Wall clock time and date at job start Sun Mar 29 2020 23:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47453 * 2 1 4 4 N 1.46905 * 109.46980 * 179.59966 * 3 2 1 5 5 C 1.46891 * 111.00051 * 298.08026 * 4 3 2 6 6 C 1.50705 * 109.47351 * 292.95262 * 5 4 3 7 7 H 1.08003 * 119.99952 * 354.96114 * 6 5 4 8 8 C 1.37873 * 120.00331 * 174.95830 * 6 5 4 9 9 N 1.31516 * 120.00100 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00110 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47130 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47214 * 120.00200 * 10 8 6 13 13 H 1.48508 * 109.46868 * 239.99998 * 10 8 6 14 14 C 1.46899 * 111.00123 * 62.03749 * 4 3 2 15 15 C 1.50701 * 109.47204 * 66.04369 * 14 4 3 16 16 O 1.34636 * 125.85447 * 270.33423 * 15 14 4 17 17 C 1.34268 * 109.53655 * 180.15674 * 16 15 14 18 18 C 1.34478 * 108.57665 * 359.55623 * 17 16 15 19 19 C 1.35027 * 125.85497 * 90.00054 * 15 14 4 20 20 S 1.76207 * 126.63610 * 0.02562 * 19 15 14 21 21 H 1.08995 * 109.47416 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46794 * 300.00294 * 1 2 3 23 23 H 1.09000 * 109.46771 * 60.00125 * 1 2 3 24 24 H 1.08997 * 109.47308 * 239.99652 * 2 1 3 25 25 H 1.09000 * 109.46771 * 119.99875 * 2 1 3 26 26 H 1.08997 * 109.47493 * 59.59497 * 3 2 1 27 27 H 1.09002 * 109.46933 * 299.59773 * 3 2 1 28 28 H 1.09003 * 109.46951 * 52.95213 * 5 4 3 29 29 H 1.09000 * 109.47649 * 172.95080 * 5 4 3 30 30 H 0.96998 * 120.00684 * 179.97438 * 9 8 6 31 31 H 1.09002 * 109.47048 * 306.04385 * 14 4 3 32 32 H 1.09001 * 109.47209 * 186.04245 * 14 4 3 33 33 H 1.07990 * 125.70859 * 179.82737 * 17 16 15 34 34 H 1.08001 * 126.56566 * 180.26929 * 18 17 16 35 35 H 1.34495 * 102.99800 * 269.97656 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4423 0.0097 5 6 4.0275 0.7996 1.2245 6 6 3.6824 1.6425 2.4252 7 1 3.2052 2.6022 2.2921 8 6 3.9758 1.1886 3.6936 9 7 4.5563 0.0197 3.8558 10 14 3.5474 2.2331 5.1818 11 1 2.9050 3.4945 4.7329 12 1 2.6111 1.4850 6.0587 13 1 4.7861 2.5504 5.9369 14 6 4.0435 0.7964 -1.1966 15 6 3.6930 1.6236 -2.4066 16 8 2.5763 1.5016 -3.1487 17 6 2.6008 2.3984 -4.1476 18 6 3.7341 3.1159 -4.0515 19 6 4.4420 2.6185 -2.9285 20 16 5.9982 3.1881 -2.3296 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6709 1.9584 0.8863 27 1 1.6827 1.9542 -0.8936 28 1 3.5789 -0.1879 1.3328 29 1 5.1104 0.7004 1.1494 30 1 4.7631 -0.2996 4.7481 31 1 3.6098 -0.1984 -1.2985 32 1 5.1273 0.7136 -1.1147 33 1 1.8361 2.5255 -4.8995 34 1 4.0455 3.9175 -4.7048 35 1 5.6524 4.1516 -1.4574 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237190851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:49 Heat of formation + Delta-G solvation = 15.993427 kcal Electronic energy + Delta-G solvation = -17206.189924 eV Core-core repulsion = 14525.325688 eV Total energy + Delta-G solvation = -2680.864236 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.103 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.42254 -37.53313 -33.04945 -32.84241 -32.24184 -30.20786 -27.10067 -26.04627 -23.89050 -22.16537 -21.86766 -20.85826 -19.42906 -17.64598 -16.52611 -16.15733 -16.03856 -15.10669 -14.73774 -14.62742 -14.18811 -13.53827 -13.30887 -13.13354 -12.73302 -12.67430 -12.14463 -11.66586 -11.34441 -11.20033 -11.08935 -11.01684 -10.83497 -10.71621 -10.54705 -10.01101 -9.82977 -9.56301 -9.27835 -8.48472 -8.34150 -7.77656 -7.30007 -6.06379 -4.07427 1.62643 2.01162 2.47411 3.10074 3.28129 3.36045 3.40152 3.40529 4.39658 4.79958 5.01652 5.04111 5.29518 5.37035 5.49191 5.53487 5.77184 5.81148 5.84197 5.97204 6.05135 6.18410 6.29965 6.38419 6.43624 6.47606 6.67663 6.89146 7.15221 7.23547 7.35157 7.74129 7.99875 8.09412 8.45430 8.99845 9.56675 11.04222 Molecular weight = 255.10amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.006732 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.401220 B = 4158.223130 C = 5037.844131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.162 4.162 3 C 0.064 3.936 4 N -0.529 5.529 5 C 0.189 3.811 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.116 3.884 15 C 0.082 3.918 16 O -0.171 6.171 17 C -0.054 4.054 18 C -0.180 4.180 19 C -0.195 4.195 20 S -0.087 6.087 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.008 0.992 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.202 0.798 34 H 0.151 0.849 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 2.522 -13.928 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.201 4.201 3 C -0.064 4.064 4 N -0.253 5.253 5 C 0.065 3.935 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.012 4.012 15 C 0.027 3.973 16 O -0.066 6.066 17 C -0.122 4.122 18 C -0.202 4.202 19 C -0.309 4.309 20 S 0.068 5.932 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.218 0.782 34 H 0.169 0.831 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.784 2.828 -13.541 14.110 hybrid contribution -1.709 0.316 1.033 2.022 sum -4.493 3.144 -12.508 13.657 Atomic orbital electron populations 1.21629 0.96340 1.00751 1.01196 1.22146 0.95811 1.00007 1.02147 1.22089 0.88092 0.94851 1.01385 1.62430 1.06812 1.54462 1.01588 1.19836 0.95437 0.93550 0.84646 1.21119 1.39197 1.04126 0.89897 0.92009 1.24949 0.95375 0.95126 0.98973 1.69955 1.42341 1.18791 1.22545 0.86484 0.78103 0.80406 0.82689 1.19781 1.21072 1.20983 1.20834 1.01845 0.93370 0.85179 1.23286 0.83653 0.97093 0.93267 1.84180 1.38251 1.49788 1.34368 1.23882 1.00948 0.93359 0.94003 1.21932 0.95434 1.03088 0.99744 1.21233 1.02369 1.04330 1.02981 1.85329 1.04438 1.49354 1.54053 0.93510 0.92753 0.93517 0.92985 0.90411 0.89876 0.93190 0.97468 0.95160 0.92931 0.93083 0.87064 0.78173 0.83125 0.96037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.16 -2.89 5.28 -26.73 -0.14 -3.03 16 3 C 0.06 1.25 4.99 -3.82 -0.02 1.23 16 4 N -0.53 -11.11 4.69 -237.52 -1.11 -12.23 16 5 C 0.19 4.71 4.53 -4.98 -0.02 4.69 16 6 C -0.50 -13.80 8.40 -34.44 -0.29 -14.09 16 7 H 0.06 1.71 7.37 -52.48 -0.39 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 10 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.12 2.09 5.09 -4.98 -0.03 2.06 16 15 C 0.08 1.37 5.93 -35.45 -0.21 1.16 16 16 O -0.17 -2.60 9.98 4.89 0.05 -2.56 16 17 C -0.05 -0.65 12.08 29.40 0.36 -0.30 16 18 C -0.18 -2.38 10.90 -39.56 -0.43 -2.82 16 19 C -0.19 -3.12 6.43 -39.38 -0.25 -3.37 16 20 S -0.09 -1.37 25.64 -107.50 -2.76 -4.12 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.88 6.34 -51.93 -0.33 0.55 16 25 H 0.08 1.60 6.28 -51.93 -0.33 1.27 16 26 H 0.08 1.76 6.98 -51.93 -0.36 1.40 16 27 H 0.05 0.92 6.69 -51.93 -0.35 0.57 16 28 H 0.01 0.20 6.01 -51.93 -0.31 -0.11 16 29 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.05 0.89 6.07 -51.93 -0.32 0.57 16 32 H 0.11 2.00 7.58 -51.93 -0.39 1.61 16 33 H 0.20 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.08 1.25 9.07 97.61 0.89 2.14 16 LS Contribution 302.58 15.07 4.56 4.56 Total: -1.00 -29.14 302.58 -7.86 -37.00 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.55 Total: 0.93 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -0.77 Total: -14.72 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.38 Total: -37.51 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: 0.05 Total: -2.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.76 Total: -4.12 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.14 -7.86 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237190851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.994 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds