Wall clock time and date at job start Sun Mar 29 2020 23:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46757 * 2 1 4 4 C 1.53008 * 109.46984 * 240.01237 * 2 1 3 5 5 C 1.52998 * 109.47235 * 174.99786 * 4 2 1 6 6 C 1.50693 * 109.47317 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99642 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00416 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99476 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00263 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46817 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47124 * 119.99705 * 10 8 6 13 13 H 1.48498 * 109.46777 * 239.99723 * 10 8 6 14 14 N 1.46896 * 109.47536 * 120.00895 * 2 1 3 15 15 C 1.46846 * 111.00008 * 60.57432 * 14 2 1 16 16 C 1.53041 * 109.52115 * 174.16389 * 15 14 2 17 17 H 1.09002 * 109.53478 * 299.21279 * 16 15 14 18 18 C 1.52996 * 109.49987 * 179.11857 * 16 15 14 19 19 C 1.53113 * 109.27889 * 59.17839 * 16 15 14 20 20 C 1.53122 * 109.15965 * 302.34471 * 19 16 15 21 21 C 1.46844 * 110.99607 * 296.36200 * 14 2 1 22 22 H 1.09000 * 109.46213 * 65.82923 * 21 14 2 23 23 C 1.52999 * 109.46812 * 305.84585 * 21 14 2 24 24 N 1.46893 * 109.47067 * 69.16635 * 23 21 14 25 25 H 1.09000 * 109.47135 * 299.99067 * 1 2 3 26 26 H 1.08998 * 109.47620 * 59.99491 * 1 2 3 27 27 H 1.09007 * 109.47198 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46411 * 294.99782 * 4 2 1 29 29 H 1.09000 * 109.47320 * 54.99104 * 4 2 1 30 30 H 1.09002 * 109.46712 * 299.99972 * 5 4 2 31 31 H 1.08998 * 109.46790 * 59.99519 * 5 4 2 32 32 H 0.97004 * 119.99531 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46107 * 54.14655 * 15 14 2 34 34 H 1.08999 * 109.45176 * 294.16975 * 15 14 2 35 35 H 1.08996 * 109.47462 * 300.19486 * 18 16 15 36 36 H 1.09004 * 109.47388 * 60.19770 * 18 16 15 37 37 H 1.09003 * 109.46965 * 180.19486 * 18 16 15 38 38 H 1.08997 * 109.52349 * 62.25096 * 19 16 15 39 39 H 1.09004 * 109.52290 * 182.43969 * 19 16 15 40 40 H 1.09002 * 109.49864 * 177.60157 * 20 19 16 41 41 H 1.09000 * 109.50149 * 297.71263 * 20 19 16 42 42 H 1.09003 * 109.47363 * 189.17008 * 23 21 14 43 43 H 1.09003 * 109.46737 * 309.17137 * 23 21 14 44 44 H 1.00904 * 111.00214 * 56.05225 * 24 23 21 45 45 H 1.00902 * 111.00118 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2495 5 6 3.5648 -0.6130 -1.3140 6 6 4.0671 -1.3237 -2.5442 7 1 3.3686 -1.8047 -3.2130 8 6 5.4184 -1.3608 -2.8155 9 7 6.2689 -0.7755 -2.0008 10 14 6.0412 -2.2423 -4.3402 11 1 4.8912 -2.8144 -5.0855 12 1 6.7643 -1.2788 -5.2084 13 1 6.9630 -3.3350 -3.9382 14 7 2.0197 -0.6926 1.1993 15 6 1.5602 -2.0871 1.2261 16 6 2.2054 -2.8155 2.4074 17 1 3.2895 -2.8055 2.2936 18 6 1.7094 -4.2622 2.4479 19 6 1.8215 -2.1067 3.7091 20 6 2.2683 -0.6440 3.6356 21 6 1.6212 0.0215 2.4189 22 1 0.5365 -0.0115 2.5210 23 6 2.0809 1.4781 2.3302 24 7 1.2979 2.1769 1.3025 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7516 -1.7713 -1.2059 29 1 1.6052 -0.2614 -2.1371 30 1 3.8531 0.4373 -1.3574 31 1 3.9994 -1.0727 -0.4263 32 1 7.2196 -0.8013 -2.1919 33 1 1.8433 -2.5807 0.2965 34 1 0.4758 -2.1099 1.3339 35 1 0.6253 -4.2716 2.5602 36 1 1.9830 -4.7663 1.5209 37 1 2.1666 -4.7796 3.2914 38 1 0.7406 -2.1512 3.8430 39 1 2.3139 -2.5963 4.5494 40 1 1.9598 -0.1234 4.5423 41 1 3.3532 -0.5993 3.5409 42 1 1.9326 1.9653 3.2940 43 1 3.1379 1.5099 2.0658 44 1 0.3091 2.1061 1.4909 45 1 1.5826 3.1418 1.2249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246571567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:07 Heat of formation + Delta-G solvation = -29.317584 kcal Electronic energy + Delta-G solvation = -20689.079156 eV Core-core repulsion = 17932.882067 eV Total energy + Delta-G solvation = -2756.197088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90777 -36.92179 -36.01651 -34.76714 -32.78397 -31.93919 -30.16310 -27.95641 -26.99241 -25.65333 -23.92994 -23.29000 -21.70434 -20.98020 -19.83505 -18.32676 -17.48978 -16.57329 -16.37801 -15.99771 -15.56240 -15.36284 -15.06605 -14.76607 -14.49299 -14.22667 -14.06001 -13.60408 -13.48292 -13.16990 -13.15001 -12.95963 -12.74955 -12.57596 -12.41919 -12.36769 -12.26649 -11.88481 -11.58304 -11.48644 -11.37267 -11.22839 -11.06105 -10.94283 -10.72859 -10.46247 -9.10349 -8.72595 -8.11376 -6.21686 1.38585 1.39369 1.52462 2.44300 3.17550 3.20266 3.64383 3.87891 3.97843 4.07781 4.20077 4.38122 4.44175 4.47487 4.56025 4.58300 4.66654 4.71242 4.77324 4.83692 4.87589 4.91030 4.95307 4.98124 5.09473 5.12626 5.15718 5.20270 5.30300 5.33267 5.38171 5.45412 5.56113 5.60526 5.63698 5.83836 6.04038 6.07662 6.30168 6.39779 6.61872 6.64049 6.69268 6.98752 7.45845 8.99717 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.006484 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.416339 B = 4317.344745 C = 4918.717894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.070 3.930 3 H 0.133 0.867 4 C -0.097 4.097 5 C 0.051 3.949 6 C -0.542 4.542 7 H 0.050 0.950 8 C 0.000 4.000 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.278 1.278 14 N -0.532 5.532 15 C 0.062 3.938 16 C -0.093 4.093 17 H 0.048 0.952 18 C -0.139 4.139 19 C -0.103 4.103 20 C -0.112 4.112 21 C 0.089 3.911 22 H 0.044 0.956 23 C 0.070 3.930 24 N -0.845 5.845 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.039 0.961 30 H -0.023 1.023 31 H -0.002 1.002 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.345 0.655 45 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.182 1.347 13.338 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.038 4.038 3 H 0.150 0.850 4 C -0.135 4.135 5 C 0.013 3.987 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.204 1.204 14 N -0.256 5.256 15 C -0.066 4.066 16 C -0.112 4.112 17 H 0.066 0.934 18 C -0.196 4.196 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.020 4.020 22 H 0.061 0.939 23 C -0.061 4.061 24 N -0.377 5.377 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.058 0.942 30 H -0.004 1.004 31 H 0.016 0.984 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.180 0.875 12.847 17.725 hybrid contribution -0.301 0.099 -0.322 0.452 sum -12.482 0.974 12.525 17.709 Atomic orbital electron populations 1.22242 0.97379 1.00002 1.01862 1.22414 0.92584 1.01230 0.87595 0.85048 1.21653 0.96835 0.98264 0.96721 1.18688 0.91846 0.93701 0.94424 1.21854 0.92454 1.34245 1.09505 0.93218 1.25926 0.97347 0.96537 0.99915 1.70139 1.02441 1.45632 1.38853 0.85498 0.78341 0.78388 0.79403 1.18928 1.20226 1.20399 1.62008 1.60293 1.01284 1.02052 1.22078 0.96495 0.89871 0.98167 1.21167 0.99544 0.95378 0.95073 0.93361 1.21732 1.01442 0.94785 1.01683 1.21550 1.01155 0.94929 0.96449 1.21616 1.00473 0.96049 0.96853 1.21665 0.97045 0.93026 0.90272 0.93866 1.21773 0.98044 0.92962 0.93326 1.59099 1.08986 1.19716 1.49927 0.91480 0.92765 0.94685 0.94709 0.94232 1.00413 0.98351 0.93101 0.93308 0.94780 0.91797 0.93799 0.91416 0.91342 0.90810 0.89533 0.92957 0.92918 0.92726 0.83968 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 7.93 71.98 0.57 -3.90 16 2 C 0.07 2.52 1.79 44.92 0.08 2.60 16 3 H 0.13 5.00 4.95 -2.39 -0.01 4.98 16 4 C -0.10 -4.41 4.41 30.60 0.13 -4.27 16 5 C 0.05 2.88 4.86 29.85 0.15 3.03 16 6 C -0.54 -33.15 9.11 25.60 0.23 -32.92 16 7 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 8 C 0.00 0.00 5.46 84.65 0.46 0.46 16 9 N -0.93 -59.50 13.29 21.45 0.28 -59.22 16 10 Si 0.96 46.71 29.54 68.60 2.03 48.73 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 N -0.53 -18.35 3.94 -846.03 -3.34 -21.69 16 15 C 0.06 2.05 3.94 86.33 0.34 2.39 16 16 C -0.09 -2.66 2.88 -10.74 -0.03 -2.70 16 17 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 18 C -0.14 -3.32 9.20 71.98 0.66 -2.66 16 19 C -0.10 -2.32 5.29 30.67 0.16 -2.16 16 20 C -0.11 -2.63 5.36 30.65 0.16 -2.47 16 21 C 0.09 2.33 1.78 44.94 0.08 2.41 16 22 H 0.04 1.05 6.67 -2.39 -0.02 1.03 16 23 C 0.07 1.71 5.98 86.30 0.52 2.23 16 24 N -0.84 -18.87 5.58 -186.73 -1.04 -19.91 16 25 H 0.07 1.59 4.70 -2.39 -0.01 1.58 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 1.02 6.55 -2.38 -0.02 1.00 16 28 H 0.03 1.59 6.02 -2.38 -0.01 1.57 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 31 H 0.00 -0.12 7.75 -2.39 -0.02 -0.14 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.05 1.94 5.89 -2.39 -0.01 1.92 16 34 H 0.03 1.03 6.64 -2.39 -0.02 1.01 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.35 6.32 7.17 -89.69 -0.64 5.68 16 45 H 0.35 6.63 9.08 -89.69 -0.81 5.81 16 Total: -1.00 -69.51 328.96 0.96 -68.56 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.50 Total: 21.48 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.52 Total: -37.95 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -4.09 Total: -100.81 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -69.51 0.96 -68.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246571567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.238 kcal (2) G-P(sol) polarization free energy of solvation -69.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds