Wall clock time and date at job start Sun Mar 29 2020 23:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36228 * 117.00163 * 2 1 4 4 C 1.38667 * 122.58748 * 0.02562 * 3 2 1 5 5 C 1.33432 * 114.88996 * 179.97438 * 4 3 2 6 6 S 1.75869 * 109.65508 * 0.02562 * 5 4 3 7 7 C 1.33631 * 122.58915 * 179.97438 * 3 2 1 8 8 C 1.50698 * 125.19470 * 0.02562 * 7 3 2 9 9 N 1.46897 * 109.47118 * 89.99986 * 8 7 3 10 10 C 1.46899 * 111.00061 * 293.95047 * 9 8 7 11 11 C 1.46907 * 110.99966 * 170.00027 * 9 8 7 12 12 H 1.08997 * 109.47129 * 59.99323 * 11 9 8 13 13 C 1.53004 * 109.46739 * 299.99992 * 11 9 8 14 14 C 1.50693 * 109.47003 * 180.02562 * 11 9 8 15 15 H 1.07999 * 120.00161 * 359.97438 * 14 11 9 16 16 C 1.37886 * 119.99655 * 180.02562 * 14 11 9 17 17 N 1.31507 * 120.00000 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99714 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47297 * 59.99609 * 18 16 14 20 20 H 1.48504 * 109.46850 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47056 * 299.99721 * 18 16 14 22 22 H 1.08994 * 109.47352 * 300.00003 * 1 2 3 23 23 H 1.08998 * 109.46971 * 60.00240 * 1 2 3 24 24 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 25 25 H 1.08008 * 122.55410 * 0.02562 * 4 3 2 26 26 H 1.08000 * 125.17408 * 180.26703 * 5 4 3 27 27 H 1.09006 * 109.47026 * 209.99990 * 8 7 3 28 28 H 1.09006 * 109.47219 * 329.99533 * 8 7 3 29 29 H 1.09003 * 109.47115 * 60.00314 * 10 9 8 30 30 H 1.09000 * 109.46910 * 180.02562 * 10 9 8 31 31 H 1.08994 * 109.47129 * 300.00267 * 10 9 8 32 32 H 1.08996 * 109.47475 * 60.00134 * 13 11 9 33 33 H 1.09000 * 109.46565 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.47272 * 300.00098 * 13 11 9 35 35 H 0.97005 * 119.99833 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4097 0.0005 5 6 2.1051 3.5067 0.0010 6 16 3.8035 3.0502 0.0000 7 6 3.3774 1.3439 0.0005 8 6 4.3618 0.2028 0.0006 9 7 4.6821 -0.1676 -1.3844 10 6 3.5051 -0.7216 -2.0668 11 6 5.8088 -1.1092 -1.4303 12 1 5.5503 -2.0124 -0.8777 13 6 7.0418 -0.4601 -0.7983 14 6 6.1081 -1.4648 -2.8638 15 1 5.5198 -1.0348 -3.6609 16 6 7.1322 -2.3401 -3.1575 17 7 7.8481 -2.8640 -2.1868 18 14 7.5027 -2.7815 -4.9344 19 1 7.8554 -1.5509 -5.6871 20 1 8.6418 -3.7332 -4.9808 21 1 6.3058 -3.4110 -5.5479 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2662 2.4501 0.0014 26 1 1.7335 4.5207 0.0055 27 1 5.2728 0.5089 0.5148 28 1 3.9250 -0.6538 0.5141 29 1 2.7087 0.0226 -2.0794 30 1 3.7702 -0.9878 -3.0900 31 1 3.1631 -1.6108 -1.5374 32 1 6.8257 -0.2024 0.2385 33 1 7.8777 -1.1589 -0.8320 34 1 7.3004 0.4433 -1.3508 35 1 8.5689 -3.4794 -2.3935 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:02 Heat of formation + Delta-G solvation = 9.967127 kcal Electronic energy + Delta-G solvation = -17198.223717 eV Core-core repulsion = 14517.098161 eV Total energy + Delta-G solvation = -2681.125556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67957 -36.88639 -35.52480 -32.86520 -30.47985 -28.81959 -27.46141 -25.90516 -24.59075 -23.62518 -22.16736 -19.43316 -19.30088 -17.17680 -16.55162 -15.99297 -15.71026 -15.09859 -14.83631 -14.02073 -13.83364 -13.61360 -13.23116 -12.70258 -12.48179 -12.15048 -12.00575 -11.50640 -11.44593 -11.00826 -10.90932 -10.77619 -10.68123 -10.57091 -10.43389 -10.07223 -9.92247 -9.78004 -8.83424 -8.45022 -8.30468 -7.71974 -7.04977 -5.95389 -3.99331 1.19770 1.83885 2.16255 2.90093 3.36117 3.39907 3.43334 3.80746 4.46260 4.85218 5.11742 5.18234 5.20951 5.31650 5.40186 5.49474 5.68481 5.87825 5.94635 6.15748 6.31075 6.44869 6.58321 6.65657 6.91249 6.96478 7.11504 7.22626 7.51365 7.59865 7.79569 7.89164 8.28578 8.40442 8.67791 9.07136 9.65058 11.11457 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.005784 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.200208 B = 4839.920503 C = 5246.027556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.084 3.916 4 C -0.185 4.185 5 C -0.212 4.212 6 S 0.148 5.852 7 C -0.190 4.190 8 C 0.126 3.874 9 N -0.531 5.531 10 C 0.045 3.955 11 C 0.212 3.788 12 H -0.002 1.002 13 C -0.134 4.134 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.138 0.862 26 H 0.163 0.837 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.011 0.989 32 H 0.008 0.992 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.718 9.701 5.796 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.215 6.215 3 C 0.029 3.971 4 C -0.218 4.218 5 C -0.348 4.348 6 S 0.410 5.590 7 C -0.309 4.309 8 C -0.004 4.004 9 N -0.256 5.256 10 C -0.103 4.103 11 C 0.106 3.894 12 H 0.016 0.984 13 C -0.192 4.192 14 C -0.539 4.539 15 H 0.081 0.919 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.204 1.204 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.155 0.845 26 H 0.180 0.820 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.953 10.595 5.572 16.225 hybrid contribution -1.707 -1.571 -0.555 2.385 sum -12.660 9.024 5.017 16.336 Atomic orbital electron populations 1.22945 0.79434 1.03417 1.00589 1.86242 1.20157 1.25129 1.89951 1.17591 0.91054 0.84932 1.03543 1.20120 1.01024 0.91672 1.09010 1.25366 0.97377 1.02217 1.09864 1.84239 1.04559 0.97837 1.72320 1.23737 0.95162 0.98532 1.13442 1.20408 0.95034 0.92049 0.92891 1.62188 1.06986 1.45060 1.11370 1.22146 0.91896 0.96417 0.99864 1.19250 0.85726 0.87859 0.96557 0.98412 1.21870 1.01658 1.00589 0.95073 1.21120 1.15790 1.25301 0.91726 0.91906 1.24925 0.96044 0.96043 0.97238 1.69884 1.21057 1.31233 1.31201 0.86588 0.77692 0.78183 0.85082 1.20245 1.21393 1.20394 0.93412 0.93206 0.88688 0.84455 0.81969 0.90027 0.93953 0.93813 0.91056 0.97016 0.97360 0.89612 0.94627 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.92 101.05 1.00 1.34 16 2 O -0.30 -4.73 8.98 -20.47 -0.18 -4.91 16 3 C 0.08 1.33 5.48 -41.04 -0.23 1.11 16 4 C -0.19 -2.40 9.16 -41.10 -0.38 -2.78 16 5 C -0.21 -2.58 11.22 29.05 0.33 -2.25 16 6 S 0.15 2.15 23.32 -107.50 -2.51 -0.36 16 7 C -0.19 -3.32 5.44 -35.92 -0.20 -3.52 16 8 C 0.13 2.53 5.12 -4.98 -0.03 2.50 16 9 N -0.53 -12.19 4.61 -237.73 -1.10 -13.28 16 10 C 0.05 0.99 8.43 60.06 0.51 1.49 16 11 C 0.21 5.55 2.06 -68.86 -0.14 5.40 16 12 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 13 C -0.13 -3.35 8.76 37.16 0.33 -3.03 16 14 C -0.50 -14.06 7.88 -34.44 -0.27 -14.33 16 15 H 0.06 1.76 6.41 -52.49 -0.34 1.43 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 18 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H 0.05 0.43 7.84 -51.93 -0.41 0.02 16 23 H 0.05 0.48 7.84 -51.93 -0.41 0.07 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.14 1.41 6.91 -52.48 -0.36 1.04 16 26 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.08 1.62 5.83 -51.93 -0.30 1.32 16 28 H 0.04 0.88 7.94 -51.93 -0.41 0.47 16 29 H 0.04 0.88 5.93 -51.93 -0.31 0.57 16 30 H 0.07 1.63 6.10 -51.93 -0.32 1.31 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 33 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 293.89 15.07 4.43 4.43 Total: -1.00 -30.34 293.89 -7.66 -38.00 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.74 Total: -2.78 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 0.83 Total: -12.50 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.47 Total: -38.55 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.18 Total: -4.91 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.51 Total: -0.36 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.34 -7.66 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.964 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds