Wall clock time and date at job start Sun Mar 29 2020 23:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47019 * 2 1 4 4 N 1.46500 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.37094 * 119.99638 * 263.57530 * 4 3 2 6 6 H 1.08003 * 120.00038 * 147.23824 * 5 4 3 7 7 C 1.38955 * 120.00057 * 327.23613 * 5 4 3 8 8 N 1.31410 * 120.00266 * 344.24132 * 7 5 4 9 9 Si 1.86805 * 119.99725 * 164.24500 * 7 5 4 10 10 H 1.48492 * 109.47390 * 64.99906 * 9 7 5 11 11 H 1.48504 * 109.46740 * 185.00101 * 9 7 5 12 12 H 1.48504 * 109.47073 * 304.99591 * 9 7 5 13 13 C 1.34773 * 120.00355 * 83.58087 * 4 3 2 14 14 O 1.21298 * 119.99934 * 6.48273 * 13 4 3 15 15 C 1.50699 * 119.99971 * 186.48532 * 13 4 3 16 16 C 1.50704 * 115.54842 * 279.32007 * 15 13 4 17 17 O 1.20821 * 119.99862 * 111.74892 * 16 15 13 18 18 O 1.34234 * 119.99905 * 291.74375 * 16 15 13 19 19 C 1.45202 * 116.99739 * 185.38252 * 18 16 15 20 20 C 1.52996 * 117.49726 * 133.61416 * 15 13 4 21 21 C 1.52991 * 117.50098 * 64.98954 * 15 13 4 22 22 H 1.08996 * 109.47238 * 300.00029 * 1 2 3 23 23 H 1.08993 * 109.47209 * 60.00341 * 1 2 3 24 24 H 1.09004 * 109.46805 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47169 * 239.99426 * 2 1 3 26 26 H 1.08997 * 109.46884 * 119.99277 * 2 1 3 27 27 H 1.08997 * 109.47618 * 59.99701 * 3 2 1 28 28 H 1.09010 * 109.46760 * 299.99687 * 3 2 1 29 29 H 0.96996 * 120.00345 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46672 * 184.25021 * 19 18 16 31 31 H 1.08999 * 109.47001 * 304.25574 * 19 18 16 32 32 H 1.09006 * 109.46691 * 64.25662 * 19 18 16 33 33 H 1.08992 * 117.50344 * 359.97438 * 20 15 13 34 34 H 1.09007 * 117.49882 * 145.01771 * 20 15 13 35 35 H 1.08998 * 117.50145 * 214.97643 * 21 15 13 36 36 H 1.09002 * 117.49691 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5752 1.1790 6 1 5.1421 1.0805 1.3091 7 6 3.6623 2.3461 2.2071 8 7 2.6839 3.1881 1.9608 9 14 4.3427 2.1857 3.9394 10 1 5.7542 2.6465 3.9616 11 1 3.5356 3.0182 4.8672 12 1 4.2790 0.7649 4.3667 13 6 4.1785 1.3122 -1.1607 14 8 3.5774 1.3131 -2.2143 15 6 5.6782 1.1652 -1.1490 16 6 6.4558 2.4473 -0.9976 17 8 7.0818 2.6583 0.0140 18 8 6.4529 3.3547 -1.9868 19 6 7.3178 4.5097 -1.8243 20 6 6.2874 0.0681 -2.0242 21 6 6.2596 -0.0940 -0.5031 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 2.3147 3.7259 2.6786 30 1 7.1641 5.1983 -2.6551 31 1 7.0803 5.0124 -0.8867 32 1 8.3583 4.1851 -1.8091 33 1 5.6035 -0.5476 -2.6083 34 1 7.2508 0.2736 -2.4910 35 1 7.2047 0.0048 0.0309 36 1 5.5573 -0.8163 -0.0871 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170608817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:06 Heat of formation + Delta-G solvation = -90.412378 kcal Electronic energy + Delta-G solvation = -20157.153738 eV Core-core repulsion = 17028.922529 eV Total energy + Delta-G solvation = -3128.231209 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26101 -38.64635 -36.35983 -35.56653 -34.80920 -32.72984 -31.22891 -27.80058 -26.20146 -25.10539 -23.77986 -22.13016 -21.41578 -20.17153 -18.97901 -17.87949 -16.60299 -16.17660 -15.78367 -15.34318 -14.63029 -14.49195 -14.16341 -13.84883 -13.35620 -13.30429 -12.67986 -12.49928 -12.32454 -11.75049 -11.49689 -11.39348 -11.32327 -11.20548 -10.93247 -10.75350 -10.61691 -10.34809 -10.31999 -10.30527 -9.99845 -9.76724 -9.70369 -9.08994 -8.50684 -7.56395 -6.32144 -4.04823 2.69405 3.05323 3.18432 3.22834 3.25854 3.75028 4.01860 4.17275 4.64870 5.01776 5.11590 5.26204 5.37580 5.41119 5.48579 5.69175 5.80103 5.84856 5.86303 5.92801 6.06273 6.21374 6.30673 6.43470 6.53028 6.55017 6.70806 6.83152 6.85145 7.12735 7.40641 7.60646 7.89882 8.31155 8.40670 9.05848 9.44479 9.85041 10.65623 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.010463 C = 0.007802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.173859 B = 2675.478172 C = 3587.955426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.103 3.897 4 N -0.424 5.424 5 C -0.332 4.332 6 H 0.100 0.900 7 C 0.041 3.959 8 N -0.866 5.866 9 Si 0.918 3.082 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.501 3.499 14 O -0.588 6.588 15 C -0.127 4.127 16 C 0.517 3.483 17 O -0.493 6.493 18 O -0.351 6.351 19 C 0.036 3.964 20 C -0.142 4.142 21 C -0.131 4.131 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.127 0.873 28 H 0.051 0.949 29 H 0.270 0.730 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 -3.074 -2.918 6.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.020 4.020 4 N -0.140 5.140 5 C -0.460 4.460 6 H 0.117 0.883 7 C -0.163 4.163 8 N -0.504 5.504 9 Si 0.744 3.256 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.196 1.196 13 C 0.287 3.713 14 O -0.473 6.473 15 C -0.132 4.132 16 C 0.359 3.641 17 O -0.378 6.378 18 O -0.267 6.267 19 C -0.058 4.058 20 C -0.179 4.179 21 C -0.168 4.168 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.259 -2.804 -2.975 5.903 hybrid contribution 0.437 0.308 1.071 1.197 sum 4.696 -2.496 -1.904 5.649 Atomic orbital electron populations 1.21636 0.96450 1.00386 1.01485 1.21836 0.94900 0.99423 1.01074 1.21798 0.80531 0.94733 1.04963 1.43514 1.05174 1.60390 1.04941 1.19678 1.05975 1.29754 0.90620 0.88260 1.25321 0.96655 0.93873 1.00499 1.69747 1.26130 1.21339 1.33214 0.86122 0.79331 0.78519 0.81642 1.19509 1.20882 1.19632 1.18748 0.85278 0.82825 0.84405 1.90548 1.68743 1.56801 1.31196 1.20563 0.95165 0.87462 1.09961 1.22011 0.77986 0.83648 0.80490 1.90617 1.41560 1.76889 1.28781 1.86566 1.61907 1.32093 1.46169 1.23206 0.93048 0.86278 1.03306 1.23074 1.01777 0.98948 0.94128 1.23058 1.02718 0.96080 0.94919 0.92893 0.93132 0.93664 0.93201 0.92353 0.85632 0.93062 0.91954 0.88498 0.91786 0.92432 0.87301 0.88313 0.87743 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.74 6.21 -26.73 -0.17 -2.91 16 3 C 0.10 2.49 4.93 -4.04 -0.02 2.47 16 4 N -0.42 -10.87 2.58 -114.81 -0.30 -11.16 16 5 C -0.33 -8.61 8.59 -14.93 -0.13 -8.74 16 6 H 0.10 2.51 5.89 -52.48 -0.31 2.20 16 7 C 0.04 1.06 5.10 -17.47 -0.09 0.97 16 8 N -0.87 -23.15 10.86 55.50 0.60 -22.55 16 9 Si 0.92 20.30 29.58 -169.99 -5.03 15.27 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 13 C 0.50 12.57 6.72 -10.99 -0.07 12.50 16 14 O -0.59 -15.89 16.66 5.54 0.09 -15.80 16 15 C -0.13 -2.72 1.36 -156.82 -0.21 -2.93 16 16 C 0.52 11.35 6.93 36.01 0.25 11.60 16 17 O -0.49 -11.40 16.43 -18.75 -0.31 -11.71 16 18 O -0.35 -7.14 10.57 -39.27 -0.41 -7.55 16 19 C 0.04 0.54 10.65 101.05 1.08 1.62 16 20 C -0.14 -2.37 9.86 -26.73 -0.26 -2.63 16 21 C -0.13 -2.29 8.14 -26.74 -0.22 -2.51 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.13 3.23 5.00 -51.93 -0.26 2.97 16 28 H 0.05 1.30 7.54 -51.92 -0.39 0.91 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.10 1.70 8.04 -51.93 -0.42 1.28 16 36 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 LS Contribution 310.57 15.07 4.68 4.68 Total: -1.00 -31.20 310.57 -5.30 -36.51 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.15 Total: 4.91 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 0.52 Total: 7.40 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.31 Total: -33.71 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.63 Total: -35.06 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.20 -5.30 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170608817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.904 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds