Wall clock time and date at job start Sun Mar 29 2020 23:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47426 * 2 1 4 4 C 1.53003 * 109.47212 * 119.99984 * 2 1 3 5 5 C 1.53002 * 109.47222 * 183.14488 * 4 2 1 6 6 C 1.50698 * 109.46794 * 175.93506 * 5 4 2 7 7 H 1.07997 * 120.00207 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99457 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00020 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00462 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47143 * 89.99719 * 10 8 6 12 12 H 1.48494 * 109.47489 * 209.99635 * 10 8 6 13 13 H 1.48498 * 109.46894 * 330.00072 * 10 8 6 14 14 N 1.46901 * 109.46877 * 240.00129 * 2 1 3 15 15 C 1.46846 * 111.00179 * 69.89270 * 14 2 1 16 16 C 1.53031 * 109.52505 * 174.15636 * 15 14 2 17 17 C 1.53126 * 109.27653 * 59.18097 * 16 15 14 18 18 C 1.53115 * 109.15718 * 302.34367 * 17 16 15 19 19 H 1.09004 * 109.50512 * 297.67534 * 18 17 16 20 20 N 1.46902 * 109.50036 * 177.59844 * 18 17 16 21 21 C 1.46894 * 111.00538 * 59.99971 * 20 18 17 22 22 C 1.46901 * 110.99942 * 183.95693 * 20 18 17 23 23 C 1.46847 * 111.00141 * 305.67902 * 14 2 1 24 24 H 1.08994 * 109.47049 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47134 * 299.99877 * 1 2 3 26 26 H 1.08996 * 109.47024 * 59.99777 * 1 2 3 27 27 H 1.08991 * 109.47160 * 303.14810 * 4 2 1 28 28 H 1.09004 * 109.46970 * 63.14837 * 4 2 1 29 29 H 1.09000 * 109.47117 * 295.93529 * 5 4 2 30 30 H 1.09000 * 109.46441 * 55.93579 * 5 4 2 31 31 H 0.96997 * 120.00282 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.46038 * 54.13804 * 15 14 2 33 33 H 1.08999 * 109.45085 * 294.17034 * 15 14 2 34 34 H 1.09003 * 109.50846 * 299.24250 * 16 15 14 35 35 H 1.09004 * 109.53804 * 179.14004 * 16 15 14 36 36 H 1.09000 * 109.51885 * 182.44207 * 17 16 15 37 37 H 1.08993 * 109.52337 * 62.25119 * 17 16 15 38 38 H 1.08995 * 109.47345 * 179.97438 * 21 20 18 39 39 H 1.09006 * 109.47176 * 300.00604 * 21 20 18 40 40 H 1.09000 * 109.47005 * 59.99891 * 21 20 18 41 41 H 1.09004 * 109.47329 * 296.04157 * 22 20 18 42 42 H 1.08997 * 109.47454 * 56.03913 * 22 20 18 43 43 H 1.09001 * 109.47685 * 176.04461 * 22 20 18 44 44 H 1.09000 * 109.46223 * 65.82588 * 23 14 2 45 45 H 1.09003 * 109.46007 * 305.85639 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5680 -0.6531 1.2895 6 6 4.0650 -1.2755 2.5687 7 1 3.3616 -1.6796 3.2816 8 6 5.4180 -1.3299 2.8286 9 7 5.8519 -1.8726 3.9452 10 14 6.6349 -0.6315 1.5953 11 1 6.8855 0.7995 1.9032 12 1 7.9111 -1.3862 1.6773 13 1 6.0753 -0.7524 0.2251 14 7 2.0196 -0.6925 -1.1995 15 6 1.7507 0.0958 -2.4089 16 6 2.4001 -0.5831 -3.6168 17 6 1.8307 -1.9964 -3.7691 18 6 2.0814 -2.7808 -2.4782 19 1 3.1545 -2.8723 -2.3104 20 7 1.4874 -4.1194 -2.5946 21 6 2.0762 -4.8609 -3.7177 22 6 1.6268 -4.8682 -1.3385 23 6 1.4412 -2.0382 -1.3032 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6314 -0.2411 2.1383 28 1 1.7235 -1.7640 1.2215 29 1 3.9784 -1.1958 0.4379 30 1 3.8864 0.3884 1.2443 31 1 6.8037 -1.9105 4.1282 32 1 2.1643 1.0972 -2.2891 33 1 0.6742 0.1639 -2.5658 34 1 3.4783 -0.6395 -3.4666 35 1 2.1878 -0.0063 -4.5170 36 1 2.3220 -2.4992 -4.6021 37 1 0.7589 -1.9389 -3.9581 38 1 1.6190 -5.8482 -3.7808 39 1 1.8976 -4.3173 -4.6455 40 1 3.1495 -4.9673 -3.5599 41 1 2.6837 -5.0359 -1.1308 42 1 1.1827 -4.2968 -0.5236 43 1 1.1178 -5.8278 -1.4291 44 1 0.3661 -1.9599 -1.4654 45 1 1.6301 -2.5868 -0.3804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:04 Heat of formation + Delta-G solvation = -22.366821 kcal Electronic energy + Delta-G solvation = -20490.675812 eV Core-core repulsion = 17734.780131 eV Total energy + Delta-G solvation = -2755.895681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84707 -38.24714 -35.98593 -34.72948 -32.53513 -31.03691 -30.39172 -28.59524 -27.21832 -25.28017 -24.97666 -22.90681 -22.15316 -21.08568 -20.15247 -18.81827 -17.61142 -16.50768 -16.32628 -15.85931 -15.68893 -15.50623 -15.37881 -14.96753 -14.67489 -14.46637 -14.43192 -13.79021 -13.58844 -13.52038 -13.24160 -13.18909 -12.85597 -12.82737 -12.42979 -12.32013 -12.31684 -11.99225 -11.74649 -11.63067 -11.57016 -11.37378 -11.32208 -11.20724 -10.87374 -10.73393 -9.36062 -9.02913 -8.28147 -6.29975 1.33597 1.35896 1.50768 2.37322 2.74179 3.08170 3.26105 3.76270 3.91311 4.01960 4.10754 4.25791 4.29040 4.32609 4.40916 4.43398 4.46900 4.59171 4.62412 4.69638 4.71493 4.75257 4.81335 4.89388 4.94809 4.97161 4.98048 4.98667 5.07978 5.10216 5.13694 5.22836 5.24783 5.34474 5.46912 5.57266 5.69142 5.74253 5.97279 6.09934 6.30065 6.33602 6.39042 6.78532 7.34488 8.88901 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.006762 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.399539 B = 4139.566406 C = 4568.166622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 H 0.081 0.919 4 C -0.088 4.088 5 C 0.007 3.993 6 C -0.528 4.528 7 H 0.029 0.971 8 C 0.004 3.996 9 N -0.954 5.954 10 Si 0.948 3.052 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.250 1.250 14 N -0.545 5.545 15 C 0.053 3.947 16 C -0.112 4.112 17 C -0.103 4.103 18 C 0.087 3.913 19 H 0.021 0.979 20 N -0.546 5.546 21 C 0.022 3.978 22 C 0.019 3.981 23 C 0.067 3.933 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.020 0.980 30 H 0.008 0.992 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.017 0.983 41 H 0.013 0.987 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 0.549 -19.418 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 H 0.099 0.901 4 C -0.126 4.126 5 C -0.031 4.031 6 C -0.566 4.566 7 H 0.047 0.953 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.772 3.228 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.174 1.174 14 N -0.270 5.270 15 C -0.075 4.075 16 C -0.151 4.151 17 C -0.141 4.141 18 C -0.022 4.022 19 H 0.039 0.961 20 N -0.270 5.270 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.061 4.061 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.713 0.513 -19.381 22.150 hybrid contribution 0.971 -0.122 0.620 1.158 sum -9.742 0.392 -18.760 21.143 Atomic orbital electron populations 1.22352 0.96113 1.02077 1.02681 1.21704 0.93351 0.97664 0.89403 0.90123 1.21415 0.96157 0.99049 0.95936 1.19299 0.94219 0.95297 0.94250 1.21635 0.92311 1.37953 1.04731 0.95298 1.25970 1.00694 0.95390 0.97156 1.70078 1.15125 1.47505 1.26862 0.85676 0.77680 0.78755 0.80671 1.19140 1.21179 1.17357 1.61952 1.59706 1.02580 1.02775 1.22169 0.98856 0.97037 0.89390 1.21576 1.00085 0.95680 0.97721 1.21597 1.01815 0.95067 0.95596 1.21628 0.95362 0.88873 0.96340 0.96098 1.62088 1.57284 1.02593 1.05013 1.22482 0.96699 0.99203 0.94157 1.22456 0.99275 0.99188 0.91984 1.22024 0.96706 0.89688 0.97646 0.92799 0.91621 0.91391 0.93086 0.93843 0.96172 0.97367 0.92692 0.90597 0.93785 0.92735 0.88861 0.90801 0.90867 0.90154 0.89856 0.96466 0.96823 0.91868 0.89669 0.93519 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 8.45 71.98 0.61 -3.74 16 2 C 0.09 2.72 2.33 44.92 0.10 2.82 16 3 H 0.08 2.48 7.99 -2.39 -0.02 2.46 16 4 C -0.09 -3.54 4.52 30.60 0.14 -3.40 16 5 C 0.01 0.33 3.86 29.85 0.12 0.45 16 6 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 7 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 8 C 0.00 0.24 5.47 84.65 0.46 0.70 16 9 N -0.95 -61.92 13.96 21.45 0.30 -61.62 16 10 Si 0.95 46.80 27.47 68.60 1.88 48.68 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.25 -11.80 6.54 99.48 0.65 -11.15 16 14 N -0.55 -16.59 4.05 -871.12 -3.53 -20.12 16 15 C 0.05 1.24 5.13 86.32 0.44 1.68 16 16 C -0.11 -2.33 6.09 30.65 0.19 -2.14 16 17 C -0.10 -2.16 4.97 30.67 0.15 -2.01 16 18 C 0.09 2.35 2.10 44.96 0.09 2.44 16 19 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 20 N -0.55 -13.46 4.89 -922.98 -4.51 -17.97 16 21 C 0.02 0.44 9.21 127.69 1.18 1.62 16 22 C 0.02 0.50 9.23 127.69 1.18 1.68 16 23 C 0.07 1.99 3.45 86.32 0.30 2.29 16 24 H 0.05 1.39 6.46 -2.39 -0.02 1.37 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.45 6.81 -2.39 -0.02 1.43 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.04 1.80 6.29 -2.38 -0.01 1.79 16 29 H 0.02 1.02 6.87 -2.39 -0.02 1.00 16 30 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 31 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 32 H 0.08 1.72 8.02 -2.38 -0.02 1.70 16 33 H 0.04 0.93 6.87 -2.39 -0.02 0.91 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.36 6.55 -2.39 -0.02 1.34 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.39 6.36 -2.38 -0.02 1.38 16 40 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.06 1.77 6.04 -2.39 -0.01 1.75 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.30 6.58 -2.39 -0.02 1.28 16 45 H 0.06 2.02 4.32 -2.39 -0.01 2.00 16 Total: -1.00 -68.31 330.04 0.22 -68.09 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.87 Total: 12.10 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 5.21 Total: -29.16 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -7.74 Total: -99.72 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.88 Total: 48.68 kcal Total: -68.31 0.22 -68.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.726 kcal (2) G-P(sol) polarization free energy of solvation -68.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds