Wall clock time and date at job start Sun Mar 29 2020 23:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86806 * 120.00307 * 2 1 4 4 H 1.48496 * 109.46933 * 269.99992 * 3 2 1 5 5 H 1.48505 * 109.46996 * 30.00066 * 3 2 1 6 6 H 1.48494 * 109.47216 * 149.99712 * 3 2 1 7 7 C 1.38732 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99546 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.76208 * 99.99717 * 180.02562 * 9 7 2 11 11 N 1.28991 * 124.82493 * 0.02603 * 10 9 7 12 12 C 1.34618 * 117.91466 * 179.97438 * 11 10 9 13 13 C 1.41201 * 128.75939 * 180.29694 * 12 11 10 14 14 C 1.36140 * 120.57751 * 180.22933 * 13 12 11 15 15 C 1.38946 * 120.74127 * 359.44391 * 14 13 12 16 16 F 1.35104 * 120.03093 * 180.30427 * 15 14 13 17 17 C 1.37916 * 119.94517 * 0.28085 * 15 14 13 18 18 C 1.39315 * 120.03455 * 0.02562 * 17 15 14 19 19 S 1.75819 * 124.81999 * 179.97438 * 10 9 7 20 20 H 0.97001 * 119.99759 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.71259 * 359.97223 * 13 12 11 22 22 H 1.08002 * 119.63173 * 179.72902 * 14 13 12 23 23 H 1.07997 * 119.98538 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4975 2.0464 -1.4000 5 1 1.4474 2.6527 0.7001 6 1 3.5475 1.4402 0.7001 7 6 2.0095 -1.2015 0.0005 8 1 1.4694 -2.1367 0.0005 9 16 3.7715 -1.2015 0.0012 10 6 4.0774 -2.9368 0.0010 11 7 3.1624 -3.8460 -0.0001 12 6 3.5539 -5.1340 -0.0007 13 6 2.7576 -6.3000 -0.0075 14 6 3.3348 -7.5330 -0.0023 15 6 4.7175 -7.6699 -0.0017 16 9 5.2752 -8.9005 -0.0027 17 6 5.5204 -6.5484 -0.0006 18 6 4.9456 -5.2794 0.0004 19 16 5.6731 -3.6749 0.0008 20 1 -0.4850 0.8401 0.0004 21 1 1.6812 -6.2130 -0.0128 22 1 2.7110 -8.4147 -0.0032 23 1 6.5951 -6.6541 -0.0006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641412760.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:22:49 Heat of formation + Delta-G solvation = -16.079459 kcal Electronic energy + Delta-G solvation = -13290.148925 eV Core-core repulsion = 10655.520281 eV Total energy + Delta-G solvation = -2634.628643 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 254.988 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.95221 -41.08993 -37.46180 -34.82561 -32.32778 -30.46939 -28.03718 -25.98824 -24.41118 -22.61537 -20.46251 -19.37236 -18.34987 -18.00449 -17.23616 -16.86205 -16.72191 -15.97673 -15.67082 -15.06887 -14.97631 -14.59331 -14.24901 -13.71070 -13.38620 -13.20488 -13.06765 -12.76969 -12.01294 -11.90432 -11.35545 -11.25291 -11.24226 -10.52772 -10.25607 -9.26660 -8.88347 -8.59832 -6.40240 -0.79143 -0.05901 -0.02853 0.54298 0.77973 1.11604 1.30480 1.36749 1.46519 2.12016 2.31070 2.50156 2.79513 3.14795 3.31800 3.60915 3.95996 4.09374 4.37081 4.79434 4.80885 5.00580 5.09596 5.64491 5.66724 6.28291 6.62154 6.76220 8.52992 Molecular weight = 254.99amu Principal moments of inertia in cm(-1) A = 0.046716 B = 0.005667 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.218346 B = 4940.054985 C = 5529.430146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.049 3.951 3 Si 0.908 3.092 4 H -0.250 1.250 5 H -0.252 1.252 6 H -0.218 1.218 7 C -0.553 4.553 8 H 0.077 0.923 9 S 0.103 5.897 10 C 0.082 3.918 11 N -0.511 5.511 12 C 0.069 3.931 13 C -0.059 4.059 14 C -0.117 4.117 15 C 0.101 3.899 16 F -0.130 7.130 17 C -0.097 4.097 18 C -0.180 4.180 19 S 0.110 5.890 20 H 0.283 0.717 21 H 0.146 0.854 22 H 0.178 0.822 23 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.530 -10.104 0.095 15.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.159 4.159 3 Si 0.727 3.273 4 H -0.174 1.174 5 H -0.175 1.175 6 H -0.141 1.141 7 C -0.702 4.702 8 H 0.095 0.905 9 S 0.341 5.659 10 C -0.307 4.307 11 N -0.231 5.231 12 C -0.055 4.055 13 C -0.082 4.082 14 C -0.138 4.138 15 C 0.077 3.923 16 F -0.108 7.108 17 C -0.121 4.121 18 C -0.302 4.302 19 S 0.361 5.639 20 H 0.093 0.907 21 H 0.164 0.836 22 H 0.196 0.804 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.563 -8.311 0.097 15.064 hybrid contribution -1.806 -1.148 -0.029 2.141 sum 10.757 -9.459 0.068 14.324 Atomic orbital electron populations 1.69998 1.07825 1.29705 1.46252 1.25774 0.95553 1.02521 0.92061 0.86032 0.81200 0.78883 0.81227 1.17434 1.17547 1.14117 1.22721 0.89821 0.98230 1.59470 0.90490 1.82476 1.08212 0.91071 1.84137 1.29417 0.93710 1.04873 1.02679 1.66791 1.34903 0.99760 1.21677 1.19829 0.91311 0.91110 1.03263 1.20478 1.00535 0.88547 0.98609 1.20877 0.93203 0.98575 1.01141 1.17308 0.91495 0.79446 1.04089 1.91519 1.85702 1.39657 1.93946 1.20312 1.01527 0.87691 1.02540 1.23566 0.96428 0.98604 1.11629 1.84221 1.07249 0.94807 1.77587 0.90733 0.83648 0.80417 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.00 13.97 21.63 0.30 -52.70 14 2 C 0.05 2.69 5.50 84.85 0.47 3.16 14 3 Si 0.91 38.78 27.74 68.60 1.90 40.69 14 4 H -0.25 -10.26 7.11 99.48 0.71 -9.55 14 5 H -0.25 -10.21 7.11 99.48 0.71 -9.50 14 6 H -0.22 -8.54 6.74 99.48 0.67 -7.87 14 7 C -0.55 -31.49 9.89 67.94 0.67 -30.82 14 8 H 0.08 4.99 7.08 -2.91 -0.02 4.97 14 9 S 0.10 4.74 19.86 -56.49 -1.12 3.61 14 10 C 0.08 3.60 7.62 130.66 1.00 4.59 14 11 N -0.51 -23.82 9.23 -187.34 -1.73 -25.55 14 12 C 0.07 2.64 6.94 39.85 0.28 2.92 14 13 C -0.06 -1.81 10.05 22.51 0.23 -1.58 14 14 C -0.12 -2.69 9.92 21.95 0.22 -2.47 14 15 C 0.10 2.38 7.30 22.36 0.16 2.54 14 16 F -0.13 -2.83 17.27 44.97 0.78 -2.06 14 17 C -0.10 -2.47 10.05 22.45 0.23 -2.24 14 18 C -0.18 -5.91 6.53 22.94 0.15 -5.76 14 19 S 0.11 3.65 23.38 -56.49 -1.32 2.33 14 20 H 0.28 15.10 8.31 -92.71 -0.77 14.33 14 21 H 0.15 4.21 8.06 -2.91 -0.02 4.18 14 22 H 0.18 2.78 8.06 -2.91 -0.02 2.75 14 23 H 0.16 3.22 8.06 -2.91 -0.02 3.20 14 Total: -1.00 -64.25 245.74 3.43 -60.83 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.22 Total: 2.51 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 3.39 Total: -29.66 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -1.43 Total: -78.25 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 1.90 Total: 40.69 kcal Atomic # 16 Polarization: 8.39 SS G_CDS: -2.44 Total: 5.95 kcal Total: -64.25 3.43 -60.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641412760.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.747 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds