Wall clock time and date at job start Sun Mar 29 2020 23:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47057 * 175.53410 * 3 2 1 5 5 C 1.50702 * 109.47036 * 55.53408 * 3 2 1 6 6 H 1.08001 * 119.99442 * 239.99526 * 5 3 2 7 7 C 1.37873 * 120.00183 * 60.00002 * 5 3 2 8 8 N 1.31514 * 119.99949 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47261 * 270.00294 * 9 7 5 11 11 H 1.48503 * 109.47007 * 30.00144 * 9 7 5 12 12 H 1.48494 * 109.47259 * 149.99760 * 9 7 5 13 13 N 1.46902 * 109.47112 * 295.53278 * 3 2 1 14 14 C 1.46898 * 110.99607 * 273.90721 * 13 3 2 15 15 C 1.50703 * 109.46670 * 176.24598 * 14 13 3 16 16 C 1.38260 * 119.96428 * 90.00352 * 15 14 13 17 17 C 1.38210 * 120.07243 * 179.97438 * 16 15 14 18 18 C 1.38412 * 120.00163 * 0.02562 * 17 16 15 19 19 F 1.35091 * 120.03956 * 179.97438 * 18 17 16 20 20 C 1.38654 * 119.92634 * 0.02562 * 18 17 16 21 21 F 1.35095 * 120.03573 * 180.02562 * 20 18 17 22 22 C 1.38216 * 119.96611 * 269.72290 * 15 14 13 23 23 H 1.09008 * 109.46869 * 305.26529 * 1 2 3 24 24 H 1.08998 * 109.46967 * 65.25941 * 1 2 3 25 25 H 1.08998 * 109.47469 * 185.26379 * 1 2 3 26 26 H 1.08994 * 109.46949 * 239.99850 * 2 1 3 27 27 H 1.09003 * 109.46783 * 119.99538 * 2 1 3 28 28 H 0.97003 * 120.00072 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99769 * 37.86112 * 13 3 2 30 30 H 1.08994 * 109.47388 * 296.24242 * 14 13 3 31 31 H 1.09006 * 109.47439 * 56.25284 * 14 13 3 32 32 H 1.08005 * 119.96506 * 359.97328 * 16 15 14 33 33 H 1.08004 * 120.00376 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.99665 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4494 2.1841 1.1714 6 1 0.8384 3.0588 1.0042 7 6 1.6892 1.7461 2.4565 8 7 1.1741 2.3936 3.4788 9 14 2.7456 0.2329 2.7457 10 1 1.8844 -0.9768 2.7596 11 1 3.7486 0.1140 1.6571 12 1 3.4437 0.3585 4.0503 13 7 1.6404 2.1032 -1.2497 14 6 2.6193 1.8497 -2.3154 15 6 2.1311 2.4638 -3.6022 16 6 2.4701 3.7665 -3.9179 17 6 2.0241 4.3317 -5.0976 18 6 1.2366 3.5937 -5.9643 19 9 0.7998 4.1456 -7.1174 20 6 0.8958 2.2877 -5.6472 21 9 0.1277 1.5652 -6.4917 22 6 1.3497 1.7222 -4.4682 23 1 -0.3633 0.5934 0.8391 24 1 -0.3633 0.4301 -0.9333 25 1 -0.3634 -1.0233 0.0943 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3431 2.0856 4.3830 29 1 0.7157 1.8142 -1.5318 30 1 3.5769 2.2925 -2.0419 31 1 2.7408 0.7747 -2.4491 32 1 3.0842 4.3430 -3.2419 33 1 2.2893 5.3495 -5.3429 34 1 1.0890 0.7035 -4.2223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049577708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:34 Heat of formation + Delta-G solvation = -82.627378 kcal Electronic energy + Delta-G solvation = -18482.337627 eV Core-core repulsion = 15243.356486 eV Total energy + Delta-G solvation = -3238.981141 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 255.113 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.50454 -49.58864 -40.25183 -38.32858 -34.73408 -33.44264 -31.83503 -31.01638 -28.71724 -25.96828 -24.96905 -24.19257 -22.57287 -21.32680 -19.01210 -18.53637 -18.14617 -17.88161 -17.34660 -17.00172 -16.38268 -16.01791 -15.54507 -15.51797 -15.31451 -14.91858 -14.90711 -14.54866 -14.18485 -13.95184 -13.47819 -13.13942 -12.88821 -12.68661 -12.48272 -12.39191 -12.18848 -12.05260 -11.64487 -11.23329 -11.08426 -10.64959 -10.07078 -9.67567 -8.97941 -8.19986 -6.19628 -0.11002 0.03174 1.34014 1.38279 1.47480 2.35222 2.37309 2.78624 3.15381 3.28468 3.50683 3.66873 3.82190 4.04157 4.16461 4.28990 4.34121 4.47451 4.54657 4.73006 4.77141 4.88590 4.92522 4.96889 5.07848 5.09463 5.18373 5.31879 5.47650 5.60698 5.76004 5.76585 6.06324 6.72339 6.75273 6.86902 7.43729 8.97366 Molecular weight = 255.11amu Principal moments of inertia in cm(-1) A = 0.037637 B = 0.004700 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.768221 B = 5956.359193 C = 6242.255116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C 0.190 3.810 4 H 0.033 0.967 5 C -0.484 4.484 6 H 0.036 0.964 7 C 0.013 3.987 8 N -0.953 5.953 9 Si 0.941 3.059 10 H -0.270 1.270 11 H -0.246 1.246 12 H -0.305 1.305 13 N -0.678 5.678 14 C 0.094 3.906 15 C -0.058 4.058 16 C -0.076 4.076 17 C -0.117 4.117 18 C 0.048 3.952 19 F -0.140 7.140 20 C 0.050 3.950 21 F -0.141 7.141 22 C -0.120 4.120 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.262 0.738 29 H 0.337 0.663 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.157 0.843 33 H 0.171 0.829 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -2.079 -17.695 18.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.197 4.197 3 C 0.080 3.920 4 H 0.051 0.949 5 C -0.523 4.523 6 H 0.054 0.946 7 C -0.183 4.183 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.197 1.197 11 H -0.170 1.170 12 H -0.233 1.233 13 N -0.309 5.309 14 C -0.035 4.035 15 C -0.059 4.059 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.028 3.972 19 F -0.119 7.119 20 C 0.030 3.970 21 F -0.119 7.119 22 C -0.139 4.139 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.175 0.825 33 H 0.188 0.812 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.881 -1.474 -17.426 17.914 hybrid contribution -0.332 -1.439 0.127 1.482 sum 3.548 -2.913 -17.299 17.898 Atomic orbital electron populations 1.21587 0.95291 1.00542 1.01830 1.22441 0.97764 0.99514 1.00023 1.19490 0.95340 0.89012 0.88120 0.94919 1.21106 1.29856 1.11389 0.89914 0.94580 1.25665 0.97066 0.99718 0.95876 1.70042 1.47578 1.42634 0.99180 0.85980 0.79885 0.80317 0.76922 1.19679 1.17023 1.23277 1.60594 1.05008 1.62776 1.02522 1.21007 0.96657 0.98473 0.87320 1.19845 0.96396 0.94536 0.95095 1.21283 0.98590 0.94113 0.95510 1.21337 0.97048 1.01740 0.93402 1.17929 1.02178 0.91609 0.85530 1.91488 1.88222 1.85359 1.46782 1.17798 0.98001 0.89627 0.91566 1.91488 1.73176 1.77298 1.69978 1.21102 0.98666 1.02162 0.91956 0.93901 0.92152 0.92806 0.91326 0.94470 0.92888 0.84370 0.89540 0.93326 0.82532 0.81182 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.40 71.98 0.68 -4.20 16 2 C -0.16 -5.90 5.23 30.60 0.16 -5.74 16 3 C 0.19 7.95 1.92 44.17 0.08 8.04 16 4 H 0.03 1.40 6.89 -2.39 -0.02 1.38 16 5 C -0.48 -25.98 7.86 25.60 0.20 -25.78 16 6 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 7 C 0.01 0.73 5.45 84.65 0.46 1.19 16 8 N -0.95 -58.34 13.96 21.45 0.30 -58.04 16 9 Si 0.94 43.11 24.33 68.60 1.67 44.77 16 10 H -0.27 -11.91 6.91 99.48 0.69 -11.22 16 11 H -0.25 -10.23 6.53 99.48 0.65 -9.58 16 12 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 13 N -0.68 -23.77 6.25 -499.45 -3.12 -26.90 16 14 C 0.09 2.48 5.60 85.56 0.48 2.95 16 15 C -0.06 -1.33 5.35 -19.86 -0.11 -1.44 16 16 C -0.08 -1.57 9.70 22.27 0.22 -1.35 16 17 C -0.12 -2.24 10.02 22.30 0.22 -2.02 16 18 C 0.05 1.11 7.31 22.41 0.16 1.28 16 19 F -0.14 -3.48 17.18 44.97 0.77 -2.71 16 20 C 0.05 1.22 7.31 22.41 0.16 1.38 16 21 F -0.14 -3.70 17.18 44.97 0.77 -2.93 16 22 C -0.12 -2.68 9.68 22.31 0.22 -2.46 16 23 H 0.04 1.87 6.89 -2.38 -0.02 1.86 16 24 H 0.06 1.90 6.61 -2.39 -0.02 1.88 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 2.09 7.40 -2.39 -0.02 2.08 16 27 H 0.04 1.49 3.39 -2.39 -0.01 1.48 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.34 11.38 6.54 -89.69 -0.59 10.79 16 30 H 0.09 2.22 8.07 -2.39 -0.02 2.20 16 31 H 0.05 1.17 7.32 -2.38 -0.02 1.15 16 32 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -62.91 286.07 3.79 -59.11 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.46 Total: 14.83 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 2.94 Total: -28.14 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -2.82 Total: -84.94 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 1.55 Total: -5.64 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.67 Total: 44.77 kcal Total: -62.91 3.79 -59.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049577708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.514 kcal (2) G-P(sol) polarization free energy of solvation -62.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds