Wall clock time and date at job start Sun Mar 29 2020 23:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 C 1.52998 * 109.46959 * 239.99679 * 2 1 3 5 5 C 1.52998 * 109.47214 * 174.99940 * 4 2 1 6 6 C 1.50703 * 109.47269 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99969 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99830 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99957 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99773 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47489 * 90.00199 * 10 8 6 12 12 H 1.48504 * 109.46952 * 209.99986 * 10 8 6 13 13 H 1.48505 * 109.47205 * 329.99735 * 10 8 6 14 14 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 15 15 C 1.46906 * 110.99888 * 274.99671 * 14 2 1 16 16 H 1.09004 * 109.52097 * 34.87445 * 15 14 2 17 17 C 1.53120 * 109.52292 * 274.68316 * 15 14 2 18 18 C 1.53037 * 109.27479 * 182.44129 * 17 15 14 19 19 N 1.46842 * 109.52527 * 59.18220 * 18 17 15 20 20 C 1.46901 * 110.99768 * 174.16185 * 19 18 17 21 21 C 1.46846 * 111.19511 * 298.25334 * 19 18 17 22 22 C 1.53035 * 109.52536 * 61.74475 * 21 19 18 23 23 H 1.09002 * 109.50108 * 60.76082 * 22 21 19 24 24 C 1.52993 * 109.53934 * 180.85560 * 22 21 19 25 25 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 27 27 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 28 28 H 1.08997 * 109.47741 * 294.99917 * 4 2 1 29 29 H 1.09007 * 109.47097 * 55.00745 * 4 2 1 30 30 H 1.09002 * 109.47191 * 300.00474 * 5 4 2 31 31 H 1.09007 * 109.46954 * 60.00361 * 5 4 2 32 32 H 0.97010 * 119.99567 * 179.97438 * 9 8 6 33 33 H 1.00902 * 111.00533 * 151.04078 * 14 2 1 34 34 H 1.08995 * 109.50222 * 302.38184 * 17 15 14 35 35 H 1.08993 * 109.50287 * 62.49901 * 17 15 14 36 36 H 1.09001 * 109.46112 * 299.16086 * 18 17 15 37 37 H 1.09006 * 109.45870 * 179.19821 * 18 17 15 38 38 H 1.09005 * 109.46660 * 184.20882 * 20 19 18 39 39 H 1.09005 * 109.47256 * 304.20083 * 20 19 18 40 40 H 1.08996 * 109.47612 * 64.20585 * 20 19 18 41 41 H 1.09000 * 109.46821 * 301.72483 * 21 19 18 42 42 H 1.09009 * 109.46192 * 181.76242 * 21 19 18 43 43 H 1.08999 * 109.47405 * 179.82075 * 24 22 21 44 44 H 1.09002 * 109.47565 * 299.82676 * 24 22 21 45 45 H 1.09008 * 109.47186 * 59.82657 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 1 3.3685 -1.8031 -3.2140 8 6 5.4183 -1.3603 -2.8158 9 7 6.2690 -0.7764 -2.0002 10 14 6.0408 -2.2397 -4.3418 11 1 6.0915 -1.2845 -5.4776 12 1 7.4019 -2.7749 -4.0840 13 1 5.1240 -3.3589 -4.6767 14 7 2.0196 -0.6925 1.1994 15 6 2.0825 0.2226 2.3469 16 1 1.2592 0.9348 2.2903 17 6 3.4151 0.9763 2.3279 18 6 3.5006 1.8825 3.5581 19 7 3.3955 1.0684 4.7757 20 6 3.6119 1.8866 5.9763 21 6 2.1042 0.3722 4.8390 22 6 1.9770 -0.5792 3.6471 23 1 2.7770 -1.3186 3.6847 24 6 0.6227 -1.2890 3.7012 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7516 -1.7716 -1.2056 29 1 1.6053 -0.2617 -2.1370 30 1 3.8531 0.4369 -1.3574 31 1 3.9994 -1.0729 -0.4259 32 1 7.2197 -0.8028 -2.1910 33 1 2.9172 -1.1207 1.0287 34 1 4.2378 0.2615 2.3446 35 1 3.4775 1.5825 1.4243 36 1 2.6856 2.6060 3.5335 37 1 4.4545 2.4100 3.5551 38 1 3.6029 1.2466 6.8586 39 1 4.5754 2.3912 5.9034 40 1 2.8182 2.6292 6.0580 41 1 1.2958 1.1027 4.8085 42 1 2.0438 -0.1974 5.7665 43 1 0.5319 -1.9639 2.8501 44 1 0.5482 -1.8595 4.6270 45 1 -0.1770 -0.5491 3.6650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:15 Heat of formation + Delta-G solvation = -42.546815 kcal Electronic energy + Delta-G solvation = -19991.173536 eV Core-core repulsion = 17234.402785 eV Total energy + Delta-G solvation = -2756.770751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57512 -38.16476 -35.62589 -34.58584 -33.07883 -31.53923 -30.07828 -27.74553 -27.08774 -26.11267 -23.77653 -23.05662 -22.39580 -21.15865 -20.55925 -18.48407 -17.04955 -16.58951 -16.53174 -16.22332 -15.76571 -15.36777 -15.23697 -14.81836 -14.47840 -14.32501 -13.83803 -13.40970 -13.40201 -13.32602 -13.14031 -13.06722 -12.84435 -12.73419 -12.59945 -12.46107 -12.25377 -12.16513 -11.94698 -11.73609 -11.56033 -11.45207 -11.33298 -11.09373 -10.90457 -10.53885 -9.29436 -9.16847 -8.19583 -6.30142 1.39284 1.40274 1.51535 2.40908 2.98307 3.13293 3.27356 3.76357 3.88122 4.05742 4.11847 4.16784 4.33769 4.37986 4.46376 4.50979 4.53211 4.58956 4.65137 4.70608 4.78709 4.81638 4.86661 4.91785 5.01024 5.01405 5.03438 5.07468 5.12011 5.18401 5.24759 5.28889 5.46424 5.48296 5.55126 5.56534 5.73958 5.85508 6.10514 6.17551 6.26303 6.33203 6.49224 6.86593 7.38986 8.91585 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.004996 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.583317 B = 5603.324696 C = 6343.078176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.089 3.911 3 H 0.024 0.976 4 C -0.102 4.102 5 C 0.032 3.968 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 N -0.676 5.676 15 C 0.099 3.901 16 H 0.074 0.926 17 C -0.143 4.143 18 C 0.069 3.931 19 N -0.562 5.562 20 C 0.027 3.973 21 C 0.066 3.934 22 C -0.072 4.072 23 H 0.058 0.942 24 C -0.127 4.127 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.054 0.946 30 H -0.018 1.018 31 H -0.002 1.002 32 H 0.262 0.738 33 H 0.336 0.664 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.038 0.962 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 4.335 14.487 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.021 4.021 3 H 0.042 0.958 4 C -0.139 4.139 5 C -0.006 4.006 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.188 1.188 14 N -0.307 5.307 15 C -0.012 4.012 16 H 0.092 0.908 17 C -0.183 4.183 18 C -0.060 4.060 19 N -0.286 5.286 20 C -0.121 4.121 21 C -0.062 4.062 22 C -0.092 4.092 23 H 0.076 0.924 24 C -0.185 4.185 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.000 1.000 31 H 0.016 0.984 32 H 0.071 0.929 33 H 0.156 0.844 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.639 3.756 14.652 18.492 hybrid contribution 1.176 0.887 -1.189 1.893 sum -9.463 4.643 13.463 17.099 Atomic orbital electron populations 1.21699 0.93217 1.02140 1.01263 1.21498 0.96248 0.94857 0.89516 0.95755 1.21641 0.96158 0.99804 0.96340 1.18957 0.92084 0.94244 0.95283 1.21701 0.92526 1.34602 1.09292 0.92459 1.25929 0.97347 0.96325 0.99956 1.70098 1.02680 1.45448 1.38882 0.85501 0.77607 0.78980 0.79294 1.19871 1.20784 1.18803 1.60793 1.33432 1.32134 1.04345 1.21652 0.95164 0.93021 0.91316 0.90808 1.22244 0.99291 0.99420 0.97321 1.21916 1.00995 0.93930 0.89160 1.61880 1.33394 1.30681 1.02686 1.22384 1.01126 0.96484 0.92118 1.22164 0.88857 0.96326 0.98863 1.21057 0.98916 0.96821 0.92376 0.92369 1.21575 0.94894 1.00172 1.01814 0.92229 0.92373 0.92195 0.92698 0.92703 1.00004 0.98404 0.92902 0.84415 0.93240 0.93278 0.94319 0.90894 0.90270 0.91233 0.95059 0.94390 0.89401 0.92379 0.92123 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.40 71.98 0.68 -2.77 16 2 C 0.09 3.05 2.46 44.91 0.11 3.16 16 3 H 0.02 0.90 7.16 -2.39 -0.02 0.88 16 4 C -0.10 -4.23 4.74 30.59 0.15 -4.09 16 5 C 0.03 1.66 4.80 29.85 0.14 1.80 16 6 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 8 C 0.00 0.13 5.46 84.66 0.46 0.60 16 9 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 10 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 14 N -0.68 -22.56 5.41 -469.06 -2.54 -25.10 16 15 C 0.10 2.84 1.76 44.99 0.08 2.92 16 16 H 0.07 2.04 7.12 -2.39 -0.02 2.02 16 17 C -0.14 -4.51 5.34 30.65 0.16 -4.34 16 18 C 0.07 1.76 5.46 86.33 0.47 2.23 16 19 N -0.56 -13.32 4.91 -922.57 -4.53 -17.85 16 20 C 0.03 0.47 9.59 127.69 1.22 1.70 16 21 C 0.07 1.41 4.75 86.33 0.41 1.82 16 22 C -0.07 -1.81 2.58 -10.74 -0.03 -1.83 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 C -0.13 -2.75 9.07 71.98 0.65 -2.10 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.42 7.43 -2.39 -0.02 1.41 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 30 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 31 H 0.00 -0.13 6.43 -2.38 -0.02 -0.14 16 32 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 33 H 0.34 13.24 6.19 -89.69 -0.55 12.69 16 34 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.05 1.71 7.49 -2.39 -0.02 1.69 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.84 8.09 -2.38 -0.02 1.82 16 38 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.07 1.20 8.09 -2.38 -0.02 1.18 16 40 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 1.62 8.12 -2.38 -0.02 1.61 16 43 H 0.06 1.46 7.68 -2.39 -0.02 1.44 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -62.55 344.63 0.35 -62.21 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.36 Total: 22.69 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 4.74 Total: -32.00 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -6.78 Total: -99.80 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -62.55 0.35 -62.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.661 kcal (2) G-P(sol) polarization free energy of solvation -62.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds