Wall clock time and date at job start Sun Mar 29 2020 23:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46757 * 2 1 4 4 C 1.53008 * 109.46984 * 240.01237 * 2 1 3 5 5 C 1.52998 * 109.47235 * 174.99786 * 4 2 1 6 6 C 1.50693 * 109.47317 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99642 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00416 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99476 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00263 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46817 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47124 * 119.99705 * 10 8 6 13 13 H 1.48498 * 109.46777 * 239.99723 * 10 8 6 14 14 N 1.46896 * 109.47536 * 120.00895 * 2 1 3 15 15 C 1.46846 * 111.00008 * 60.57432 * 14 2 1 16 16 C 1.53041 * 109.52115 * 174.16389 * 15 14 2 17 17 H 1.09002 * 109.53478 * 299.21279 * 16 15 14 18 18 C 1.52996 * 109.49987 * 179.11857 * 16 15 14 19 19 C 1.53113 * 109.27889 * 59.17839 * 16 15 14 20 20 C 1.53122 * 109.15965 * 302.34471 * 19 16 15 21 21 C 1.46844 * 110.99607 * 296.36200 * 14 2 1 22 22 H 1.09000 * 109.46213 * 65.82923 * 21 14 2 23 23 C 1.52999 * 109.46812 * 305.84585 * 21 14 2 24 24 N 1.46893 * 109.47067 * 69.16635 * 23 21 14 25 25 H 1.09000 * 109.47135 * 299.99067 * 1 2 3 26 26 H 1.08998 * 109.47620 * 59.99491 * 1 2 3 27 27 H 1.09007 * 109.47198 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46411 * 294.99782 * 4 2 1 29 29 H 1.09000 * 109.47320 * 54.99104 * 4 2 1 30 30 H 1.09002 * 109.46712 * 299.99972 * 5 4 2 31 31 H 1.08998 * 109.46790 * 59.99519 * 5 4 2 32 32 H 0.97004 * 119.99531 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46107 * 54.14655 * 15 14 2 34 34 H 1.08999 * 109.45176 * 294.16975 * 15 14 2 35 35 H 1.08996 * 109.47462 * 300.19486 * 18 16 15 36 36 H 1.09004 * 109.47388 * 60.19770 * 18 16 15 37 37 H 1.09003 * 109.46965 * 180.19486 * 18 16 15 38 38 H 1.08997 * 109.52349 * 62.25096 * 19 16 15 39 39 H 1.09004 * 109.52290 * 182.43969 * 19 16 15 40 40 H 1.09002 * 109.49864 * 177.60157 * 20 19 16 41 41 H 1.09000 * 109.50149 * 297.71263 * 20 19 16 42 42 H 1.09003 * 109.47363 * 189.17008 * 23 21 14 43 43 H 1.09003 * 109.46737 * 309.17137 * 23 21 14 44 44 H 1.00904 * 111.00214 * 56.05225 * 24 23 21 45 45 H 1.00902 * 111.00118 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2495 5 6 3.5648 -0.6130 -1.3140 6 6 4.0671 -1.3237 -2.5442 7 1 3.3686 -1.8047 -3.2130 8 6 5.4184 -1.3608 -2.8155 9 7 6.2689 -0.7755 -2.0008 10 14 6.0412 -2.2423 -4.3402 11 1 4.8912 -2.8144 -5.0855 12 1 6.7643 -1.2788 -5.2084 13 1 6.9630 -3.3350 -3.9382 14 7 2.0197 -0.6926 1.1993 15 6 1.5602 -2.0871 1.2261 16 6 2.2054 -2.8155 2.4074 17 1 3.2895 -2.8055 2.2936 18 6 1.7094 -4.2622 2.4479 19 6 1.8215 -2.1067 3.7091 20 6 2.2683 -0.6440 3.6356 21 6 1.6212 0.0215 2.4189 22 1 0.5365 -0.0115 2.5210 23 6 2.0809 1.4781 2.3302 24 7 1.2979 2.1769 1.3025 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7516 -1.7713 -1.2059 29 1 1.6052 -0.2614 -2.1371 30 1 3.8531 0.4373 -1.3574 31 1 3.9994 -1.0727 -0.4263 32 1 7.2196 -0.8013 -2.1919 33 1 1.8433 -2.5807 0.2965 34 1 0.4758 -2.1099 1.3339 35 1 0.6253 -4.2716 2.5602 36 1 1.9830 -4.7663 1.5209 37 1 2.1666 -4.7796 3.2914 38 1 0.7406 -2.1512 3.8430 39 1 2.3139 -2.5963 4.5494 40 1 1.9598 -0.1234 4.5423 41 1 3.3532 -0.5993 3.5409 42 1 1.9326 1.9653 3.2940 43 1 3.1379 1.5099 2.0658 44 1 0.3091 2.1061 1.4909 45 1 1.5826 3.1418 1.2249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246571567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:07 Heat of formation + Delta-G solvation = -9.051035 kcal Electronic energy + Delta-G solvation = -20688.200332 eV Core-core repulsion = 17932.882067 eV Total energy + Delta-G solvation = -2755.318265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67757 -35.64665 -34.65160 -32.74521 -31.65576 -30.23604 -28.65992 -26.91081 -25.03515 -24.34674 -22.87265 -21.51579 -20.32115 -19.67931 -18.47321 -16.30889 -16.01202 -15.35088 -14.74362 -14.51786 -14.34163 -14.16052 -13.93906 -13.35283 -13.15491 -12.75957 -12.52980 -12.42006 -11.94877 -11.86937 -11.52370 -11.41425 -11.33290 -11.16875 -11.01511 -10.79124 -10.61486 -10.38912 -10.33509 -10.10071 -10.02195 -9.70110 -9.44003 -9.01569 -8.74689 -8.14640 -8.01295 -7.45714 -5.80003 -3.80291 3.40775 3.47918 3.52352 4.40057 4.59289 4.61076 4.95859 5.05158 5.14909 5.31764 5.46209 5.53686 5.55223 5.61640 5.74262 5.78486 5.84172 5.88632 5.90936 5.93613 5.99765 6.09559 6.13222 6.15633 6.24102 6.35812 6.41517 6.53126 6.56215 6.68517 6.71095 6.77136 7.01437 7.19066 7.38318 7.47571 7.52374 7.91087 7.94982 7.98034 8.23679 8.35890 8.69451 9.29823 9.81699 11.30847 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.006484 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.416339 B = 4317.344745 C = 4918.717894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.063 3.937 3 H 0.140 0.860 4 C -0.106 4.106 5 C 0.034 3.966 6 C -0.515 4.515 7 H 0.049 0.951 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.883 3.117 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.286 1.286 14 N -0.507 5.507 15 C 0.057 3.943 16 C -0.092 4.092 17 H 0.081 0.919 18 C -0.144 4.144 19 C -0.110 4.110 20 C -0.113 4.113 21 C 0.088 3.912 22 H 0.030 0.970 23 C 0.065 3.935 24 N -0.835 5.835 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.009 0.991 31 H 0.029 0.971 32 H 0.256 0.744 33 H 0.085 0.915 34 H 0.021 0.979 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.087 0.913 44 H 0.334 0.666 45 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 1.556 12.491 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.045 4.045 3 H 0.156 0.844 4 C -0.144 4.144 5 C -0.003 4.003 6 C -0.554 4.554 7 H 0.067 0.933 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.712 3.288 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.230 5.230 15 C -0.071 4.071 16 C -0.111 4.111 17 H 0.100 0.900 18 C -0.202 4.202 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.021 4.021 22 H 0.048 0.952 23 C -0.066 4.066 24 N -0.365 5.365 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.027 0.973 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.106 0.894 44 H 0.148 0.852 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.535 1.076 11.993 15.999 hybrid contribution -0.854 0.007 -0.068 0.857 sum -11.389 1.083 11.925 16.526 Atomic orbital electron populations 1.22402 1.00067 0.99770 1.00497 1.22603 0.90582 1.02352 0.88947 0.84357 1.21799 1.00532 0.97828 0.94264 1.18942 0.88382 0.96522 0.96472 1.21445 0.91751 1.33626 1.08559 0.93276 1.24986 0.97184 0.95884 0.96370 1.69999 1.01966 1.44606 1.36850 0.86679 0.78791 0.79562 0.83792 1.19959 1.21229 1.21236 1.62084 1.59166 1.00720 1.01054 1.22176 0.95777 0.90155 0.98976 1.21189 1.01701 0.93850 0.94365 0.90046 1.21775 1.00416 0.96290 1.01703 1.21588 1.00106 0.95494 0.97598 1.21597 1.01882 0.95402 0.96241 1.21557 0.96304 0.92804 0.91445 0.95182 1.21892 0.99836 0.93034 0.91840 1.59266 1.08308 1.18925 1.49975 0.93924 0.93085 0.94426 0.94285 0.93920 0.97255 0.95309 0.93461 0.89691 0.96068 0.93368 0.92391 0.92994 0.92947 0.92341 0.92486 0.90763 0.95723 0.89449 0.85229 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 7.93 37.16 0.29 -2.26 16 2 C 0.06 1.12 1.79 -67.71 -0.12 1.00 16 3 H 0.14 2.59 4.95 -51.93 -0.26 2.33 16 4 C -0.11 -2.33 4.41 -26.73 -0.12 -2.45 16 5 C 0.03 0.92 4.86 -27.89 -0.14 0.78 16 6 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 7 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.81 13.29 55.43 0.74 -27.08 16 10 Si 0.88 22.47 29.54 -169.99 -5.02 17.45 16 11 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 N -0.51 -8.62 3.94 -218.76 -0.86 -9.48 16 15 C 0.06 0.93 3.94 -3.83 -0.02 0.92 16 16 C -0.09 -1.33 2.88 -90.54 -0.26 -1.59 16 17 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 18 C -0.14 -1.79 9.20 37.16 0.34 -1.45 16 19 C -0.11 -1.36 5.29 -26.61 -0.14 -1.50 16 20 C -0.11 -1.43 5.36 -26.65 -0.14 -1.57 16 21 C 0.09 1.22 1.78 -67.73 -0.12 1.10 16 22 H 0.03 0.42 6.67 -51.93 -0.35 0.07 16 23 C 0.06 0.83 5.98 -3.83 -0.02 0.81 16 24 N -0.83 -9.89 5.58 -10.37 -0.06 -9.95 16 25 H 0.04 0.57 4.70 -51.93 -0.24 0.32 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.58 6.55 -51.92 -0.34 0.24 16 28 H 0.04 0.86 6.02 -51.93 -0.31 0.54 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.83 7.75 -51.93 -0.40 0.43 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.08 1.60 5.89 -51.93 -0.31 1.30 16 34 H 0.02 0.33 6.64 -51.93 -0.34 -0.01 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.27 8.12 -51.93 -0.42 -0.15 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.33 3.50 7.17 -39.29 -0.28 3.22 16 45 H 0.34 3.42 9.08 -39.29 -0.36 3.06 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -31.09 328.96 -9.33 -40.42 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -8.23 Total: 3.88 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -0.85 Total: -20.20 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.18 Total: -46.51 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.09 -9.33 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246571567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.368 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds