Wall clock time and date at job start Sun Mar 29 2020 23:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46868 * 2 1 4 4 C 1.46900 * 111.00035 * 297.61331 * 3 2 1 5 5 C 1.50696 * 109.47056 * 292.84105 * 4 3 2 6 6 H 1.07998 * 120.00023 * 354.98197 * 5 4 3 7 7 C 1.37879 * 120.00203 * 174.98752 * 5 4 3 8 8 N 1.31517 * 119.99791 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00099 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47164 * 90.00010 * 9 7 5 11 11 H 1.48500 * 109.46848 * 209.99737 * 9 7 5 12 12 H 1.48498 * 109.47201 * 329.99500 * 9 7 5 13 13 C 1.46902 * 110.99912 * 61.56457 * 3 2 1 14 14 C 1.52996 * 109.47029 * 66.04823 * 13 3 2 15 15 C 1.53006 * 109.47298 * 179.97438 * 14 13 3 16 16 C 1.53122 * 109.52105 * 184.99924 * 15 14 13 17 17 C 1.53037 * 109.27290 * 182.44126 * 16 15 14 18 18 N 1.46844 * 109.52608 * 59.17759 * 17 16 15 19 19 C 1.46893 * 111.00052 * 174.15654 * 18 17 16 20 20 C 1.46845 * 111.19791 * 298.25693 * 18 17 16 21 21 C 1.53037 * 109.52399 * 61.74142 * 20 18 17 22 22 H 1.08998 * 109.46964 * 59.54994 * 1 2 3 23 23 H 1.09000 * 109.46958 * 179.54706 * 1 2 3 24 24 H 1.09004 * 109.47111 * 299.54981 * 1 2 3 25 25 H 1.08992 * 109.47153 * 240.00066 * 2 1 3 26 26 H 1.09001 * 109.46759 * 119.99654 * 2 1 3 27 27 H 1.08998 * 109.46993 * 52.83798 * 4 3 2 28 28 H 1.09000 * 109.47025 * 172.83830 * 4 3 2 29 29 H 0.96998 * 119.99906 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47519 * 306.04348 * 13 3 2 31 31 H 1.09009 * 109.46852 * 186.04540 * 13 3 2 32 32 H 1.09001 * 109.47246 * 59.99952 * 14 13 3 33 33 H 1.08998 * 109.47380 * 299.99981 * 14 13 3 34 34 H 1.09002 * 109.57051 * 305.15839 * 15 14 13 35 35 H 1.09002 * 109.50428 * 62.49975 * 16 15 14 36 36 H 1.08999 * 109.53584 * 302.40136 * 16 15 14 37 37 H 1.08999 * 109.46107 * 299.15959 * 17 16 15 38 38 H 1.09002 * 109.46000 * 179.19902 * 17 16 15 39 39 H 1.09006 * 109.47148 * 60.00371 * 19 18 17 40 40 H 1.09003 * 109.47678 * 300.00355 * 19 18 17 41 41 H 1.09005 * 109.47463 * 180.02562 * 19 18 17 42 42 H 1.09006 * 109.45775 * 181.75828 * 20 18 17 43 43 H 1.08992 * 109.46279 * 301.72322 * 20 18 17 44 44 H 1.09000 * 109.50182 * 180.87660 * 21 20 18 45 45 H 1.08999 * 109.53722 * 60.77825 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5958 2.0932 -1.2152 5 6 2.2868 1.4938 -2.4128 6 1 3.0323 0.7243 -2.2769 7 6 1.9672 1.9277 -3.6819 8 7 1.0590 2.8644 -3.8473 9 14 2.8243 1.1851 -5.1663 10 1 2.0556 0.0079 -5.6442 11 1 2.9036 2.1975 -6.2498 12 1 4.1950 0.7598 -4.7850 13 6 1.5794 2.0990 1.2060 14 6 2.2431 1.4784 2.4369 15 6 1.7851 2.2224 3.6930 16 6 2.5422 1.6850 4.9106 17 6 2.0365 2.3899 6.1713 18 7 0.5958 2.1501 6.3233 19 6 0.1026 2.6952 7.5951 20 6 -0.1566 2.6995 5.1882 21 6 0.2835 2.0039 3.8981 22 1 -0.3633 0.5208 -0.8859 23 1 -0.3633 -1.0276 -0.0081 24 1 -0.3633 0.5068 0.8940 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5164 1.9982 -1.3333 28 1 1.8609 3.1473 -1.1326 29 1 0.8340 3.1695 -4.7402 30 1 0.4962 2.0213 1.2992 31 1 1.8632 3.1488 1.1306 32 1 3.3263 1.5561 2.3437 33 1 1.9594 0.4287 2.5122 34 1 1.9861 3.2877 3.5800 35 1 3.6085 1.8762 4.7896 36 1 2.3728 0.6120 5.0008 37 1 2.2195 3.4611 6.0866 38 1 2.5636 1.9994 7.0419 39 1 0.2830 3.7698 7.6242 40 1 0.6258 2.2165 8.4229 41 1 -0.9669 2.5035 7.6823 42 1 -1.2226 2.5338 5.3448 43 1 0.0366 3.7692 5.1082 44 1 -0.2639 2.4228 3.0538 45 1 0.0779 0.9360 3.9714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207485228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:06 Heat of formation + Delta-G solvation = -12.064910 kcal Electronic energy + Delta-G solvation = -19648.317070 eV Core-core repulsion = 16892.868114 eV Total energy + Delta-G solvation = -2755.448956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31282 -37.36868 -34.64089 -32.53833 -30.95166 -30.16655 -29.06400 -26.85787 -25.17632 -23.72181 -23.09752 -22.66946 -20.96477 -19.63683 -18.90093 -16.15652 -15.98289 -15.35599 -15.15708 -14.86395 -14.72821 -14.34348 -14.07491 -13.74900 -13.08667 -12.94059 -12.75424 -12.49602 -12.19434 -12.03483 -11.86028 -11.71220 -11.36079 -11.22417 -11.18699 -10.92037 -10.79234 -10.61018 -10.53740 -10.28808 -10.20117 -10.10352 -9.88861 -9.52777 -9.10154 -8.48947 -8.38753 -7.06622 -5.98233 -3.98845 3.34015 3.40163 3.44852 3.79094 4.45728 4.71211 4.76861 4.81920 5.01135 5.12869 5.22753 5.27647 5.36942 5.40117 5.42724 5.49172 5.62399 5.65204 5.70683 5.72085 5.84321 5.88209 5.97609 6.04285 6.07817 6.12937 6.14616 6.27142 6.29240 6.40853 6.51945 6.67760 6.69771 6.78743 6.92671 6.94374 6.99382 7.39382 7.51433 7.87708 8.18508 8.29744 8.64775 9.09894 9.65143 11.12441 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.046414 B = 0.003761 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.122845 B = 7442.878582 C = 7504.415559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 N -0.537 5.537 4 C 0.188 3.812 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.051 3.949 14 C -0.107 4.107 15 C -0.087 4.087 16 C -0.111 4.111 17 C 0.056 3.944 18 N -0.544 5.544 19 C 0.025 3.975 20 C 0.055 3.945 21 C -0.113 4.113 22 H 0.066 0.934 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.052 0.948 27 H 0.002 0.998 28 H 0.022 0.978 29 H 0.260 0.740 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.022 0.978 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.031 0.969 44 H 0.070 0.930 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -1.263 19.639 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.068 4.068 3 N -0.260 5.260 4 C 0.063 3.937 5 C -0.541 4.541 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.077 4.077 14 C -0.145 4.145 15 C -0.106 4.106 16 C -0.148 4.148 17 C -0.072 4.072 18 N -0.269 5.269 19 C -0.123 4.123 20 C -0.072 4.072 21 C -0.150 4.150 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.020 0.980 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.039 -1.661 19.495 19.594 hybrid contribution -0.462 0.676 -0.901 1.218 sum -1.501 -0.985 18.594 18.681 Atomic orbital electron populations 1.22383 0.99638 1.00804 1.01911 1.21961 0.91950 0.91740 1.01117 1.62321 1.59219 1.01862 1.02632 1.19765 0.94692 0.93614 0.85625 1.21179 1.21628 1.21170 0.90170 0.91970 1.24989 0.95376 0.95302 0.99033 1.69961 1.32306 1.29404 1.22377 0.86533 0.80060 0.78730 0.82314 1.20801 1.21343 1.19790 1.22109 0.96898 0.97945 0.90766 1.21605 1.00892 0.99310 0.92660 1.21193 0.94770 0.99962 0.94695 1.21635 0.99166 1.00824 0.93215 1.22105 0.88019 0.98237 0.98821 1.61931 1.03740 1.59039 1.02188 1.22344 1.00923 0.97240 0.91830 1.22127 0.97765 0.96448 0.90896 1.21692 0.96077 1.01433 0.95823 0.91467 0.93619 0.93615 0.90414 0.92928 0.98046 0.95975 0.93041 0.95344 0.92097 0.91536 0.92119 0.91686 0.91478 0.91139 0.95092 0.91082 0.95901 0.91534 0.91506 0.91028 0.95055 0.91122 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 9.26 37.16 0.34 -3.12 16 2 C 0.06 1.19 5.67 -3.82 -0.02 1.17 16 3 N -0.54 -11.63 4.69 -236.07 -1.11 -12.74 16 4 C 0.19 4.93 4.53 -4.98 -0.02 4.90 16 5 C -0.50 -14.24 8.39 -34.44 -0.29 -14.53 16 6 H 0.06 1.75 7.38 -52.49 -0.39 1.37 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.05 0.92 4.50 -3.82 -0.02 0.90 16 14 C -0.11 -1.56 4.61 -26.73 -0.12 -1.68 16 15 C -0.09 -1.07 2.25 -90.50 -0.20 -1.27 16 16 C -0.11 -1.20 5.38 -26.65 -0.14 -1.34 16 17 C 0.06 0.56 5.46 -3.84 -0.02 0.54 16 18 N -0.54 -5.76 4.91 -242.96 -1.19 -6.95 16 19 C 0.02 0.21 9.59 60.06 0.58 0.79 16 20 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 21 C -0.11 -1.34 5.08 -26.65 -0.14 -1.48 16 22 H 0.07 1.43 6.29 -51.93 -0.33 1.11 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.77 6.33 -51.93 -0.33 0.44 16 25 H 0.08 1.67 6.98 -51.93 -0.36 1.31 16 26 H 0.05 0.91 6.40 -51.93 -0.33 0.58 16 27 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 28 H 0.02 0.62 7.91 -51.93 -0.41 0.21 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.03 0.51 4.55 -51.93 -0.24 0.27 16 31 H 0.06 1.13 7.92 -51.92 -0.41 0.72 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.89 6.52 -51.93 -0.34 0.55 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.89 6.71 -51.93 -0.35 0.54 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -29.58 336.44 -10.11 -39.69 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -8.42 Total: -2.59 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.18 Total: -13.09 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -1.56 Total: -45.91 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.58 -10.11 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207485228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.622 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds