Wall clock time and date at job start Sun Mar 29 2020 23:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36228 * 117.00163 * 2 1 4 4 C 1.38667 * 122.58748 * 0.02562 * 3 2 1 5 5 C 1.33432 * 114.88996 * 179.97438 * 4 3 2 6 6 S 1.75869 * 109.65508 * 0.02562 * 5 4 3 7 7 C 1.33631 * 122.58915 * 179.97438 * 3 2 1 8 8 C 1.50698 * 125.19470 * 0.02562 * 7 3 2 9 9 N 1.46897 * 109.47118 * 89.99986 * 8 7 3 10 10 C 1.46899 * 111.00061 * 293.95047 * 9 8 7 11 11 C 1.46907 * 110.99966 * 170.00027 * 9 8 7 12 12 H 1.08997 * 109.47129 * 59.99323 * 11 9 8 13 13 C 1.53004 * 109.46739 * 299.99992 * 11 9 8 14 14 C 1.50693 * 109.47003 * 180.02562 * 11 9 8 15 15 H 1.07999 * 120.00161 * 359.97438 * 14 11 9 16 16 C 1.37886 * 119.99655 * 180.02562 * 14 11 9 17 17 N 1.31507 * 120.00000 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99714 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47297 * 59.99609 * 18 16 14 20 20 H 1.48504 * 109.46850 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47056 * 299.99721 * 18 16 14 22 22 H 1.08994 * 109.47352 * 300.00003 * 1 2 3 23 23 H 1.08998 * 109.46971 * 60.00240 * 1 2 3 24 24 H 1.09004 * 109.46802 * 180.02562 * 1 2 3 25 25 H 1.08008 * 122.55410 * 0.02562 * 4 3 2 26 26 H 1.08000 * 125.17408 * 180.26703 * 5 4 3 27 27 H 1.09006 * 109.47026 * 209.99990 * 8 7 3 28 28 H 1.09006 * 109.47219 * 329.99533 * 8 7 3 29 29 H 1.09003 * 109.47115 * 60.00314 * 10 9 8 30 30 H 1.09000 * 109.46910 * 180.02562 * 10 9 8 31 31 H 1.08994 * 109.47129 * 300.00267 * 10 9 8 32 32 H 1.08996 * 109.47475 * 60.00134 * 13 11 9 33 33 H 1.09000 * 109.46565 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.47272 * 300.00098 * 13 11 9 35 35 H 0.97005 * 119.99833 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4097 0.0005 5 6 2.1051 3.5067 0.0010 6 16 3.8035 3.0502 0.0000 7 6 3.3774 1.3439 0.0005 8 6 4.3618 0.2028 0.0006 9 7 4.6821 -0.1676 -1.3844 10 6 3.5051 -0.7216 -2.0668 11 6 5.8088 -1.1092 -1.4303 12 1 5.5503 -2.0124 -0.8777 13 6 7.0418 -0.4601 -0.7983 14 6 6.1081 -1.4648 -2.8638 15 1 5.5198 -1.0348 -3.6609 16 6 7.1322 -2.3401 -3.1575 17 7 7.8481 -2.8640 -2.1868 18 14 7.5027 -2.7815 -4.9344 19 1 7.8554 -1.5509 -5.6871 20 1 8.6418 -3.7332 -4.9808 21 1 6.3058 -3.4110 -5.5479 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2662 2.4501 0.0014 26 1 1.7335 4.5207 0.0055 27 1 5.2728 0.5089 0.5148 28 1 3.9250 -0.6538 0.5141 29 1 2.7087 0.0226 -2.0794 30 1 3.7702 -0.9878 -3.0900 31 1 3.1631 -1.6108 -1.5374 32 1 6.8257 -0.2024 0.2385 33 1 7.8777 -1.1589 -0.8320 34 1 7.3004 0.4433 -1.3508 35 1 8.5689 -3.4794 -2.3935 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:02 Heat of formation + Delta-G solvation = -9.828044 kcal Electronic energy + Delta-G solvation = -17199.082100 eV Core-core repulsion = 14517.098161 eV Total energy + Delta-G solvation = -2681.983939 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82479 -38.66343 -36.65261 -34.87446 -32.02850 -30.67016 -28.72410 -27.35182 -26.37459 -25.13513 -23.65604 -21.31654 -20.40911 -18.59422 -18.15328 -17.46578 -17.11068 -16.68142 -15.95415 -15.86468 -15.45847 -15.04136 -14.62215 -14.21924 -13.91235 -13.62037 -13.48964 -13.08563 -12.93001 -12.67600 -12.63772 -12.56789 -12.20696 -12.09552 -11.98217 -11.77267 -11.66547 -11.59662 -10.90085 -10.51904 -9.53603 -9.00600 -8.78549 -8.10204 -6.22502 0.10593 0.73239 1.09944 1.42550 1.44963 1.52515 1.79993 2.43402 2.78332 3.17340 3.48591 3.86516 4.17478 4.29158 4.41231 4.45750 4.54582 4.64814 4.68457 4.75815 4.77957 4.90116 4.94939 5.01857 5.06074 5.08862 5.23378 5.46032 5.51219 5.72151 5.77246 6.24622 6.38350 6.48807 6.70964 6.91219 7.46190 8.95681 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.005784 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.200208 B = 4839.920503 C = 5246.027556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.331 6.331 3 C 0.094 3.906 4 C -0.196 4.196 5 C -0.181 4.181 6 S 0.137 5.863 7 C -0.243 4.243 8 C 0.136 3.864 9 N -0.535 5.535 10 C 0.059 3.941 11 C 0.216 3.784 12 H -0.041 1.041 13 C -0.120 4.120 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.011 3.989 17 N -0.921 5.921 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.272 1.272 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.171 0.829 26 H 0.203 0.797 27 H 0.075 0.925 28 H 0.025 0.975 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.001 0.999 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.554 11.442 5.272 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.246 6.246 3 C 0.038 3.962 4 C -0.227 4.227 5 C -0.317 4.317 6 S 0.400 5.600 7 C -0.361 4.361 8 C 0.007 3.993 9 N -0.259 5.259 10 C -0.089 4.089 11 C 0.109 3.891 12 H -0.023 1.023 13 C -0.179 4.179 14 C -0.558 4.558 15 H 0.077 0.923 16 C -0.187 4.187 17 N -0.560 5.560 18 Si 0.787 3.213 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.197 1.197 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.125 0.875 25 H 0.188 0.812 26 H 0.220 0.780 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.812 12.341 5.056 18.493 hybrid contribution -1.270 -2.075 -0.321 2.454 sum -14.081 10.266 4.735 18.058 Atomic orbital electron populations 1.23260 0.76841 1.04896 1.02199 1.86208 1.23000 1.25723 1.89637 1.17932 0.90861 0.86067 1.01380 1.20362 1.02655 0.90404 1.09324 1.25856 0.95353 1.03898 1.06571 1.84196 1.06976 0.96012 1.72842 1.23485 0.95403 0.99083 1.18096 1.20197 0.95618 0.92815 0.90702 1.62157 1.06647 1.43541 1.13586 1.21995 0.91909 0.96453 0.98551 1.19067 0.87376 0.87231 0.95415 1.02306 1.21670 1.00330 0.99546 0.96310 1.21372 1.16139 1.25855 0.92467 0.92319 1.25731 0.95751 0.95804 1.01451 1.70016 1.21331 1.31508 1.33181 0.85553 0.77671 0.78064 0.79979 1.19609 1.20775 1.19734 0.91395 0.91831 0.87510 0.81185 0.77995 0.90634 0.95714 0.91979 0.92572 0.98057 0.95284 0.91893 0.94826 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.92 113.37 1.12 1.55 16 2 O -0.33 -10.03 8.98 -96.16 -0.86 -10.89 16 3 C 0.09 2.84 5.48 21.33 0.12 2.95 16 4 C -0.20 -4.35 9.16 21.28 0.19 -4.15 16 5 C -0.18 -3.68 11.22 66.73 0.75 -2.93 16 6 S 0.14 3.78 23.32 -56.49 -1.32 2.46 16 7 C -0.24 -8.37 5.44 24.64 0.13 -8.23 16 8 C 0.14 5.61 5.12 85.56 0.44 6.05 16 9 N -0.53 -25.18 4.61 -906.04 -4.18 -29.36 16 10 C 0.06 2.63 8.43 127.69 1.08 3.71 16 11 C 0.22 11.73 2.06 44.17 0.09 11.82 16 12 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 13 C -0.12 -6.21 8.76 71.98 0.63 -5.58 16 14 C -0.52 -29.86 7.88 25.60 0.20 -29.66 16 15 H 0.06 3.35 6.41 -2.91 -0.02 3.33 16 16 C 0.01 0.64 5.30 84.66 0.45 1.09 16 17 N -0.92 -54.42 11.32 21.45 0.24 -54.18 16 18 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H 0.07 0.99 7.84 -2.39 -0.02 0.98 16 23 H 0.06 1.01 7.84 -2.39 -0.02 0.99 16 24 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.17 2.63 6.91 -2.91 -0.02 2.61 16 26 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 27 H 0.08 3.11 5.83 -2.38 -0.01 3.09 16 28 H 0.02 1.08 7.94 -2.38 -0.02 1.07 16 29 H 0.06 2.49 5.93 -2.39 -0.01 2.48 16 30 H 0.06 2.62 6.10 -2.39 -0.01 2.61 16 31 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.03 1.32 6.20 -2.39 -0.01 1.31 16 33 H 0.06 3.53 6.07 -2.39 -0.01 3.51 16 34 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -66.80 293.89 2.20 -64.60 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 1.08 Total: 3.97 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: 5.21 Total: -23.38 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -3.94 Total: -83.54 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.86 Total: -10.89 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.32 Total: 2.46 kcal Total: -66.80 2.20 -64.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.771 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds