Wall clock time and date at job start Sun Mar 29 2020 23:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47057 * 175.53410 * 3 2 1 5 5 C 1.50702 * 109.47036 * 55.53408 * 3 2 1 6 6 H 1.08001 * 119.99442 * 239.99526 * 5 3 2 7 7 C 1.37873 * 120.00183 * 60.00002 * 5 3 2 8 8 N 1.31514 * 119.99949 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47261 * 270.00294 * 9 7 5 11 11 H 1.48503 * 109.47007 * 30.00144 * 9 7 5 12 12 H 1.48494 * 109.47259 * 149.99760 * 9 7 5 13 13 N 1.46902 * 109.47112 * 295.53278 * 3 2 1 14 14 C 1.46898 * 110.99607 * 273.90721 * 13 3 2 15 15 C 1.50703 * 109.46670 * 176.24598 * 14 13 3 16 16 C 1.38260 * 119.96428 * 90.00352 * 15 14 13 17 17 C 1.38210 * 120.07243 * 179.97438 * 16 15 14 18 18 C 1.38412 * 120.00163 * 0.02562 * 17 16 15 19 19 F 1.35091 * 120.03956 * 179.97438 * 18 17 16 20 20 C 1.38654 * 119.92634 * 0.02562 * 18 17 16 21 21 F 1.35095 * 120.03573 * 180.02562 * 20 18 17 22 22 C 1.38216 * 119.96611 * 269.72290 * 15 14 13 23 23 H 1.09008 * 109.46869 * 305.26529 * 1 2 3 24 24 H 1.08998 * 109.46967 * 65.25941 * 1 2 3 25 25 H 1.08998 * 109.47469 * 185.26379 * 1 2 3 26 26 H 1.08994 * 109.46949 * 239.99850 * 2 1 3 27 27 H 1.09003 * 109.46783 * 119.99538 * 2 1 3 28 28 H 0.97003 * 120.00072 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99769 * 37.86112 * 13 3 2 30 30 H 1.08994 * 109.47388 * 296.24242 * 14 13 3 31 31 H 1.09006 * 109.47439 * 56.25284 * 14 13 3 32 32 H 1.08005 * 119.96506 * 359.97328 * 16 15 14 33 33 H 1.08004 * 120.00376 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.99665 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4494 2.1841 1.1714 6 1 0.8384 3.0588 1.0042 7 6 1.6892 1.7461 2.4565 8 7 1.1741 2.3936 3.4788 9 14 2.7456 0.2329 2.7457 10 1 1.8844 -0.9768 2.7596 11 1 3.7486 0.1140 1.6571 12 1 3.4437 0.3585 4.0503 13 7 1.6404 2.1032 -1.2497 14 6 2.6193 1.8497 -2.3154 15 6 2.1311 2.4638 -3.6022 16 6 2.4701 3.7665 -3.9179 17 6 2.0241 4.3317 -5.0976 18 6 1.2366 3.5937 -5.9643 19 9 0.7998 4.1456 -7.1174 20 6 0.8958 2.2877 -5.6472 21 9 0.1277 1.5652 -6.4917 22 6 1.3497 1.7222 -4.4682 23 1 -0.3633 0.5934 0.8391 24 1 -0.3633 0.4301 -0.9333 25 1 -0.3634 -1.0233 0.0943 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3431 2.0856 4.3830 29 1 0.7157 1.8142 -1.5318 30 1 3.5769 2.2925 -2.0419 31 1 2.7408 0.7747 -2.4491 32 1 3.0842 4.3430 -3.2419 33 1 2.2893 5.3495 -5.3429 34 1 1.0890 0.7035 -4.2223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049577708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:34 Heat of formation + Delta-G solvation = -64.723819 kcal Electronic energy + Delta-G solvation = -18481.561270 eV Core-core repulsion = 15243.356486 eV Total energy + Delta-G solvation = -3238.204785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 255.113 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.50205 -48.58063 -39.24441 -36.80583 -33.16352 -31.69729 -30.88003 -29.77617 -26.99166 -24.66909 -23.25567 -23.25048 -21.50986 -19.62566 -17.99132 -17.21994 -17.07145 -16.36363 -16.33251 -15.27431 -15.00395 -14.95266 -14.54027 -14.34806 -13.94421 -13.81310 -13.32408 -13.03752 -12.63438 -12.50199 -12.26194 -11.96256 -11.64143 -11.38034 -11.03682 -10.79362 -10.59459 -10.47306 -9.93731 -9.46099 -9.20061 -9.14059 -8.67764 -8.56964 -7.53101 -6.08055 -4.04569 0.86854 0.94588 3.22746 3.30606 3.31327 3.35168 3.72797 4.26285 4.36826 4.47167 4.66520 4.95698 5.07503 5.16282 5.22608 5.56646 5.66786 5.71796 5.82790 5.89807 5.91801 5.98755 6.00517 6.12306 6.42676 6.48463 6.69151 6.71670 6.74582 6.91679 7.22325 7.64785 7.80699 8.19603 8.64079 9.03470 9.54267 11.05222 Molecular weight = 255.11amu Principal moments of inertia in cm(-1) A = 0.037637 B = 0.004700 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.768221 B = 5956.359193 C = 6242.255116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.160 4.160 3 C 0.185 3.815 4 H 0.035 0.965 5 C -0.491 4.491 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.297 1.297 13 N -0.665 5.665 14 C 0.090 3.910 15 C -0.050 4.050 16 C -0.078 4.078 17 C -0.126 4.126 18 C 0.057 3.943 19 F -0.134 7.134 20 C 0.065 3.935 21 F -0.133 7.133 22 C -0.124 4.124 23 H 0.082 0.918 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.083 0.917 31 H 0.034 0.966 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 -0.853 -16.010 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.076 3.924 4 H 0.053 0.947 5 C -0.530 4.530 6 H 0.100 0.900 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.224 1.224 13 N -0.296 5.296 14 C -0.039 4.039 15 C -0.051 4.051 16 C -0.096 4.096 17 C -0.145 4.145 18 C 0.036 3.964 19 F -0.113 7.113 20 C 0.045 3.955 21 F -0.112 7.112 22 C -0.143 4.143 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.722 -0.243 -15.697 15.934 hybrid contribution 0.076 -1.936 -0.308 1.962 sum 2.799 -2.180 -16.005 16.393 Atomic orbital electron populations 1.21658 0.95732 0.99750 1.02472 1.22507 0.97325 1.01009 0.99031 1.19737 0.96044 0.88220 0.88354 0.94730 1.20864 1.31430 1.12806 0.87891 0.89970 1.24888 0.95535 0.96590 0.96117 1.69875 1.45034 1.40226 0.98676 0.86977 0.81115 0.83907 0.76911 1.20640 1.19540 1.22415 1.60793 1.03917 1.62627 1.02304 1.21014 0.97621 0.97325 0.87932 1.19970 0.95537 0.93935 0.95624 1.21078 0.98895 0.94437 0.95215 1.21101 0.98280 1.00800 0.94303 1.17684 1.01805 0.91476 0.85390 1.91501 1.88082 1.85302 1.46392 1.17632 0.97417 0.89284 0.91188 1.91510 1.72870 1.77075 1.69699 1.21027 0.99229 1.01628 0.92447 0.89959 0.94109 0.94994 0.94874 0.93158 0.92666 0.84699 0.89912 0.94762 0.83764 0.83786 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.40 37.16 0.35 -2.30 16 2 C -0.16 -3.22 5.23 -26.73 -0.14 -3.35 16 3 C 0.19 4.04 1.92 -68.86 -0.13 3.90 16 4 H 0.03 0.79 6.89 -51.93 -0.36 0.43 16 5 C -0.49 -13.00 7.86 -34.44 -0.27 -13.27 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 8 N -0.90 -26.64 13.96 55.43 0.77 -25.86 16 9 Si 0.88 21.08 24.33 -169.99 -4.14 16.94 16 10 H -0.28 -6.56 6.91 56.52 0.39 -6.17 16 11 H -0.27 -6.16 6.53 56.52 0.37 -5.79 16 12 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.67 -12.29 6.25 -109.22 -0.68 -12.98 16 14 C 0.09 1.32 5.60 -4.98 -0.03 1.30 16 15 C -0.05 -0.64 5.35 -104.62 -0.56 -1.20 16 16 C -0.08 -0.90 9.70 -39.58 -0.38 -1.28 16 17 C -0.13 -1.38 10.02 -39.53 -0.40 -1.77 16 18 C 0.06 0.71 7.31 -39.36 -0.29 0.43 16 19 F -0.13 -1.77 17.18 2.25 0.04 -1.73 16 20 C 0.06 0.85 7.31 -39.36 -0.29 0.56 16 21 F -0.13 -1.83 17.18 2.25 0.04 -1.79 16 22 C -0.12 -1.54 9.68 -39.52 -0.38 -1.92 16 23 H 0.08 1.81 6.89 -51.92 -0.36 1.46 16 24 H 0.04 0.69 6.61 -51.93 -0.34 0.34 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 27 H 0.05 1.09 3.39 -51.93 -0.18 0.92 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.33 5.96 6.54 -39.29 -0.26 5.70 16 30 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.03 0.48 7.32 -51.93 -0.38 0.10 16 32 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 286.07 15.07 4.31 4.31 Total: -1.00 -28.61 286.07 -6.24 -34.85 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.97 Total: 3.34 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -2.62 Total: -17.08 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.09 Total: -38.84 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.14 Total: 16.94 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.61 -6.24 -34.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049577708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.869 kcal (2) G-P(sol) polarization free energy of solvation -28.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds