99250 1.01842 1.22087 0.94026 0.97556 0.92315 0.92815 0.93814 0.92399 0.93505 0.93682 0.97644 0.94932 0.93263 0.84787 0.95891 0.91260 0.92234 0.92123 0.91921 0.91286 0.91326 0.95229 0.95670 0.91982 0.90874 0.95045 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 9.16 37.16 0.34 -2.13 16 2 C 0.08 1.42 2.59 -67.71 -0.18 1.25 16 3 H 0.07 1.24 7.80 -51.93 -0.40 0.84 16 4 C -0.10 -2.05 4.83 -26.73 -0.13 -2.18 16 5 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 6 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 7 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 10 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.67 -10.73 5.17 -106.72 -0.55 -11.28 16 15 C 0.07 0.91 4.88 -3.82 -0.02 0.90 16 16 C -0.08 -1.01 2.50 -90.54 -0.23 -1.24 16 17 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.12 -1.28 5.29 -26.61 -0.14 -1.42 16 19 C -0.11 -1.16 6.09 -26.65 -0.16 -1.33 16 20 C 0.05 0.62 5.46 -3.84 -0.02 0.59 16 21 N -0.55 -7.49 4.91 -242.96 -1.19 -8.68 16 22 C 0.03 0.34 9.59 60.07 0.58 0.92 16 23 C 0.07 1.02 4.62 -3.84 -0.02 1.00 16 24 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 25 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 30 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.33 4.94 8.47 -39.29 -0.33 4.61 16 33 H 0.02 0.29 7.44 -51.93 -0.39 -0.10 16 34 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 1.69 7.76 -51.93 -0.40 1.29 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -30.36 349.60 -10.32 -40.68 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -9.03 Total: 0.39 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.52 Total: -16.75 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -1.01 Total: -46.76 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.36 -10.32 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.919 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds