Wall clock time and date at job start Sun Mar 29 2020 23:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00378 * 2 1 4 4 C 1.53001 * 109.46965 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46813 * 62.03959 * 4 3 2 6 6 C 1.36941 * 119.99927 * 281.56555 * 5 4 3 7 7 H 1.07998 * 119.99942 * 349.38549 * 6 5 4 8 8 C 1.38811 * 120.00341 * 169.38676 * 6 5 4 9 9 N 1.31619 * 119.99690 * 35.35012 * 8 6 5 10 10 Si 1.86796 * 120.00282 * 215.35086 * 8 6 5 11 11 H 1.48497 * 109.47139 * 89.99900 * 10 8 6 12 12 H 1.48497 * 109.47045 * 210.00139 * 10 8 6 13 13 H 1.48498 * 109.46939 * 330.00036 * 10 8 6 14 14 C 1.46498 * 120.00354 * 101.57213 * 5 4 3 15 15 C 1.50704 * 109.46961 * 264.81771 * 14 5 4 16 16 C 1.38419 * 122.53967 * 262.41082 * 15 14 5 17 17 C 1.33390 * 114.92308 * 179.76156 * 16 15 14 18 18 S 1.75886 * 109.58919 * 0.47267 * 17 16 15 19 19 C 1.33389 * 122.54138 * 82.69166 * 15 14 5 20 20 C 1.50698 * 125.20051 * 359.97438 * 19 15 14 21 21 H 1.09000 * 109.47381 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47335 * 299.99975 * 1 2 3 23 23 H 1.09003 * 109.46972 * 59.99664 * 1 2 3 24 24 H 1.09004 * 109.46573 * 60.00149 * 3 2 1 25 25 H 1.08993 * 109.47347 * 300.00283 * 3 2 1 26 26 H 1.08995 * 109.47793 * 302.03174 * 4 3 2 27 27 H 1.08998 * 109.46905 * 182.03386 * 4 3 2 28 28 H 0.96998 * 120.00071 * 178.92781 * 9 8 6 29 29 H 1.09001 * 109.47465 * 24.81710 * 14 5 4 30 30 H 1.08994 * 109.47602 * 144.82170 * 14 5 4 31 31 H 1.08001 * 122.54394 * 359.97438 * 16 15 14 32 32 H 1.07998 * 125.21035 * 180.20963 * 17 16 15 33 33 H 1.09004 * 109.47385 * 98.65246 * 20 19 15 34 34 H 1.08993 * 109.47467 * 218.65236 * 20 19 15 35 35 H 1.09004 * 109.47455 * 338.65428 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9715 0.5001 -1.2190 6 6 3.8676 -0.8621 -1.3143 7 1 3.6286 -1.4479 -0.4390 8 6 4.0693 -1.4899 -2.5357 9 7 4.9671 -1.0210 -3.3763 10 14 3.0667 -3.0002 -2.9865 11 1 1.8273 -2.5801 -3.6884 12 1 3.8672 -3.8777 -3.8778 13 1 2.7086 -3.7432 -1.7517 14 6 4.5189 1.2728 -2.3368 15 6 3.4230 1.5666 -3.3287 16 6 3.2256 0.8050 -4.4675 17 6 2.2089 1.1971 -5.2368 18 16 1.4415 2.6105 -4.5246 19 6 2.5730 2.5837 -3.1785 20 6 2.5808 3.5600 -2.0305 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8463 0.8901 25 1 1.6887 1.8464 -0.8899 26 1 3.8544 0.6126 0.8720 27 1 3.9788 2.1795 0.0371 28 1 5.1191 -1.4688 -4.2232 29 1 4.9316 2.2099 -1.9632 30 1 5.3060 0.6981 -2.8249 31 1 3.8455 -0.0447 -4.7129 32 1 1.9061 0.7223 -6.1583 33 1 3.0930 4.4732 -2.3336 34 1 1.5551 3.7957 -1.7471 35 1 3.1001 3.1172 -1.1805 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453604337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:42 Heat of formation + Delta-G solvation = 14.848111 kcal Electronic energy + Delta-G solvation = -18203.281626 eV Core-core repulsion = 15522.367725 eV Total energy + Delta-G solvation = -2680.913900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78082 -38.42618 -36.44933 -33.95052 -32.32783 -30.70577 -28.55134 -27.25037 -26.13675 -24.76094 -22.98144 -22.14162 -19.10039 -18.67732 -17.82164 -17.26300 -16.84815 -16.33290 -16.09617 -15.66041 -15.23967 -14.95591 -14.45150 -14.12388 -13.80250 -13.59632 -13.31496 -13.01960 -12.89408 -12.65903 -12.56353 -12.47226 -12.18411 -12.00812 -11.88330 -11.69378 -11.61269 -11.32661 -10.35437 -10.27629 -9.19436 -8.93066 -8.70073 -7.69736 -4.96953 0.34416 1.00936 1.27137 1.43985 1.51094 1.55907 2.17896 2.60416 3.14147 3.33005 3.89289 4.21069 4.37305 4.40749 4.46320 4.52952 4.62093 4.65942 4.66805 4.75481 4.81525 4.85382 4.90101 5.03393 5.22632 5.26787 5.38092 5.55431 5.79272 5.84182 5.92848 6.14907 6.53801 6.64946 7.30849 8.02514 8.38431 9.19208 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.012722 C = 0.009729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.336169 B = 2200.347843 C = 2877.414956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.036 3.964 4 C 0.143 3.857 5 N -0.589 5.589 6 C -0.212 4.212 7 H 0.064 0.936 8 C -0.026 4.026 9 N -0.891 5.891 10 Si 0.905 3.095 11 H -0.305 1.305 12 H -0.300 1.300 13 H -0.284 1.284 14 C 0.181 3.819 15 C -0.094 4.094 16 C -0.117 4.117 17 C -0.252 4.252 18 S 0.044 5.956 19 C -0.190 4.190 20 C -0.082 4.082 21 H 0.078 0.922 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.248 0.752 29 H 0.040 0.960 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 9.587 2.667 11.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.043 4.043 4 C 0.017 3.983 5 N -0.309 5.309 6 C -0.342 4.342 7 H 0.082 0.918 8 C -0.221 4.221 9 N -0.540 5.540 10 Si 0.737 3.263 11 H -0.234 1.234 12 H -0.228 1.228 13 H -0.209 1.209 14 C 0.053 3.947 15 C -0.108 4.108 16 C -0.147 4.147 17 C -0.387 4.387 18 S 0.306 5.694 19 C -0.308 4.308 20 C -0.140 4.140 21 H 0.097 0.903 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.150 10.253 2.141 12.682 hybrid contribution 0.106 -2.049 -0.353 2.082 sum -7.044 8.204 1.788 10.960 Atomic orbital electron populations 1.22749 0.81834 1.02367 0.99780 1.88064 1.19378 1.29039 1.95234 1.23602 0.96664 0.84360 0.99633 1.21174 0.91319 0.96946 0.88904 1.44163 1.71234 1.02585 1.12883 1.19112 1.37816 0.83583 0.93701 0.91840 1.24722 1.00619 0.99523 0.97222 1.69917 1.30869 1.41749 1.11474 0.86136 0.80921 0.81735 0.77459 1.23362 1.22796 1.20922 1.20303 0.94071 0.93877 0.86455 1.19791 1.00477 0.93645 0.96885 1.20987 0.98139 1.01028 0.94561 1.25637 1.03470 1.03332 1.06227 1.83355 1.36965 1.29636 1.19417 1.24492 1.00609 1.03745 1.01912 1.20604 1.02806 0.96413 0.94174 0.90340 0.92532 0.95325 0.92431 0.93269 0.94022 0.89220 0.94014 0.94214 0.87235 0.84250 0.82019 0.89950 0.90878 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.40 -16.18 9.46 -148.98 -1.41 -17.59 16 3 C 0.04 1.24 5.71 71.98 0.41 1.65 16 4 C 0.14 5.30 5.45 86.38 0.47 5.77 16 5 N -0.59 -27.34 2.56 -706.36 -1.81 -29.15 16 6 C -0.21 -11.35 8.47 84.03 0.71 -10.64 16 7 H 0.06 3.55 7.98 -2.91 -0.02 3.53 16 8 C -0.03 -1.41 4.24 84.86 0.36 -1.05 16 9 N -0.89 -48.21 7.64 21.65 0.17 -48.04 16 10 Si 0.91 45.94 29.67 68.60 2.04 47.97 16 11 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 12 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 13 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 14 C 0.18 8.16 4.90 85.63 0.42 8.58 16 15 C -0.09 -4.09 5.20 -20.92 -0.11 -4.20 16 16 C -0.12 -5.32 8.80 21.22 0.19 -5.13 16 17 C -0.25 -10.03 11.23 66.72 0.75 -9.28 16 18 S 0.04 1.53 23.33 -56.49 -1.32 0.21 16 19 C -0.19 -7.00 5.87 24.59 0.14 -6.86 16 20 C -0.08 -2.31 8.23 71.24 0.59 -1.72 16 21 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 25 H 0.05 1.74 4.74 -2.39 -0.01 1.73 16 26 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 27 H 0.09 2.75 6.25 -2.39 -0.01 2.73 16 28 H 0.25 13.24 7.88 -92.71 -0.73 12.51 16 29 H 0.04 1.58 7.08 -2.39 -0.02 1.57 16 30 H 0.11 5.72 5.11 -2.39 -0.01 5.71 16 31 H 0.14 7.02 5.08 -2.91 -0.01 7.01 16 32 H 0.16 5.67 8.06 -2.91 -0.02 5.65 16 33 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.07 1.82 7.96 -2.39 -0.02 1.80 16 35 H 0.08 2.38 3.19 -2.38 -0.01 2.37 16 Total: -1.00 -60.36 285.26 3.97 -56.39 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.13 Total: 10.93 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 5.18 Total: -20.71 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -1.64 Total: -77.19 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -1.41 Total: -17.59 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.04 Total: 47.97 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.32 Total: 0.21 kcal Total: -60.36 3.97 -56.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453604337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.236 kcal (2) G-P(sol) polarization free energy of solvation -60.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds