Wall clock time and date at job start Sun Mar 29 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47414 * 239.99679 * 2 1 3 5 5 C 1.53002 * 109.46953 * 175.00121 * 4 2 1 6 6 C 1.50696 * 109.47060 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99783 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00307 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99720 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00212 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47101 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47016 * 119.99740 * 10 8 6 13 13 H 1.48501 * 109.46758 * 240.00070 * 10 8 6 14 14 N 1.46906 * 109.46839 * 119.99889 * 2 1 3 15 15 C 1.46902 * 110.99573 * 275.00202 * 14 2 1 16 16 C 1.53008 * 109.46622 * 179.97438 * 15 14 2 17 17 H 1.08991 * 109.50406 * 54.99872 * 16 15 14 18 18 C 1.53118 * 109.50468 * 294.91919 * 16 15 14 19 19 C 1.53120 * 109.16142 * 182.44576 * 18 16 15 20 20 C 1.53041 * 109.30852 * 57.59206 * 19 18 16 21 21 N 1.46843 * 109.52763 * 300.84731 * 20 19 18 22 22 C 1.46845 * 111.19799 * 61.73739 * 21 20 19 23 23 H 1.09002 * 109.46355 * 178.24606 * 22 21 20 24 24 C 1.53005 * 109.46089 * 58.27817 * 22 21 20 25 25 H 1.09002 * 109.46966 * 60.00739 * 1 2 3 26 26 H 1.09008 * 109.46883 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47627 * 300.00395 * 1 2 3 28 28 H 1.09002 * 109.47133 * 295.00220 * 4 2 1 29 29 H 1.08998 * 109.47172 * 55.00025 * 4 2 1 30 30 H 1.09002 * 109.47282 * 300.00007 * 5 4 2 31 31 H 1.08997 * 109.46989 * 60.00434 * 5 4 2 32 32 H 0.97000 * 120.00317 * 180.02562 * 9 8 6 33 33 H 1.00896 * 111.00309 * 151.04614 * 14 2 1 34 34 H 1.08990 * 109.47358 * 299.99539 * 15 14 2 35 35 H 1.09004 * 109.47457 * 60.00221 * 15 14 2 36 36 H 1.09003 * 109.52677 * 302.31417 * 18 16 15 37 37 H 1.09005 * 109.52241 * 62.49961 * 18 16 15 38 38 H 1.08998 * 109.46929 * 297.66000 * 19 18 16 39 39 H 1.08998 * 109.50594 * 177.55994 * 19 18 16 40 40 H 1.09003 * 109.46139 * 180.82161 * 20 19 18 41 41 H 1.09006 * 109.45910 * 60.86064 * 20 19 18 42 42 H 1.00903 * 111.00020 * 185.83789 * 21 20 19 43 43 H 1.08997 * 109.47148 * 299.94494 * 24 22 21 44 44 H 1.08997 * 109.46982 * 59.94781 * 24 22 21 45 45 H 1.09004 * 109.46931 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0674 -1.3243 -2.5435 7 1 3.3690 -1.8054 -3.2123 8 6 5.4188 -1.3615 -2.8147 9 7 6.2692 -0.7760 -2.0001 10 14 6.0415 -2.2422 -4.3398 11 1 4.8916 -2.8136 -5.0857 12 1 6.7650 -1.2782 -5.2073 13 1 6.9630 -3.3353 -3.9384 14 7 2.0196 -0.6925 1.1995 15 6 2.0823 0.2227 2.3469 16 6 2.5948 -0.5331 3.5746 17 1 3.5504 -1.0022 3.3404 18 6 1.5810 -1.6094 3.9724 19 6 2.0721 -2.3196 5.2369 20 6 2.2696 -1.2897 6.3515 21 7 3.2489 -0.2833 5.9220 22 6 2.7770 0.4450 4.7374 23 1 3.5094 1.2040 4.4621 24 6 1.4394 1.1179 5.0520 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7517 -1.7716 -1.2055 29 1 1.6055 -0.2619 -2.1369 30 1 3.8533 0.4370 -1.3572 31 1 3.9995 -1.0728 -0.4258 32 1 7.2199 -0.8018 -2.1910 33 1 2.9172 -1.1205 1.0289 34 1 2.7587 1.0462 2.1183 35 1 1.0869 0.6164 2.5525 36 1 0.6145 -1.1449 4.1683 37 1 1.4810 -2.3327 3.1631 38 1 3.0194 -2.8173 5.0294 39 1 1.3335 -3.0576 5.5499 40 1 2.6332 -1.7907 7.2487 41 1 1.3190 -0.8021 6.5681 42 1 3.4675 0.3527 6.6743 43 1 0.7068 0.3592 5.3268 44 1 1.5691 1.8146 5.8801 45 1 1.0893 1.6590 4.1729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246112509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:53 Heat of formation + Delta-G solvation = -30.962891 kcal Electronic energy + Delta-G solvation = -19685.139261 eV Core-core repulsion = 16928.870827 eV Total energy + Delta-G solvation = -2756.268434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.56634 -36.98563 -33.69358 -32.58157 -32.22034 -30.24157 -29.04623 -27.23564 -25.34002 -24.48147 -22.80943 -21.60016 -21.16577 -19.52371 -18.37068 -16.75736 -16.29421 -15.62160 -14.97201 -14.86030 -14.48848 -14.31716 -13.74077 -13.57516 -13.08081 -12.98156 -12.58685 -12.55413 -12.45874 -12.17303 -11.82928 -11.73463 -11.47809 -11.30555 -11.09170 -10.90756 -10.80439 -10.49726 -10.41870 -10.36721 -10.08546 -9.97664 -9.72082 -9.24343 -8.99320 -8.48139 -8.34235 -7.89089 -5.98913 -4.00892 3.32224 3.39757 3.44102 4.08491 4.47523 4.55239 4.87470 4.88258 5.00013 5.08672 5.23644 5.35103 5.36983 5.44223 5.47243 5.52632 5.58311 5.72170 5.77674 5.81497 5.88723 5.94603 5.97534 6.02781 6.03529 6.18970 6.22853 6.24896 6.40257 6.50435 6.54406 6.57676 6.63361 6.94386 6.98966 7.11828 7.31068 7.58512 7.65179 7.83143 7.96284 8.02695 8.44584 9.06176 9.63365 11.12370 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.004361 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.601076 B = 6419.476903 C = 6963.524836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 H 0.035 0.965 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.684 5.684 15 C 0.064 3.936 16 C -0.076 4.076 17 H 0.078 0.922 18 C -0.106 4.106 19 C -0.120 4.120 20 C 0.055 3.945 21 N -0.683 5.683 22 C 0.088 3.912 23 H 0.080 0.920 24 C -0.189 4.189 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.011 0.989 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.351 0.649 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.031 0.969 42 H 0.338 0.662 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 2.119 15.678 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.053 0.947 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.319 5.319 15 C -0.066 4.066 16 C -0.095 4.095 17 H 0.096 0.904 18 C -0.143 4.143 19 C -0.158 4.158 20 C -0.074 4.074 21 N -0.313 5.313 22 C -0.022 4.022 23 H 0.098 0.902 24 C -0.248 4.248 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.173 0.827 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.156 0.844 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.209 1.442 15.502 18.617 hybrid contribution 0.584 0.764 -0.621 1.144 sum -9.625 2.206 14.881 17.859 Atomic orbital electron populations 1.21779 0.95931 1.01588 0.99977 1.21581 0.94359 0.96037 0.90726 0.94652 1.21820 0.99638 0.99410 0.94315 1.19127 0.88815 0.96803 0.96933 1.21282 0.91944 1.34094 1.08340 0.92649 1.25023 0.97094 0.95627 0.96683 1.69969 1.02312 1.44200 1.37026 0.86556 0.78859 0.79486 0.83236 1.19736 1.21078 1.21009 1.60586 1.34658 1.32420 1.04226 1.22013 0.99799 0.93971 0.90809 1.21131 0.99872 0.95577 0.92902 0.90366 1.21522 0.97588 0.98060 0.97163 1.21624 1.01571 0.97297 0.95314 1.21940 0.93873 0.93829 0.97786 1.60423 1.44265 1.18264 1.08363 1.21531 0.94797 0.94807 0.91070 0.90182 1.22613 0.99613 1.00788 1.01807 0.93182 0.92442 0.93965 0.92506 0.92878 0.97036 0.96601 0.93097 0.82693 0.95574 0.91592 0.92686 0.90452 0.91260 0.92063 0.91424 0.95074 0.84429 0.91911 0.93313 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.41 37.16 0.35 -1.65 16 2 C 0.08 1.44 2.65 -67.71 -0.18 1.26 16 3 H 0.04 0.65 7.80 -51.93 -0.40 0.24 16 4 C -0.11 -2.37 4.74 -26.73 -0.13 -2.49 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 7 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 10 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 N -0.68 -11.39 5.82 -106.72 -0.62 -12.01 16 15 C 0.06 0.92 4.35 -3.82 -0.02 0.90 16 16 C -0.08 -0.99 2.27 -90.54 -0.21 -1.19 16 17 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.11 -1.29 4.84 -26.61 -0.13 -1.42 16 19 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 20 C 0.05 0.54 6.25 -3.83 -0.02 0.52 16 21 N -0.68 -7.29 6.65 -106.76 -0.71 -8.00 16 22 C 0.09 1.00 3.22 -67.72 -0.22 0.78 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 C -0.19 -1.86 8.21 37.16 0.31 -1.56 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.42 6.43 -51.93 -0.33 0.09 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 33 H 0.35 6.62 6.47 -39.29 -0.25 6.37 16 34 H 0.03 0.40 8.05 -51.93 -0.42 -0.02 16 35 H 0.07 0.89 5.99 -51.93 -0.31 0.58 16 36 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 37 H 0.08 1.06 7.83 -51.93 -0.41 0.65 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.29 6.19 -51.93 -0.32 -0.03 16 42 H 0.34 3.01 8.90 -39.29 -0.35 2.66 16 43 H 0.06 0.63 4.80 -51.93 -0.25 0.38 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.65 6.53 -51.93 -0.34 0.31 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -29.23 336.64 -9.80 -39.03 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.31 Total: 4.83 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.95 Total: -19.47 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.59 Total: -46.28 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.23 -9.80 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246112509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.069 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds