Wall clock time and date at job start Sun Mar 29 2020 23:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47394 * 2 1 4 4 C 1.53002 * 109.46982 * 239.99794 * 2 1 3 5 5 C 1.53000 * 109.47198 * 174.82515 * 4 2 1 6 6 C 1.50701 * 109.46906 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99719 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99953 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00119 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47337 * 89.99665 * 10 8 6 12 12 H 1.48497 * 109.47045 * 209.99763 * 10 8 6 13 13 H 1.48501 * 109.47142 * 329.99463 * 10 8 6 14 14 N 1.46896 * 109.47129 * 120.00105 * 2 1 3 15 15 C 1.47636 * 111.00018 * 50.60610 * 14 2 1 16 16 C 1.50822 * 108.08815 * 150.32273 * 15 14 2 17 17 C 1.53865 * 111.59709 * 94.99727 * 16 15 14 18 18 C 1.54171 * 112.00648 * 319.11897 * 17 16 15 19 19 C 1.52992 * 108.85392 * 197.64507 * 18 17 16 20 20 N 1.46901 * 108.85492 * 79.25851 * 18 17 16 21 21 C 1.50750 * 112.60772 * 318.45042 * 18 17 16 22 22 C 1.39785 * 111.00103 * 281.70939 * 14 2 1 23 23 H 1.08997 * 109.47803 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47036 * 300.00503 * 1 2 3 25 25 H 1.09004 * 109.47138 * 59.99602 * 1 2 3 26 26 H 1.09003 * 109.47319 * 294.83158 * 4 2 1 27 27 H 1.09005 * 109.46988 * 54.82927 * 4 2 1 28 28 H 1.08998 * 109.47300 * 300.00110 * 5 4 2 29 29 H 1.09005 * 109.46815 * 60.00306 * 5 4 2 30 30 H 0.97001 * 120.00371 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.74789 * 269.98358 * 15 14 2 32 32 H 1.08996 * 109.74715 * 30.66743 * 15 14 2 33 33 H 1.08993 * 109.05111 * 215.63508 * 16 15 14 34 34 H 1.09007 * 109.04633 * 334.53025 * 16 15 14 35 35 H 1.08996 * 108.99085 * 198.44432 * 17 16 15 36 36 H 1.09006 * 108.93705 * 79.75349 * 17 16 15 37 37 H 1.08999 * 109.47303 * 183.08668 * 19 18 17 38 38 H 1.09002 * 109.47419 * 303.08672 * 19 18 17 39 39 H 1.08997 * 109.47531 * 63.08153 * 19 18 17 40 40 H 1.00899 * 111.00180 * 56.91522 * 20 18 17 41 41 H 1.00900 * 111.00243 * 180.86999 * 20 18 17 42 42 H 1.09002 * 109.54800 * 333.15893 * 21 18 17 43 43 H 1.09000 * 109.54455 * 212.87867 * 21 18 17 44 44 H 1.09001 * 109.01405 * 309.72352 * 22 14 2 45 45 H 1.08997 * 109.01561 * 68.61787 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5644 -0.6096 -1.3160 6 6 4.0667 -1.3207 -2.5462 7 1 3.3684 -1.8035 -3.2138 8 6 5.4176 -1.3538 -2.8199 9 7 5.8559 -1.9739 -3.8936 10 14 6.6253 -0.5181 -1.6655 11 1 7.0648 -1.4829 -0.6258 12 1 7.8048 -0.0505 -2.4371 13 1 5.9664 0.6435 -1.0161 14 7 2.0196 -0.6925 1.1994 15 6 1.3713 -2.0101 1.3513 16 6 2.3376 -2.9290 2.0561 17 6 2.0855 -2.9598 3.5736 18 6 1.7712 -1.5589 4.1355 19 6 1.9680 -1.5792 5.6526 20 7 0.3680 -1.2350 3.8458 21 6 2.6509 -0.4868 3.5445 22 6 1.9369 0.1338 2.3238 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.7542 -1.7722 -1.2041 27 1 1.6029 -0.2637 -2.1368 28 1 3.8501 0.4412 -1.3612 29 1 4.0014 -1.0672 -0.4284 30 1 6.8063 -1.9969 -4.0864 31 1 0.4623 -1.9072 1.9438 32 1 1.1270 -2.4158 0.3696 33 1 2.2272 -3.9365 1.6552 34 1 3.3551 -2.5838 1.8723 35 1 2.9719 -3.3513 4.0726 36 1 1.2437 -3.6212 3.7791 37 1 1.6957 -0.6087 6.0673 38 1 1.3360 -2.3517 6.0907 39 1 3.0124 -1.7918 5.8808 40 1 -0.2509 -1.9341 4.2282 41 1 0.1309 -0.3160 4.1882 42 1 3.5979 -0.9247 3.2292 43 1 2.8353 0.2860 4.2908 44 1 2.3975 1.0944 2.0932 45 1 0.8874 0.2935 2.5708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246553413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:43 Heat of formation + Delta-G solvation = 1.031785 kcal Electronic energy + Delta-G solvation = -20710.396097 eV Core-core repulsion = 17955.515056 eV Total energy + Delta-G solvation = -2754.881041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04048 -37.02559 -33.44006 -32.53848 -31.81004 -29.96900 -29.36668 -27.57998 -25.74638 -25.17334 -22.97472 -21.38977 -20.23413 -18.95437 -18.65072 -16.61719 -16.44240 -15.87784 -15.05644 -14.62474 -14.33193 -14.10539 -13.67990 -13.18650 -13.06055 -12.85022 -12.64317 -12.55146 -12.37266 -12.06901 -11.98746 -11.66992 -11.38842 -11.26428 -11.10991 -10.82837 -10.53606 -10.39173 -10.24362 -10.17153 -10.01856 -9.73415 -9.45097 -9.34062 -8.91539 -8.69240 -8.36148 -7.28634 -5.88475 -3.83609 3.43904 3.49698 3.57464 4.36175 4.48113 4.61343 4.69291 4.85796 5.00485 5.28256 5.36605 5.47467 5.48194 5.50283 5.56482 5.58987 5.70724 5.76456 5.79667 5.86769 5.95348 6.00362 6.11540 6.17387 6.23605 6.28117 6.34880 6.42448 6.52510 6.54906 6.63783 6.72544 6.81583 6.94999 7.11783 7.24196 7.34038 7.63175 7.75921 7.89759 8.00488 8.14060 8.73258 9.18506 9.76423 11.25599 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.006216 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.524002 B = 4503.644522 C = 4962.840946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.086 3.914 3 H 0.068 0.932 4 C -0.092 4.092 5 C -0.005 4.005 6 C -0.513 4.513 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.911 5.911 10 Si 0.881 3.119 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.265 1.265 14 N -0.538 5.538 15 C 0.056 3.944 16 C -0.115 4.115 17 C -0.101 4.101 18 C 0.119 3.881 19 C -0.181 4.181 20 N -0.829 5.829 21 C -0.112 4.112 22 C 0.084 3.916 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.006 0.994 29 H 0.026 0.974 30 H 0.260 0.740 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.332 0.668 41 H 0.335 0.665 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 2.054 19.080 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.130 4.130 5 C -0.042 4.042 6 C -0.551 4.551 7 H 0.085 0.915 8 C -0.137 4.137 9 N -0.552 5.552 10 Si 0.709 3.291 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.190 1.190 14 N -0.262 5.262 15 C -0.071 4.071 16 C -0.153 4.153 17 C -0.139 4.139 18 C 0.027 3.973 19 C -0.240 4.240 20 N -0.359 5.359 21 C -0.150 4.150 22 C -0.046 4.046 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.409 1.859 18.189 21.039 hybrid contribution -0.050 0.551 1.746 1.832 sum -10.459 2.411 19.935 22.641 Atomic orbital electron populations 1.22421 0.98464 1.01737 1.00815 1.21791 0.91472 0.97662 0.91262 0.91359 1.21521 0.98852 0.99020 0.93617 1.19449 0.91624 0.96057 0.97072 1.21288 0.92764 1.33524 1.07553 0.91487 1.25017 0.98434 0.95126 0.95079 1.69935 1.14333 1.44276 1.26614 0.86747 0.80538 0.80710 0.81084 1.20478 1.21907 1.18951 1.58859 1.60084 1.04279 1.02959 1.21996 0.96999 0.88237 0.99857 1.21368 1.01742 0.99177 0.93033 1.21953 1.00508 0.94295 0.97103 1.20638 0.88918 0.95899 0.91856 1.22760 1.02397 1.01180 0.97680 1.59460 1.03298 1.06883 1.66281 1.21626 0.99426 0.96854 0.97116 1.20719 0.98796 0.94995 0.90064 0.92544 0.93501 0.92946 0.92827 0.93155 0.97573 0.95603 0.93068 0.90101 0.91813 0.92609 0.90815 0.92382 0.92747 0.92952 0.93075 0.92155 0.85542 0.85070 0.90461 0.92368 0.93025 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 8.65 37.16 0.32 -2.16 16 2 C 0.09 1.45 2.23 -67.72 -0.15 1.30 16 3 H 0.07 1.18 7.67 -51.93 -0.40 0.78 16 4 C -0.09 -1.91 4.59 -26.73 -0.12 -2.03 16 5 C 0.00 -0.12 3.93 -27.88 -0.11 -0.23 16 6 C -0.51 -15.25 9.66 -34.44 -0.33 -15.59 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -29.19 13.96 55.43 0.77 -28.42 16 10 Si 0.88 22.94 27.47 -169.99 -4.67 18.27 16 11 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 13 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 14 N -0.54 -8.56 3.30 -231.99 -0.77 -9.33 16 15 C 0.06 0.83 3.71 -4.51 -0.02 0.81 16 16 C -0.12 -1.64 5.41 -27.37 -0.15 -1.79 16 17 C -0.10 -1.13 4.99 -25.67 -0.13 -1.26 16 18 C 0.12 1.19 0.76 -132.12 -0.10 1.09 16 19 C -0.18 -1.53 8.32 37.15 0.31 -1.22 16 20 N -0.83 -7.40 4.62 0.32 0.00 -7.40 16 21 C -0.11 -1.34 5.04 -27.11 -0.14 -1.48 16 22 C 0.08 1.15 4.67 -6.74 -0.03 1.12 16 23 H 0.06 0.80 6.60 -51.93 -0.34 0.46 16 24 H 0.05 0.61 7.16 -51.93 -0.37 0.24 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 1.13 6.33 -51.93 -0.33 0.80 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 29 H 0.03 0.66 7.19 -51.93 -0.37 0.28 16 30 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 31 H 0.08 1.09 5.18 -51.93 -0.27 0.82 16 32 H 0.06 1.05 5.48 -51.93 -0.28 0.77 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.24 7.27 -51.92 -0.38 0.86 16 35 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16 36 H 0.05 0.56 7.96 -51.93 -0.41 0.15 16 37 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.33 2.56 8.82 -39.29 -0.35 2.21 16 41 H 0.34 2.70 8.10 -39.29 -0.32 2.39 16 42 H 0.08 1.08 7.11 -51.93 -0.37 0.71 16 43 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 44 H 0.05 0.74 7.71 -51.93 -0.40 0.34 16 45 H 0.04 0.49 4.75 -51.93 -0.25 0.24 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -31.33 322.80 -8.69 -40.01 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.15 Total: 1.61 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -0.74 Total: -19.62 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.01 Total: -45.14 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.67 Total: 18.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.33 -8.69 -40.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246553413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.045 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds