Wall clock time and date at job start Sun Mar 29 2020 23:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46868 * 2 1 4 4 C 1.46900 * 111.00035 * 297.61331 * 3 2 1 5 5 C 1.50696 * 109.47056 * 292.84105 * 4 3 2 6 6 H 1.07998 * 120.00023 * 354.98197 * 5 4 3 7 7 C 1.37879 * 120.00203 * 174.98752 * 5 4 3 8 8 N 1.31517 * 119.99791 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00099 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47164 * 90.00010 * 9 7 5 11 11 H 1.48500 * 109.46848 * 209.99737 * 9 7 5 12 12 H 1.48498 * 109.47201 * 329.99500 * 9 7 5 13 13 C 1.46902 * 110.99912 * 61.56457 * 3 2 1 14 14 C 1.52996 * 109.47029 * 66.04823 * 13 3 2 15 15 C 1.53006 * 109.47298 * 179.97438 * 14 13 3 16 16 C 1.53122 * 109.52105 * 184.99924 * 15 14 13 17 17 C 1.53037 * 109.27290 * 182.44126 * 16 15 14 18 18 N 1.46844 * 109.52608 * 59.17759 * 17 16 15 19 19 C 1.46893 * 111.00052 * 174.15654 * 18 17 16 20 20 C 1.46845 * 111.19791 * 298.25693 * 18 17 16 21 21 C 1.53037 * 109.52399 * 61.74142 * 20 18 17 22 22 H 1.08998 * 109.46964 * 59.54994 * 1 2 3 23 23 H 1.09000 * 109.46958 * 179.54706 * 1 2 3 24 24 H 1.09004 * 109.47111 * 299.54981 * 1 2 3 25 25 H 1.08992 * 109.47153 * 240.00066 * 2 1 3 26 26 H 1.09001 * 109.46759 * 119.99654 * 2 1 3 27 27 H 1.08998 * 109.46993 * 52.83798 * 4 3 2 28 28 H 1.09000 * 109.47025 * 172.83830 * 4 3 2 29 29 H 0.96998 * 119.99906 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47519 * 306.04348 * 13 3 2 31 31 H 1.09009 * 109.46852 * 186.04540 * 13 3 2 32 32 H 1.09001 * 109.47246 * 59.99952 * 14 13 3 33 33 H 1.08998 * 109.47380 * 299.99981 * 14 13 3 34 34 H 1.09002 * 109.57051 * 305.15839 * 15 14 13 35 35 H 1.09002 * 109.50428 * 62.49975 * 16 15 14 36 36 H 1.08999 * 109.53584 * 302.40136 * 16 15 14 37 37 H 1.08999 * 109.46107 * 299.15959 * 17 16 15 38 38 H 1.09002 * 109.46000 * 179.19902 * 17 16 15 39 39 H 1.09006 * 109.47148 * 60.00371 * 19 18 17 40 40 H 1.09003 * 109.47678 * 300.00355 * 19 18 17 41 41 H 1.09005 * 109.47463 * 180.02562 * 19 18 17 42 42 H 1.09006 * 109.45775 * 181.75828 * 20 18 17 43 43 H 1.08992 * 109.46279 * 301.72322 * 20 18 17 44 44 H 1.09000 * 109.50182 * 180.87660 * 21 20 18 45 45 H 1.08999 * 109.53722 * 60.77825 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5958 2.0932 -1.2152 5 6 2.2868 1.4938 -2.4128 6 1 3.0323 0.7243 -2.2769 7 6 1.9672 1.9277 -3.6819 8 7 1.0590 2.8644 -3.8473 9 14 2.8243 1.1851 -5.1663 10 1 2.0556 0.0079 -5.6442 11 1 2.9036 2.1975 -6.2498 12 1 4.1950 0.7598 -4.7850 13 6 1.5794 2.0990 1.2060 14 6 2.2431 1.4784 2.4369 15 6 1.7851 2.2224 3.6930 16 6 2.5422 1.6850 4.9106 17 6 2.0365 2.3899 6.1713 18 7 0.5958 2.1501 6.3233 19 6 0.1026 2.6952 7.5951 20 6 -0.1566 2.6995 5.1882 21 6 0.2835 2.0039 3.8981 22 1 -0.3633 0.5208 -0.8859 23 1 -0.3633 -1.0276 -0.0081 24 1 -0.3633 0.5068 0.8940 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 0.5164 1.9982 -1.3333 28 1 1.8609 3.1473 -1.1326 29 1 0.8340 3.1695 -4.7402 30 1 0.4962 2.0213 1.2992 31 1 1.8632 3.1488 1.1306 32 1 3.3263 1.5561 2.3437 33 1 1.9594 0.4287 2.5122 34 1 1.9861 3.2877 3.5800 35 1 3.6085 1.8762 4.7896 36 1 2.3728 0.6120 5.0008 37 1 2.2195 3.4611 6.0866 38 1 2.5636 1.9994 7.0419 39 1 0.2830 3.7698 7.6242 40 1 0.6258 2.2165 8.4229 41 1 -0.9669 2.5035 7.6823 42 1 -1.2226 2.5338 5.3448 43 1 0.0366 3.7692 5.1082 44 1 -0.2639 2.4228 3.0538 45 1 0.0779 0.9360 3.9714 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207485228.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:06 Heat of formation + Delta-G solvation = -30.965887 kcal Electronic energy + Delta-G solvation = -19649.136678 eV Core-core repulsion = 16892.868114 eV Total energy + Delta-G solvation = -2756.268564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28291 -38.90398 -35.77626 -34.61410 -31.83166 -31.43709 -30.76587 -28.39886 -26.47290 -25.18173 -24.41151 -23.82491 -22.21942 -20.59022 -20.48919 -18.34983 -17.02869 -16.86198 -16.51214 -16.02991 -15.98842 -15.53119 -15.36358 -14.94881 -14.49387 -14.40896 -13.98037 -13.65202 -13.37062 -13.28656 -13.12257 -13.08499 -12.89437 -12.62801 -12.60465 -12.41819 -12.22259 -12.09411 -12.04040 -11.81607 -11.53708 -11.39327 -11.27191 -11.02239 -10.90636 -10.58443 -9.26944 -8.85009 -8.17905 -6.27556 1.40739 1.42054 1.53767 2.41365 3.03275 3.14177 3.36654 3.85063 3.88391 3.93660 4.19452 4.23882 4.34846 4.36549 4.50205 4.51078 4.57104 4.59557 4.64071 4.67381 4.73456 4.76225 4.82726 4.89011 4.93646 4.99588 5.02282 5.07985 5.12368 5.20446 5.24239 5.26158 5.27641 5.40626 5.43065 5.53746 5.59068 5.70737 6.11543 6.14442 6.17639 6.42895 6.74100 6.90289 7.42017 8.92615 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.046414 B = 0.003761 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.122845 B = 7442.878582 C = 7504.415559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 N -0.546 5.546 4 C 0.204 3.796 5 C -0.519 4.519 6 H 0.060 0.940 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.054 3.946 14 C -0.093 4.093 15 C -0.082 4.082 16 C -0.106 4.106 17 C 0.057 3.943 18 N -0.556 5.556 19 C 0.024 3.976 20 C 0.058 3.942 21 C -0.110 4.110 22 H 0.029 0.971 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.084 0.916 27 H -0.021 1.021 28 H -0.008 1.008 29 H 0.263 0.737 30 H 0.031 0.969 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.028 0.972 44 H 0.059 0.941 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -2.470 20.973 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.067 4.067 3 N -0.270 5.270 4 C 0.077 3.923 5 C -0.557 4.557 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.074 4.074 14 C -0.131 4.131 15 C -0.101 4.101 16 C -0.144 4.144 17 C -0.071 4.071 18 N -0.281 5.281 19 C -0.123 4.123 20 C -0.070 4.070 21 C -0.147 4.147 22 H 0.048 0.952 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.102 0.898 27 H -0.004 1.004 28 H 0.010 0.990 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.043 0.957 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.535 -2.878 20.858 21.062 hybrid contribution -0.641 1.066 -1.256 1.768 sum -1.175 -1.811 19.602 19.720 Atomic orbital electron populations 1.22263 0.98629 1.02105 1.00711 1.21997 0.92790 0.90359 1.01562 1.62241 1.59703 1.02844 1.02173 1.19401 0.93033 0.92296 0.87531 1.21469 1.21742 1.21210 0.91301 0.92183 1.25898 0.95986 0.95605 1.02227 1.70090 1.33658 1.30678 1.23252 0.85418 0.79121 0.78049 0.78257 1.19807 1.20824 1.18956 1.22164 0.97414 0.97236 0.90625 1.21481 1.00209 0.99510 0.91877 1.21125 0.95338 0.99331 0.94283 1.21587 0.99386 1.00667 0.92723 1.22114 0.88004 0.98085 0.98885 1.61953 1.03942 1.59405 1.02766 1.22397 1.01455 0.97401 0.91091 1.22073 0.98310 0.96051 0.90546 1.21635 0.95584 1.01286 0.96241 0.95196 0.90983 0.92218 0.92565 0.89754 1.00376 0.99041 0.92812 0.95070 0.93464 0.91951 0.91555 0.92260 0.90723 0.91273 0.95276 0.89625 0.95711 0.90441 0.90883 0.90246 0.95375 0.92221 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.45 9.26 71.98 0.67 -5.78 16 2 C 0.06 2.35 5.67 86.30 0.49 2.84 16 3 N -0.55 -23.97 4.69 -900.80 -4.23 -28.20 16 4 C 0.20 11.09 4.53 85.56 0.39 11.48 16 5 C -0.52 -30.01 8.39 25.60 0.21 -29.80 16 6 H 0.06 3.43 7.38 -2.91 -0.02 3.40 16 7 C 0.00 0.02 5.46 84.65 0.46 0.49 16 8 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 9 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 C 0.05 1.93 4.50 86.30 0.39 2.32 16 14 C -0.09 -2.60 4.61 30.60 0.14 -2.46 16 15 C -0.08 -1.90 2.25 -10.71 -0.02 -1.92 16 16 C -0.11 -2.07 5.38 30.65 0.16 -1.90 16 17 C 0.06 1.02 5.46 86.33 0.47 1.49 16 18 N -0.56 -10.55 4.91 -922.60 -4.53 -15.08 16 19 C 0.02 0.36 9.59 127.69 1.22 1.58 16 20 C 0.06 1.16 5.46 86.33 0.47 1.63 16 21 C -0.11 -2.48 5.08 30.64 0.16 -2.32 16 22 H 0.03 1.29 6.29 -2.39 -0.02 1.28 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.06 1.96 6.33 -2.39 -0.02 1.95 16 25 H 0.06 2.41 6.98 -2.39 -0.02 2.39 16 26 H 0.08 2.73 6.40 -2.39 -0.02 2.72 16 27 H -0.02 -1.25 6.02 -2.39 -0.01 -1.26 16 28 H -0.01 -0.50 7.91 -2.39 -0.02 -0.52 16 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.03 1.11 4.55 -2.39 -0.01 1.10 16 31 H 0.05 1.81 7.92 -2.38 -0.02 1.79 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.79 6.52 -2.39 -0.02 1.78 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 39 H 0.02 0.35 8.14 -2.38 -0.02 0.33 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.97 8.09 -2.38 -0.02 0.95 16 42 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 43 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 1.46 6.71 -2.39 -0.02 1.45 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -64.07 336.44 -0.31 -64.38 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.92 Total: 11.19 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 5.21 Total: -22.36 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -8.47 Total: -100.27 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.07 -0.31 -64.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207485228.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.416 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds