Wall clock time and date at job start Sun Mar 29 2020 23:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46805 * 2 1 4 4 N 1.46504 * 109.46765 * 179.97438 * 3 2 1 5 5 C 1.37101 * 119.99897 * 264.53450 * 4 3 2 6 6 H 1.07999 * 119.99594 * 145.96191 * 5 4 3 7 7 C 1.38948 * 120.00180 * 325.96166 * 5 4 3 8 8 N 1.31412 * 119.99708 * 337.85303 * 7 5 4 9 9 Si 1.86801 * 119.99825 * 157.85622 * 7 5 4 10 10 H 1.48489 * 109.47108 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46921 * 119.99886 * 9 7 5 12 12 H 1.48503 * 109.46816 * 239.99648 * 9 7 5 13 13 C 1.34778 * 119.99648 * 84.53899 * 4 3 2 14 14 O 1.21282 * 120.00187 * 0.02562 * 13 4 3 15 15 C 1.50702 * 119.99464 * 180.27331 * 13 4 3 16 16 H 1.09001 * 115.55096 * 325.30724 * 15 13 4 17 17 C 1.52998 * 117.49921 * 110.98048 * 15 13 4 18 18 C 1.52996 * 117.49831 * 179.64102 * 15 13 4 19 19 H 1.09006 * 117.49780 * 359.97438 * 18 15 13 20 20 C 1.50701 * 117.50396 * 144.99425 * 18 15 13 21 21 O 1.20829 * 119.99709 * 0.02562 * 20 18 15 22 22 O 1.34225 * 120.00235 * 179.97438 * 20 18 15 23 23 C 1.45199 * 117.00114 * 180.02562 * 22 20 18 24 24 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47517 * 300.00080 * 1 2 3 26 26 H 1.08996 * 109.47284 * 60.00368 * 1 2 3 27 27 H 1.08999 * 109.47517 * 239.99920 * 2 1 3 28 28 H 1.09006 * 109.47212 * 119.99565 * 2 1 3 29 29 H 1.08999 * 109.47148 * 59.99694 * 3 2 1 30 30 H 1.08996 * 109.46899 * 299.99868 * 3 2 1 31 31 H 0.96996 * 119.99529 * 180.02562 * 8 7 5 32 32 H 1.09006 * 117.49627 * 214.97528 * 17 15 13 33 33 H 1.08999 * 117.49859 * 359.97438 * 17 15 13 34 34 H 1.08998 * 109.47528 * 300.00080 * 23 22 20 35 35 H 1.09007 * 109.47201 * 59.99938 * 23 22 20 36 36 H 1.08998 * 109.47324 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.5559 1.1828 6 1 5.1311 1.0423 1.3129 7 6 3.6733 2.3313 2.2136 8 7 2.8026 3.2795 1.9495 9 14 4.2165 2.0259 3.9746 10 1 5.1961 0.9103 4.0040 11 1 4.8488 3.2549 4.5177 12 1 3.0360 1.6695 4.8020 13 6 4.1792 1.3313 -1.1610 14 8 3.5732 1.2317 -2.2069 15 6 5.6862 1.3251 -1.1598 16 1 6.1583 1.9556 -0.4063 17 6 6.3876 0.0154 -1.5252 18 6 6.3932 1.1876 -2.5096 19 1 5.7683 1.1012 -3.3986 20 6 7.6890 1.9342 -2.6958 21 8 8.1319 2.6091 -1.7967 22 8 8.3516 1.8487 -3.8600 23 6 9.5930 2.5940 -3.9682 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9564 0.8899 30 1 1.6765 1.9564 -0.8900 31 1 2.4423 3.8211 2.6691 32 1 7.3214 -0.2155 -1.0124 33 1 5.7591 -0.8419 -1.7661 34 1 9.3935 3.6555 -3.8221 35 1 10.2923 2.2476 -3.2071 36 1 10.0255 2.4379 -4.9565 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263902675.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:12 Heat of formation + Delta-G solvation = -98.685639 kcal Electronic energy + Delta-G solvation = -19222.007485 eV Core-core repulsion = 16093.417521 eV Total energy + Delta-G solvation = -3128.589964 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40909 -38.85056 -36.71768 -35.66978 -34.62956 -32.79217 -31.28487 -28.15452 -26.27809 -25.06609 -24.07997 -22.66707 -20.77344 -20.06447 -18.97126 -17.82629 -16.70398 -16.63685 -16.15569 -15.60786 -14.72861 -14.52249 -14.08653 -13.88032 -13.48983 -13.44922 -13.05043 -12.54482 -12.33113 -11.95170 -11.83220 -11.47255 -11.38379 -11.30116 -10.99436 -10.71931 -10.67245 -10.38501 -10.34168 -10.31971 -10.13003 -9.98422 -9.74805 -9.12338 -8.51045 -7.56785 -6.41784 -4.07353 2.30951 2.77982 3.08479 3.21225 3.25194 3.57664 4.07194 4.35946 4.59733 4.91389 5.03489 5.10785 5.17816 5.23764 5.37578 5.50884 5.57988 5.78696 5.84833 5.91090 6.02819 6.23793 6.31267 6.47840 6.51912 6.53993 6.63827 6.69669 6.81547 7.09809 7.35355 7.47408 7.87681 7.96396 8.34641 9.03324 9.46485 9.89164 10.59651 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.006450 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.567718 B = 4340.194922 C = 5348.153298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.427 5.427 5 C -0.340 4.340 6 H 0.094 0.906 7 C 0.044 3.956 8 N -0.855 5.855 9 Si 0.914 3.086 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.491 3.509 14 O -0.605 6.605 15 C -0.112 4.112 16 H 0.137 0.863 17 C -0.126 4.126 18 C -0.155 4.155 19 H 0.143 0.857 20 C 0.494 3.506 21 O -0.504 6.504 22 O -0.357 6.357 23 C 0.035 3.965 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.270 0.730 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.999 -4.444 -4.766 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.143 5.143 5 C -0.468 4.468 6 H 0.111 0.889 7 C -0.163 4.163 8 N -0.491 5.491 9 Si 0.740 3.260 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.204 1.204 13 C 0.279 3.721 14 O -0.492 6.492 15 C -0.133 4.133 16 H 0.155 0.845 17 C -0.164 4.164 18 C -0.174 4.174 19 H 0.161 0.839 20 C 0.338 3.662 21 O -0.392 6.392 22 O -0.274 6.274 23 C -0.059 4.059 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.723 -4.106 -4.871 8.564 hybrid contribution 0.480 0.196 0.995 1.122 sum 6.204 -3.910 -3.876 8.295 Atomic orbital electron populations 1.21651 0.96546 1.00449 1.01421 1.21833 0.94757 0.99368 1.01333 1.21494 0.81024 0.94643 1.03757 1.43403 1.04855 1.61254 1.04801 1.19528 1.07435 1.29502 0.90305 0.88858 1.25354 0.96924 0.93428 1.00569 1.69959 1.29981 1.16024 1.33175 0.86086 0.78788 0.78671 0.82480 1.19048 1.20670 1.20441 1.19271 0.87090 0.81827 0.83909 1.90520 1.69763 1.57098 1.31829 1.22251 0.94728 1.00872 0.95436 0.84511 1.22959 1.02432 0.91880 0.99092 1.21681 0.93659 1.03794 0.98276 0.83924 1.22790 0.84976 0.78878 0.79582 1.90665 1.67612 1.38575 1.42319 1.86503 1.36335 1.66576 1.37978 1.23233 0.83464 0.96272 1.02918 0.93612 0.92992 0.93116 0.92830 0.92331 0.87390 0.92933 0.91977 0.88005 0.87227 0.91944 0.92046 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.15 0.37 -2.02 16 2 C -0.13 -2.73 6.22 -26.73 -0.17 -2.89 16 3 C 0.11 2.72 4.90 -4.04 -0.02 2.70 16 4 N -0.43 -10.74 2.56 -114.81 -0.29 -11.03 16 5 C -0.34 -8.57 8.44 -14.93 -0.13 -8.70 16 6 H 0.09 2.26 7.15 -52.49 -0.38 1.88 16 7 C 0.04 1.09 4.92 -17.47 -0.09 1.01 16 8 N -0.86 -22.47 11.34 55.50 0.63 -21.84 16 9 Si 0.91 19.34 29.61 -169.99 -5.03 14.31 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.49 11.97 7.38 -10.98 -0.08 11.89 16 14 O -0.61 -15.77 15.93 5.56 0.09 -15.68 16 15 C -0.11 -2.33 4.50 -91.77 -0.41 -2.74 16 16 H 0.14 3.03 6.93 -51.93 -0.36 2.67 16 17 C -0.13 -2.08 9.94 -26.69 -0.27 -2.34 16 18 C -0.15 -2.77 5.82 -91.74 -0.53 -3.30 16 19 H 0.14 2.56 7.67 -51.93 -0.40 2.16 16 20 C 0.49 8.61 7.74 36.01 0.28 8.89 16 21 O -0.50 -9.98 16.01 -18.75 -0.30 -10.28 16 22 O -0.36 -5.29 10.56 -39.24 -0.41 -5.71 16 23 C 0.04 0.38 10.56 101.05 1.07 1.45 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.11 2.72 5.35 -51.93 -0.28 2.44 16 30 H 0.05 1.31 7.59 -51.93 -0.39 0.91 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 34 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 35 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 312.05 15.07 4.70 4.70 Total: -1.00 -29.94 312.05 -5.77 -35.71 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.17 Total: 5.88 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 0.02 Total: 3.94 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.34 Total: -32.87 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.63 Total: -31.67 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.94 -5.77 -35.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263902675.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.977 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds