Wall clock time and date at job start Sun Mar 29 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47414 * 239.99679 * 2 1 3 5 5 C 1.53002 * 109.46953 * 175.00121 * 4 2 1 6 6 C 1.50696 * 109.47060 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99783 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00307 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99720 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00212 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47101 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47016 * 119.99740 * 10 8 6 13 13 H 1.48501 * 109.46758 * 240.00070 * 10 8 6 14 14 N 1.46906 * 109.46839 * 119.99889 * 2 1 3 15 15 C 1.46902 * 110.99573 * 275.00202 * 14 2 1 16 16 C 1.53008 * 109.46622 * 179.97438 * 15 14 2 17 17 H 1.08991 * 109.50406 * 54.99872 * 16 15 14 18 18 C 1.53118 * 109.50468 * 294.91919 * 16 15 14 19 19 C 1.53120 * 109.16142 * 182.44576 * 18 16 15 20 20 C 1.53041 * 109.30852 * 57.59206 * 19 18 16 21 21 N 1.46843 * 109.52763 * 300.84731 * 20 19 18 22 22 C 1.46845 * 111.19799 * 61.73739 * 21 20 19 23 23 H 1.09002 * 109.46355 * 178.24606 * 22 21 20 24 24 C 1.53005 * 109.46089 * 58.27817 * 22 21 20 25 25 H 1.09002 * 109.46966 * 60.00739 * 1 2 3 26 26 H 1.09008 * 109.46883 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47627 * 300.00395 * 1 2 3 28 28 H 1.09002 * 109.47133 * 295.00220 * 4 2 1 29 29 H 1.08998 * 109.47172 * 55.00025 * 4 2 1 30 30 H 1.09002 * 109.47282 * 300.00007 * 5 4 2 31 31 H 1.08997 * 109.46989 * 60.00434 * 5 4 2 32 32 H 0.97000 * 120.00317 * 180.02562 * 9 8 6 33 33 H 1.00896 * 111.00309 * 151.04614 * 14 2 1 34 34 H 1.08990 * 109.47358 * 299.99539 * 15 14 2 35 35 H 1.09004 * 109.47457 * 60.00221 * 15 14 2 36 36 H 1.09003 * 109.52677 * 302.31417 * 18 16 15 37 37 H 1.09005 * 109.52241 * 62.49961 * 18 16 15 38 38 H 1.08998 * 109.46929 * 297.66000 * 19 18 16 39 39 H 1.08998 * 109.50594 * 177.55994 * 19 18 16 40 40 H 1.09003 * 109.46139 * 180.82161 * 20 19 18 41 41 H 1.09006 * 109.45910 * 60.86064 * 20 19 18 42 42 H 1.00903 * 111.00020 * 185.83789 * 21 20 19 43 43 H 1.08997 * 109.47148 * 299.94494 * 24 22 21 44 44 H 1.08997 * 109.46982 * 59.94781 * 24 22 21 45 45 H 1.09004 * 109.46931 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0674 -1.3243 -2.5435 7 1 3.3690 -1.8054 -3.2123 8 6 5.4188 -1.3615 -2.8147 9 7 6.2692 -0.7760 -2.0001 10 14 6.0415 -2.2422 -4.3398 11 1 4.8916 -2.8136 -5.0857 12 1 6.7650 -1.2782 -5.2073 13 1 6.9630 -3.3353 -3.9384 14 7 2.0196 -0.6925 1.1995 15 6 2.0823 0.2227 2.3469 16 6 2.5948 -0.5331 3.5746 17 1 3.5504 -1.0022 3.3404 18 6 1.5810 -1.6094 3.9724 19 6 2.0721 -2.3196 5.2369 20 6 2.2696 -1.2897 6.3515 21 7 3.2489 -0.2833 5.9220 22 6 2.7770 0.4450 4.7374 23 1 3.5094 1.2040 4.4621 24 6 1.4394 1.1179 5.0520 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.7517 -1.7716 -1.2055 29 1 1.6055 -0.2619 -2.1369 30 1 3.8533 0.4370 -1.3572 31 1 3.9995 -1.0728 -0.4258 32 1 7.2199 -0.8018 -2.1910 33 1 2.9172 -1.1205 1.0289 34 1 2.7587 1.0462 2.1183 35 1 1.0869 0.6164 2.5525 36 1 0.6145 -1.1449 4.1683 37 1 1.4810 -2.3327 3.1631 38 1 3.0194 -2.8173 5.0294 39 1 1.3335 -3.0576 5.5499 40 1 2.6332 -1.7907 7.2487 41 1 1.3190 -0.8021 6.5681 42 1 3.4675 0.3527 6.6743 43 1 0.7068 0.3592 5.3268 44 1 1.5691 1.8146 5.8801 45 1 1.0893 1.6590 4.1729 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246112509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:53 Heat of formation + Delta-G solvation = -50.018431 kcal Electronic energy + Delta-G solvation = -19685.965571 eV Core-core repulsion = 16928.870827 eV Total energy + Delta-G solvation = -2757.094745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53929 -38.40033 -35.43363 -34.16153 -33.10853 -31.81542 -30.46749 -28.15465 -27.10262 -25.74416 -23.82751 -23.19732 -22.38367 -21.06301 -19.37843 -18.51217 -17.60312 -16.87041 -16.54475 -16.25587 -15.80763 -15.49988 -14.98949 -14.56205 -14.48727 -14.33866 -13.90112 -13.85122 -13.57953 -13.48941 -13.12490 -13.06637 -12.86001 -12.73329 -12.62983 -12.31767 -12.28690 -11.94669 -11.75843 -11.54514 -11.49351 -11.32200 -11.07725 -11.03927 -10.90662 -10.55919 -9.31201 -9.25413 -8.20830 -6.31599 1.38918 1.39400 1.52721 2.40380 3.11799 3.15600 3.41196 3.87104 3.95770 3.99728 4.10898 4.19354 4.32672 4.34206 4.44642 4.51337 4.52911 4.58557 4.66153 4.77007 4.78486 4.81779 4.90179 5.00314 5.01657 5.05521 5.08231 5.08939 5.19637 5.20918 5.24679 5.26414 5.45117 5.51840 5.54682 5.60587 5.70753 5.83917 6.13516 6.24552 6.29520 6.44706 6.58030 6.85362 7.37796 8.90886 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.004361 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.601076 B = 6419.476903 C = 6963.524836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.086 3.914 3 H 0.025 0.975 4 C -0.101 4.101 5 C 0.027 3.973 6 C -0.542 4.542 7 H 0.058 0.942 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.683 5.683 15 C 0.069 3.931 16 C -0.072 4.072 17 H 0.047 0.953 18 C -0.100 4.100 19 C -0.120 4.120 20 C 0.057 3.943 21 N -0.695 5.695 22 C 0.091 3.909 23 H 0.071 0.929 24 C -0.182 4.182 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.056 0.944 30 H -0.018 1.018 31 H -0.003 1.003 32 H 0.263 0.737 33 H 0.335 0.665 34 H 0.012 0.988 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.350 0.650 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.640 1.938 16.210 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.024 4.024 3 H 0.043 0.957 4 C -0.139 4.139 5 C -0.010 4.010 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.315 5.315 15 C -0.061 4.061 16 C -0.091 4.091 17 H 0.066 0.934 18 C -0.137 4.137 19 C -0.157 4.157 20 C -0.072 4.072 21 N -0.327 5.327 22 C -0.020 4.020 23 H 0.089 0.911 24 C -0.240 4.240 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.000 1.000 31 H 0.016 0.984 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.030 0.970 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.169 0.831 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.716 1.270 16.047 19.909 hybrid contribution 1.082 0.832 -0.762 1.563 sum -10.634 2.102 15.285 18.738 Atomic orbital electron populations 1.21688 0.93054 1.02128 1.01445 1.21539 0.96483 0.94801 0.89538 0.95736 1.21639 0.96047 0.99844 0.96361 1.18998 0.92237 0.94331 0.95410 1.21724 0.92557 1.34428 1.09292 0.92346 1.25958 0.97347 0.96328 1.00053 1.70099 1.02735 1.45444 1.39028 0.85422 0.78430 0.78274 0.79071 1.18599 1.20389 1.20378 1.60699 1.33430 1.32807 1.04592 1.22054 1.00402 0.93234 0.90405 1.21053 0.98597 0.96175 0.93267 0.93444 1.21447 0.97714 0.97334 0.97244 1.21622 1.01081 0.97874 0.95160 1.21958 0.94299 0.93345 0.97596 1.60369 1.44879 1.18816 1.08624 1.21417 0.95719 0.94119 0.90697 0.91061 1.22530 0.98338 1.00922 1.02254 0.92034 0.92319 0.92216 0.92649 0.92514 0.99955 0.98447 0.92844 0.84608 0.97015 0.89863 0.91579 0.92368 0.93050 0.90399 0.90066 0.93873 0.83073 0.91574 0.91832 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.41 71.98 0.68 -2.78 16 2 C 0.09 3.00 2.65 44.91 0.12 3.12 16 3 H 0.02 0.91 7.80 -2.39 -0.02 0.89 16 4 C -0.10 -4.24 4.74 30.59 0.15 -4.10 16 5 C 0.03 1.46 4.80 29.85 0.14 1.61 16 6 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 0.05 5.46 84.66 0.46 0.51 16 9 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 N -0.68 -23.17 5.82 -491.55 -2.86 -26.03 16 15 C 0.07 1.98 4.35 86.31 0.38 2.35 16 16 C -0.07 -1.89 2.27 -10.74 -0.02 -1.92 16 17 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 18 C -0.10 -2.37 4.84 30.67 0.15 -2.22 16 19 C -0.12 -2.48 6.09 30.65 0.19 -2.29 16 20 C 0.06 1.00 6.25 86.33 0.54 1.54 16 21 N -0.70 -13.99 6.65 -491.67 -3.27 -17.26 16 22 C 0.09 1.99 3.22 44.94 0.14 2.13 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 C -0.18 -3.18 8.21 71.98 0.59 -2.59 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.06 1.45 7.45 -2.39 -0.02 1.43 16 28 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 31 H 0.00 -0.15 6.43 -2.39 -0.02 -0.17 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.33 13.31 6.47 -89.70 -0.58 12.73 16 34 H 0.01 0.37 8.05 -2.39 -0.02 0.35 16 35 H 0.08 2.12 5.99 -2.38 -0.01 2.10 16 36 H 0.07 1.43 6.56 -2.39 -0.02 1.41 16 37 H 0.06 1.60 7.83 -2.38 -0.02 1.58 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.04 0.68 6.19 -2.38 -0.01 0.66 16 42 H 0.35 5.62 8.90 -89.69 -0.80 4.82 16 43 H 0.07 1.13 4.80 -2.39 -0.01 1.12 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 1.13 6.53 -2.38 -0.02 1.11 16 Total: -1.00 -63.42 336.64 -0.50 -63.92 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.43 Total: 25.42 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 3.74 Total: -35.81 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -5.84 Total: -100.53 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.42 -0.50 -63.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246112509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.902 kcal (2) G-P(sol) polarization free energy of solvation -63.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds