Wall clock time and date at job start Sun Mar 29 2020 23:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47019 * 2 1 4 4 N 1.46500 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.37094 * 119.99638 * 263.57530 * 4 3 2 6 6 H 1.08003 * 120.00038 * 147.23824 * 5 4 3 7 7 C 1.38955 * 120.00057 * 327.23613 * 5 4 3 8 8 N 1.31410 * 120.00266 * 344.24132 * 7 5 4 9 9 Si 1.86805 * 119.99725 * 164.24500 * 7 5 4 10 10 H 1.48492 * 109.47390 * 64.99906 * 9 7 5 11 11 H 1.48504 * 109.46740 * 185.00101 * 9 7 5 12 12 H 1.48504 * 109.47073 * 304.99591 * 9 7 5 13 13 C 1.34773 * 120.00355 * 83.58087 * 4 3 2 14 14 O 1.21298 * 119.99934 * 6.48273 * 13 4 3 15 15 C 1.50699 * 119.99971 * 186.48532 * 13 4 3 16 16 C 1.50704 * 115.54842 * 279.32007 * 15 13 4 17 17 O 1.20821 * 119.99862 * 111.74892 * 16 15 13 18 18 O 1.34234 * 119.99905 * 291.74375 * 16 15 13 19 19 C 1.45202 * 116.99739 * 185.38252 * 18 16 15 20 20 C 1.52996 * 117.49726 * 133.61416 * 15 13 4 21 21 C 1.52991 * 117.50098 * 64.98954 * 15 13 4 22 22 H 1.08996 * 109.47238 * 300.00029 * 1 2 3 23 23 H 1.08993 * 109.47209 * 60.00341 * 1 2 3 24 24 H 1.09004 * 109.46805 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47169 * 239.99426 * 2 1 3 26 26 H 1.08997 * 109.46884 * 119.99277 * 2 1 3 27 27 H 1.08997 * 109.47618 * 59.99701 * 3 2 1 28 28 H 1.09010 * 109.46760 * 299.99687 * 3 2 1 29 29 H 0.96996 * 120.00345 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46672 * 184.25021 * 19 18 16 31 31 H 1.08999 * 109.47001 * 304.25574 * 19 18 16 32 32 H 1.09006 * 109.46691 * 64.25662 * 19 18 16 33 33 H 1.08992 * 117.50344 * 359.97438 * 20 15 13 34 34 H 1.09007 * 117.49882 * 145.01771 * 20 15 13 35 35 H 1.08998 * 117.50145 * 214.97643 * 21 15 13 36 36 H 1.09002 * 117.49691 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5752 1.1790 6 1 5.1421 1.0805 1.3091 7 6 3.6623 2.3461 2.2071 8 7 2.6839 3.1881 1.9608 9 14 4.3427 2.1857 3.9394 10 1 5.7542 2.6465 3.9616 11 1 3.5356 3.0182 4.8672 12 1 4.2790 0.7649 4.3667 13 6 4.1785 1.3122 -1.1607 14 8 3.5774 1.3131 -2.2143 15 6 5.6782 1.1652 -1.1490 16 6 6.4558 2.4473 -0.9976 17 8 7.0818 2.6583 0.0140 18 8 6.4529 3.3547 -1.9868 19 6 7.3178 4.5097 -1.8243 20 6 6.2874 0.0681 -2.0242 21 6 6.2596 -0.0940 -0.5031 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 2.3147 3.7259 2.6786 30 1 7.1641 5.1983 -2.6551 31 1 7.0803 5.0124 -0.8867 32 1 8.3583 4.1851 -1.8091 33 1 5.6035 -0.5476 -2.6083 34 1 7.2508 0.2736 -2.4910 35 1 7.2047 0.0048 0.0309 36 1 5.5573 -0.8163 -0.0871 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170608817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:06 Heat of formation + Delta-G solvation = -108.821664 kcal Electronic energy + Delta-G solvation = -20157.952024 eV Core-core repulsion = 17028.922529 eV Total energy + Delta-G solvation = -3129.029495 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.89871 -40.44827 -37.94067 -37.30173 -36.62102 -34.46676 -33.14274 -29.14456 -27.91513 -26.96084 -25.40245 -23.51034 -23.06404 -21.89617 -20.81520 -19.60662 -18.28793 -17.88309 -17.38197 -17.09673 -16.54290 -16.17088 -15.74624 -15.50928 -15.05723 -14.92311 -14.14041 -14.05564 -14.01497 -13.31697 -13.19844 -13.07369 -13.04494 -12.59910 -12.54602 -12.40916 -12.26170 -12.05234 -12.00075 -11.81656 -11.59255 -11.46860 -11.30581 -11.01976 -10.42164 -9.54745 -8.27949 -6.06629 1.01447 1.38734 1.43643 1.52840 1.58600 1.99640 2.27050 2.54349 2.93805 3.09531 3.67921 3.76047 3.93808 4.11658 4.23414 4.26488 4.28772 4.34510 4.54824 4.60687 4.61944 4.69249 4.84007 4.87210 4.99689 5.10140 5.11800 5.25030 5.30013 5.37642 5.45815 5.65268 5.96047 6.42774 6.70231 7.07630 7.49680 7.90264 8.70239 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.010463 C = 0.007802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.173859 B = 2675.478172 C = 3587.955426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.101 3.899 4 N -0.436 5.436 5 C -0.342 4.342 6 H 0.104 0.896 7 C -0.002 4.002 8 N -0.896 5.896 9 Si 0.979 3.021 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.256 1.256 13 C 0.492 3.508 14 O -0.619 6.619 15 C -0.170 4.170 16 C 0.516 3.484 17 O -0.513 6.513 18 O -0.367 6.367 19 C 0.027 3.973 20 C -0.112 4.112 21 C -0.116 4.116 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.027 0.973 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 -4.092 -2.584 7.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C -0.022 4.022 4 N -0.152 5.152 5 C -0.469 4.469 6 H 0.121 0.879 7 C -0.203 4.203 8 N -0.535 5.535 9 Si 0.802 3.198 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.180 1.180 13 C 0.280 3.720 14 O -0.506 6.506 15 C -0.174 4.174 16 C 0.359 3.641 17 O -0.401 6.401 18 O -0.284 6.284 19 C -0.066 4.066 20 C -0.149 4.149 21 C -0.153 4.153 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.130 0.870 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.250 -3.827 -2.649 7.016 hybrid contribution 0.136 0.708 0.881 1.138 sum 5.386 -3.119 -1.768 6.470 Atomic orbital electron populations 1.21596 0.93584 1.02392 1.01688 1.21717 0.97355 0.96504 1.00541 1.21787 0.80538 0.96890 1.02948 1.43775 1.05666 1.60373 1.05366 1.19896 1.06263 1.29942 0.90802 0.87851 1.26137 0.96941 0.93426 1.03832 1.69859 1.27281 1.22083 1.34254 0.85198 0.78058 0.79198 0.77312 1.20165 1.20433 1.18031 1.19331 0.87063 0.81869 0.83707 1.90502 1.70094 1.58003 1.32022 1.20594 0.92767 0.88946 1.15103 1.22130 0.77662 0.83942 0.80382 1.90585 1.42759 1.77377 1.29418 1.86542 1.62885 1.33117 1.45819 1.23595 0.93558 0.85233 1.04170 1.23249 1.02482 0.95445 0.93744 1.23157 1.02811 0.93382 0.95971 0.92620 0.93041 0.90713 0.94009 0.92383 0.86963 0.95471 0.91809 0.85021 0.93153 0.90212 0.86937 0.85263 0.86225 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.91 71.98 0.71 -3.70 16 2 C -0.12 -5.02 6.21 30.60 0.19 -4.83 16 3 C 0.10 5.05 4.93 86.38 0.43 5.47 16 4 N -0.44 -22.71 2.58 -635.52 -1.64 -24.35 16 5 C -0.34 -17.75 8.59 84.04 0.72 -17.03 16 6 H 0.10 5.19 5.89 -2.91 -0.02 5.18 16 7 C 0.00 -0.10 5.10 84.93 0.43 0.33 16 8 N -0.90 -48.55 10.86 21.66 0.24 -48.32 16 9 Si 0.98 41.23 29.58 68.60 2.03 43.25 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 13 C 0.49 25.01 6.72 87.66 0.59 25.60 16 14 O -0.62 -34.15 16.66 -3.09 -0.05 -34.20 16 15 C -0.17 -7.14 1.36 -53.68 -0.07 -7.21 16 16 C 0.52 22.39 6.93 71.24 0.49 22.88 16 17 O -0.51 -23.49 16.43 21.98 0.36 -23.13 16 18 O -0.37 -14.70 10.57 -51.46 -0.54 -15.25 16 19 C 0.03 0.79 10.65 113.37 1.21 1.99 16 20 C -0.11 -3.49 9.86 30.59 0.30 -3.19 16 21 C -0.12 -3.87 8.14 30.59 0.25 -3.62 16 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.11 5.93 5.00 -2.39 -0.01 5.92 16 28 H 0.03 1.43 7.54 -2.38 -0.02 1.42 16 29 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 30 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.05 1.58 7.98 -2.39 -0.02 1.56 16 32 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.13 3.22 8.14 -2.38 -0.02 3.20 16 35 H 0.12 3.61 8.04 -2.39 -0.02 3.59 16 36 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 Total: -1.00 -68.10 310.57 6.71 -61.39 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.07 Total: 23.90 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.25 Total: 16.70 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.40 Total: -72.67 kcal Atomic # 8 Polarization: -72.34 SS G_CDS: -0.23 Total: -72.57 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Total: -68.10 6.71 -61.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170608817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.431 kcal (2) G-P(sol) polarization free energy of solvation -68.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds