Wall clock time and date at job start Sun Mar 29 2020 23:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 C 1.52998 * 109.46959 * 239.99679 * 2 1 3 5 5 C 1.52998 * 109.47214 * 174.99940 * 4 2 1 6 6 C 1.50703 * 109.47269 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99969 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99830 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99957 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99773 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47489 * 90.00199 * 10 8 6 12 12 H 1.48504 * 109.46952 * 209.99986 * 10 8 6 13 13 H 1.48505 * 109.47205 * 329.99735 * 10 8 6 14 14 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 15 15 C 1.46906 * 110.99888 * 274.99671 * 14 2 1 16 16 H 1.09004 * 109.52097 * 34.87445 * 15 14 2 17 17 C 1.53120 * 109.52292 * 274.68316 * 15 14 2 18 18 C 1.53037 * 109.27479 * 182.44129 * 17 15 14 19 19 N 1.46842 * 109.52527 * 59.18220 * 18 17 15 20 20 C 1.46901 * 110.99768 * 174.16185 * 19 18 17 21 21 C 1.46846 * 111.19511 * 298.25334 * 19 18 17 22 22 C 1.53035 * 109.52536 * 61.74475 * 21 19 18 23 23 H 1.09002 * 109.50108 * 60.76082 * 22 21 19 24 24 C 1.52993 * 109.53934 * 180.85560 * 22 21 19 25 25 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 27 27 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 28 28 H 1.08997 * 109.47741 * 294.99917 * 4 2 1 29 29 H 1.09007 * 109.47097 * 55.00745 * 4 2 1 30 30 H 1.09002 * 109.47191 * 300.00474 * 5 4 2 31 31 H 1.09007 * 109.46954 * 60.00361 * 5 4 2 32 32 H 0.97010 * 119.99567 * 179.97438 * 9 8 6 33 33 H 1.00902 * 111.00533 * 151.04078 * 14 2 1 34 34 H 1.08995 * 109.50222 * 302.38184 * 17 15 14 35 35 H 1.08993 * 109.50287 * 62.49901 * 17 15 14 36 36 H 1.09001 * 109.46112 * 299.16086 * 18 17 15 37 37 H 1.09006 * 109.45870 * 179.19821 * 18 17 15 38 38 H 1.09005 * 109.46660 * 184.20882 * 20 19 18 39 39 H 1.09005 * 109.47256 * 304.20083 * 20 19 18 40 40 H 1.08996 * 109.47612 * 64.20585 * 20 19 18 41 41 H 1.09000 * 109.46821 * 301.72483 * 21 19 18 42 42 H 1.09009 * 109.46192 * 181.76242 * 21 19 18 43 43 H 1.08999 * 109.47405 * 179.82075 * 24 22 21 44 44 H 1.09002 * 109.47565 * 299.82676 * 24 22 21 45 45 H 1.09008 * 109.47186 * 59.82657 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 1 3.3685 -1.8031 -3.2140 8 6 5.4183 -1.3603 -2.8158 9 7 6.2690 -0.7764 -2.0002 10 14 6.0408 -2.2397 -4.3418 11 1 6.0915 -1.2845 -5.4776 12 1 7.4019 -2.7749 -4.0840 13 1 5.1240 -3.3589 -4.6767 14 7 2.0196 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2592 0.9348 2.2903 17 6 3.4151 0.9763 2.3279 18 6 3.5006 1.8825 3.5581 19 7 3.3955 1.0684 4.7757 20 6 3.6119 1.8866 5.9763 21 6 2.1042 0.3722 4.8390 22 6 1.9770 -0.5792 3.6471 23 1 2.7770 -1.3186 3.6847 24 6 0.6227 -1.2890 3.7012 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7516 -1.7716 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0729 -0.4259 32 1 7.2197 -0.8028 -2.1910 33 1 2.9172 -1.1207 1.0287 34 1 4.2378 0.2615 2.3446 35 1 3.4775 1.5825 1.4243 36 1 2.6856 2.6060 3.5335 37 1 4.4545 2.4100 3.5551 38 1 3.6029 1.2466 6.8586 39 1 4.5754 2.3912 5.9034 40 1 2.8182 2.6292 6.0580 41 1 1.2958 1.1027 4.8085 42 1 2.0438 -0.1974 5.7665 43 1 0.5319 -1.9639 2.8501 44 1 0.5482 -1.8595 4.6270 45 1 -0.1770 -0.5491 3.6650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:16 Heat of formation + Delta-G solvation = -24.671575 kcal Electronic energy + Delta-G solvation = -19990.398408 eV Core-core repulsion = 17234.402785 eV Total energy + Delta-G solvation = -2755.995622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.45301 -36.82871 -34.15164 -32.83266 -31.84820 -29.82399 -28.78069 -26.83519 -25.42938 -24.77960 -22.53605 -21.46985 -21.19731 -19.83387 -19.22414 -16.35180 -15.85730 -15.27956 -15.21547 -14.63189 -14.51163 -14.21069 -14.14100 -13.52840 -12.82595 -12.51022 -12.48468 -12.44634 -12.32613 -12.15087 -11.82995 -11.78960 -11.52753 -11.23724 -11.16166 -10.95454 -10.89953 -10.56698 -10.55460 -10.41839 -10.31446 -9.96284 -9.70200 -9.23764 -8.99747 -8.35124 -8.33317 -7.83205 -5.98700 -4.00575 3.33036 3.39469 3.43075 3.91785 4.47569 4.55427 4.86487 4.93928 5.15266 5.16536 5.35243 5.37107 5.39797 5.50391 5.55581 5.58767 5.67208 5.69911 5.74835 5.78667 5.81547 5.86336 5.94308 6.03723 6.15482 6.20800 6.28494 6.40482 6.43976 6.51542 6.52495 6.57177 6.67294 6.95278 7.06083 7.09444 7.12500 7.61095 7.65456 7.83938 7.97474 8.03830 8.44886 9.06146 9.63552 11.12381 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.004996 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.583317 B = 5603.324696 C = 6343.078176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 H 0.036 0.964 4 C -0.114 4.114 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.679 5.679 15 C 0.095 3.905 16 H 0.066 0.934 17 C -0.148 4.148 18 C 0.062 3.938 19 N -0.544 5.544 20 C 0.026 3.974 21 C 0.062 3.938 22 C -0.076 4.076 23 H 0.078 0.922 24 C -0.134 4.134 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.011 0.989 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.353 0.647 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 4.414 13.858 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.026 4.026 3 H 0.054 0.946 4 C -0.152 4.152 5 C -0.015 4.015 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.312 5.312 15 C -0.016 4.016 16 H 0.085 0.915 17 C -0.187 4.187 18 C -0.067 4.067 19 N -0.268 5.268 20 C -0.122 4.122 21 C -0.066 4.066 22 C -0.096 4.096 23 H 0.097 0.903 24 C -0.192 4.192 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.040 0.960 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.197 3.828 14.011 17.192 hybrid contribution 0.698 0.846 -1.018 1.496 sum -8.499 4.674 12.993 16.214 Atomic orbital electron populations 1.21795 0.95982 1.01593 0.99929 1.21569 0.94252 0.96110 0.90706 0.94619 1.21823 0.99682 0.99401 0.94319 1.19110 0.88754 0.96740 0.96876 1.21245 0.91923 1.34281 1.08302 0.92751 1.25012 0.97088 0.95624 0.96640 1.69962 1.02327 1.44222 1.36925 0.86621 0.78153 0.79981 0.83411 1.20761 1.21252 1.19869 1.60677 1.34677 1.31785 1.04060 1.21597 0.95630 0.93100 0.91264 0.91548 1.22345 0.99711 0.99845 0.96797 1.22036 1.00524 0.94355 0.89738 1.61902 1.32694 1.30008 1.02183 1.22334 1.00630 0.96288 0.92969 1.22177 0.88937 0.96418 0.99092 1.21103 0.98730 0.97060 0.92683 0.90338 1.21652 0.95632 1.00252 1.01642 0.92425 0.93976 0.93244 0.92530 0.92954 0.97083 0.96570 0.93070 0.82508 0.90446 0.91209 0.95352 0.90927 0.91536 0.91477 0.96045 0.95308 0.90987 0.90752 0.93793 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.40 37.15 0.35 -1.63 16 2 C 0.08 1.43 2.46 -67.72 -0.17 1.26 16 3 H 0.04 0.64 7.16 -51.93 -0.37 0.27 16 4 C -0.11 -2.35 4.74 -26.73 -0.13 -2.47 16 5 C 0.02 0.56 4.80 -27.88 -0.13 0.43 16 6 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 N -0.68 -11.12 5.41 -99.61 -0.54 -11.66 16 15 C 0.09 1.36 1.76 -67.59 -0.12 1.24 16 16 H 0.07 0.96 7.12 -51.93 -0.37 0.59 16 17 C -0.15 -2.23 5.34 -26.65 -0.14 -2.37 16 18 C 0.06 0.81 5.46 -3.84 -0.02 0.79 16 19 N -0.54 -6.79 4.91 -242.96 -1.19 -7.99 16 20 C 0.03 0.26 9.59 60.07 0.58 0.84 16 21 C 0.06 0.73 4.75 -3.84 -0.02 0.71 16 22 C -0.08 -0.99 2.58 -90.54 -0.23 -1.22 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 24 C -0.13 -1.58 9.07 37.15 0.34 -1.25 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.02 0.43 6.43 -51.92 -0.33 0.09 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.35 6.59 6.19 -39.29 -0.24 6.34 16 34 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 35 H 0.07 1.14 7.49 -51.93 -0.39 0.75 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.77 8.12 -51.92 -0.42 0.35 16 43 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -28.80 344.63 -9.72 -38.52 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.79 Total: 2.36 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -0.11 Total: -17.12 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -1.00 Total: -45.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.80 -9.72 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.848 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds