Wall clock time and date at job start Sun Mar 29 2020 23:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47394 * 2 1 4 4 C 1.53002 * 109.46982 * 239.99794 * 2 1 3 5 5 C 1.53000 * 109.47198 * 174.82515 * 4 2 1 6 6 C 1.50701 * 109.46906 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99719 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99953 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00119 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47337 * 89.99665 * 10 8 6 12 12 H 1.48497 * 109.47045 * 209.99763 * 10 8 6 13 13 H 1.48501 * 109.47142 * 329.99463 * 10 8 6 14 14 N 1.46896 * 109.47129 * 120.00105 * 2 1 3 15 15 C 1.47636 * 111.00018 * 50.60610 * 14 2 1 16 16 C 1.50822 * 108.08815 * 150.32273 * 15 14 2 17 17 C 1.53865 * 111.59709 * 94.99727 * 16 15 14 18 18 C 1.54171 * 112.00648 * 319.11897 * 17 16 15 19 19 C 1.52992 * 108.85392 * 197.64507 * 18 17 16 20 20 N 1.46901 * 108.85492 * 79.25851 * 18 17 16 21 21 C 1.50750 * 112.60772 * 318.45042 * 18 17 16 22 22 C 1.39785 * 111.00103 * 281.70939 * 14 2 1 23 23 H 1.08997 * 109.47803 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47036 * 300.00503 * 1 2 3 25 25 H 1.09004 * 109.47138 * 59.99602 * 1 2 3 26 26 H 1.09003 * 109.47319 * 294.83158 * 4 2 1 27 27 H 1.09005 * 109.46988 * 54.82927 * 4 2 1 28 28 H 1.08998 * 109.47300 * 300.00110 * 5 4 2 29 29 H 1.09005 * 109.46815 * 60.00306 * 5 4 2 30 30 H 0.97001 * 120.00371 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.74789 * 269.98358 * 15 14 2 32 32 H 1.08996 * 109.74715 * 30.66743 * 15 14 2 33 33 H 1.08993 * 109.05111 * 215.63508 * 16 15 14 34 34 H 1.09007 * 109.04633 * 334.53025 * 16 15 14 35 35 H 1.08996 * 108.99085 * 198.44432 * 17 16 15 36 36 H 1.09006 * 108.93705 * 79.75349 * 17 16 15 37 37 H 1.08999 * 109.47303 * 183.08668 * 19 18 17 38 38 H 1.09002 * 109.47419 * 303.08672 * 19 18 17 39 39 H 1.08997 * 109.47531 * 63.08153 * 19 18 17 40 40 H 1.00899 * 111.00180 * 56.91522 * 20 18 17 41 41 H 1.00900 * 111.00243 * 180.86999 * 20 18 17 42 42 H 1.09002 * 109.54800 * 333.15893 * 21 18 17 43 43 H 1.09000 * 109.54455 * 212.87867 * 21 18 17 44 44 H 1.09001 * 109.01405 * 309.72352 * 22 14 2 45 45 H 1.08997 * 109.01561 * 68.61787 * 22 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5644 -0.6096 -1.3160 6 6 4.0667 -1.3207 -2.5462 7 1 3.3684 -1.8035 -3.2138 8 6 5.4176 -1.3538 -2.8199 9 7 5.8559 -1.9739 -3.8936 10 14 6.6253 -0.5181 -1.6655 11 1 7.0648 -1.4829 -0.6258 12 1 7.8048 -0.0505 -2.4371 13 1 5.9664 0.6435 -1.0161 14 7 2.0196 -0.6925 1.1994 15 6 1.3713 -2.0101 1.3513 16 6 2.3376 -2.9290 2.0561 17 6 2.0855 -2.9598 3.5736 18 6 1.7712 -1.5589 4.1355 19 6 1.9680 -1.5792 5.6526 20 7 0.3680 -1.2350 3.8458 21 6 2.6509 -0.4868 3.5445 22 6 1.9369 0.1338 2.3238 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.7542 -1.7722 -1.2041 27 1 1.6029 -0.2637 -2.1368 28 1 3.8501 0.4412 -1.3612 29 1 4.0014 -1.0672 -0.4284 30 1 6.8063 -1.9969 -4.0864 31 1 0.4623 -1.9072 1.9438 32 1 1.1270 -2.4158 0.3696 33 1 2.2272 -3.9365 1.6552 34 1 3.3551 -2.5838 1.8723 35 1 2.9719 -3.3513 4.0726 36 1 1.2437 -3.6212 3.7791 37 1 1.6957 -0.6087 6.0673 38 1 1.3360 -2.3517 6.0907 39 1 3.0124 -1.7918 5.8808 40 1 -0.2509 -1.9341 4.2282 41 1 0.1309 -0.3160 4.1882 42 1 3.5979 -0.9247 3.2292 43 1 2.8353 0.2860 4.2908 44 1 2.3975 1.0944 2.0932 45 1 0.8874 0.2935 2.5708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246553413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:43 Heat of formation + Delta-G solvation = -19.497181 kcal Electronic energy + Delta-G solvation = -20711.286300 eV Core-core repulsion = 17955.515056 eV Total energy + Delta-G solvation = -2755.771244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09742 -38.15802 -35.38372 -33.80831 -33.38908 -31.38249 -30.40966 -28.50051 -27.08488 -26.77563 -23.98749 -22.98147 -21.88444 -20.18898 -19.62836 -18.79150 -17.51334 -16.99311 -16.30282 -15.90169 -15.83486 -15.35918 -14.84200 -14.80673 -14.27867 -14.16332 -14.02284 -13.71352 -13.53025 -13.29089 -13.22824 -13.00068 -12.80921 -12.71892 -12.38479 -12.17047 -11.85265 -11.76504 -11.57576 -11.40932 -11.33386 -11.29818 -11.19448 -11.11717 -10.91768 -10.70551 -9.50707 -8.41626 -8.25649 -6.27022 1.35810 1.37152 1.51180 2.39423 3.10698 3.28577 3.64934 3.84330 4.01180 4.08188 4.18070 4.35998 4.40449 4.47666 4.50068 4.56421 4.70772 4.76975 4.77989 4.83523 4.93765 4.96828 4.99958 5.08246 5.08510 5.14367 5.18501 5.25798 5.25997 5.30367 5.39238 5.42537 5.47595 5.58927 5.66998 5.73851 5.76551 5.80603 6.36110 6.40496 6.60419 6.75302 6.80785 6.98031 7.37143 8.91629 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.006216 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.524002 B = 4503.644522 C = 4962.840946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 H 0.067 0.933 4 C -0.086 4.086 5 C 0.006 3.994 6 C -0.527 4.527 7 H 0.027 0.973 8 C 0.004 3.996 9 N -0.956 5.956 10 Si 0.952 3.048 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.250 1.250 14 N -0.556 5.556 15 C 0.062 3.938 16 C -0.115 4.115 17 C -0.096 4.096 18 C 0.125 3.875 19 C -0.174 4.174 20 N -0.834 5.834 21 C -0.109 4.109 22 C 0.083 3.917 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.005 0.995 29 H 0.022 0.978 30 H 0.264 0.736 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.342 0.658 41 H 0.344 0.656 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.139 3.220 22.067 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.016 4.016 3 H 0.085 0.915 4 C -0.124 4.124 5 C -0.031 4.031 6 C -0.565 4.565 7 H 0.046 0.954 8 C -0.192 4.192 9 N -0.597 5.597 10 Si 0.776 3.224 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.174 1.174 14 N -0.280 5.280 15 C -0.064 4.064 16 C -0.153 4.153 17 C -0.134 4.134 18 C 0.032 3.968 19 C -0.233 4.233 20 N -0.366 5.366 21 C -0.147 4.147 22 C -0.047 4.047 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.023 0.977 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.331 3.029 21.189 24.219 hybrid contribution 0.207 0.123 0.718 0.757 sum -11.124 3.151 21.907 24.771 Atomic orbital electron populations 1.22279 0.95963 1.02044 1.01973 1.21598 0.93379 0.96733 0.89864 0.91509 1.21406 0.95952 0.99106 0.95919 1.19310 0.94521 0.94887 0.94398 1.21646 0.92560 1.33618 1.08642 0.95446 1.25970 1.00595 0.95838 0.96823 1.70080 1.15100 1.45878 1.28681 0.85630 0.77910 0.80029 0.78849 1.19550 1.20979 1.17420 1.58796 1.60810 1.04890 1.03510 1.21969 0.97810 0.87767 0.98891 1.21344 0.99794 0.98580 0.95608 1.21905 1.01237 0.95745 0.94507 1.20467 0.89243 0.94260 0.92823 1.22660 1.02370 1.02165 0.96072 1.59302 1.02762 1.07830 1.66706 1.21600 0.98475 0.97766 0.96891 1.20781 0.99937 0.94268 0.89701 0.92642 0.91544 0.92542 0.93851 0.93686 0.97679 0.95984 0.92703 0.88181 0.94170 0.93133 0.93889 0.92244 0.91278 0.91937 0.92044 0.92649 0.84335 0.84074 0.92962 0.90658 0.93880 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 8.65 71.98 0.62 -3.67 16 2 C 0.09 3.02 2.23 44.92 0.10 3.12 16 3 H 0.07 2.21 7.67 -2.39 -0.02 2.20 16 4 C -0.09 -3.60 4.59 30.59 0.14 -3.46 16 5 C 0.01 0.32 3.93 29.85 0.12 0.44 16 6 C -0.53 -32.35 9.66 25.60 0.25 -32.11 16 7 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 8 C 0.00 0.22 5.47 84.66 0.46 0.68 16 9 N -0.96 -62.78 13.96 21.45 0.30 -62.48 16 10 Si 0.95 47.63 27.47 68.60 1.88 49.51 16 11 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 14 N -0.56 -17.13 3.30 -887.87 -2.93 -20.06 16 15 C 0.06 1.79 3.71 85.45 0.32 2.11 16 16 C -0.12 -3.26 5.41 30.18 0.16 -3.09 16 17 C -0.10 -1.98 4.99 31.28 0.16 -1.82 16 18 C 0.12 2.15 0.76 3.19 0.00 2.16 16 19 C -0.17 -2.35 8.32 71.98 0.60 -1.75 16 20 N -0.83 -11.96 4.62 -152.89 -0.71 -12.67 16 21 C -0.11 -2.38 5.04 30.35 0.15 -2.23 16 22 C 0.08 2.07 4.67 88.07 0.41 2.48 16 23 H 0.05 1.47 6.60 -2.39 -0.02 1.45 16 24 H 0.07 1.50 7.16 -2.38 -0.02 1.48 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.88 6.33 -2.39 -0.02 1.87 16 27 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.00 0.25 7.20 -2.39 -0.02 0.23 16 29 H 0.02 1.13 7.19 -2.38 -0.02 1.11 16 30 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 31 H 0.10 2.48 5.18 -2.39 -0.01 2.46 16 32 H 0.04 1.33 5.48 -2.39 -0.01 1.32 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.47 7.27 -2.38 -0.02 1.45 16 35 H 0.06 1.21 7.98 -2.39 -0.02 1.19 16 36 H 0.07 1.23 7.96 -2.38 -0.02 1.22 16 37 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.34 3.96 8.82 -89.69 -0.79 3.17 16 41 H 0.34 4.15 8.10 -89.69 -0.73 3.43 16 42 H 0.05 1.41 7.11 -2.39 -0.02 1.40 16 43 H 0.07 1.38 7.68 -2.39 -0.02 1.36 16 44 H 0.04 1.15 7.71 -2.39 -0.02 1.13 16 45 H 0.06 1.22 4.75 -2.39 -0.01 1.20 16 Total: -1.00 -69.10 322.80 1.43 -67.67 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.61 Total: 15.18 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 3.49 Total: -37.15 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.34 Total: -95.21 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.88 Total: 49.51 kcal Total: -69.10 1.43 -67.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246553413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.169 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds