Wall clock time and date at job start Sun Mar 29 2020 23:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00572 * 2 1 4 4 C 1.53001 * 109.47525 * 119.99454 * 3 2 1 5 5 O 1.42904 * 109.47052 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47608 * 240.00002 * 3 2 1 7 7 C 1.50701 * 109.47083 * 55.37451 * 6 3 2 8 8 O 1.21286 * 119.99563 * 6.13220 * 7 6 3 9 9 N 1.34769 * 119.99906 * 186.13542 * 7 6 3 10 10 C 1.47581 * 134.49113 * 179.97438 * 9 7 6 11 11 C 1.53941 * 86.11662 * 155.36252 * 10 9 7 12 12 O 1.42909 * 113.74418 * 269.15481 * 11 10 9 13 13 C 1.50705 * 113.74295 * 137.95795 * 11 10 9 14 14 H 1.07995 * 119.99895 * 5.32759 * 13 11 10 15 15 C 1.37881 * 119.99839 * 185.33232 * 13 11 10 16 16 N 1.31515 * 119.99983 * 14.84241 * 15 13 11 17 17 Si 1.86794 * 119.99785 * 194.83775 * 15 13 11 18 18 H 1.48501 * 109.47229 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47382 * 300.00118 * 17 15 13 20 20 H 1.48499 * 109.47229 * 60.00261 * 17 15 13 21 21 C 1.47575 * 134.49528 * 0.02562 * 9 7 6 22 22 H 1.07994 * 120.00184 * 179.97438 * 1 2 3 23 23 H 1.08005 * 119.99733 * 0.02562 * 1 2 3 24 24 H 1.08010 * 119.99771 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47339 * 184.41489 * 4 3 2 26 26 H 1.09000 * 109.47309 * 304.42479 * 4 3 2 27 27 H 1.09008 * 109.46550 * 64.41757 * 4 3 2 28 28 H 0.96706 * 113.99900 * 299.99884 * 5 3 2 29 29 H 1.09002 * 109.46480 * 295.37522 * 6 3 2 30 30 H 1.08997 * 109.47012 * 175.37385 * 6 3 2 31 31 H 1.09003 * 113.76746 * 41.06437 * 10 9 7 32 32 H 1.08997 * 113.87234 * 269.67520 * 10 9 7 33 33 H 0.96699 * 113.99752 * 172.39683 * 12 11 10 34 34 H 0.96998 * 120.00403 * 357.92726 * 16 15 13 35 35 H 1.08997 * 113.77354 * 90.33707 * 21 9 7 36 36 H 1.08999 * 113.76792 * 318.93483 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 1.2493 5 8 1.1351 2.3913 0.0006 6 6 2.9433 1.3861 -1.2492 7 6 2.0912 1.1926 -2.4771 8 8 0.8850 1.1194 -2.3727 9 7 2.6694 1.1009 -3.6909 10 6 2.1651 0.9154 -5.0654 11 6 3.4643 1.6028 -5.5230 12 8 3.3503 3.0215 -5.6515 13 6 4.1038 0.9538 -6.7234 14 1 3.6023 0.1424 -7.2299 15 6 5.3293 1.3958 -7.1750 16 7 6.0727 2.1662 -6.4112 17 14 5.9336 0.9004 -8.8716 18 1 7.2694 1.5013 -9.1164 19 1 6.0354 -0.5791 -8.9484 20 1 4.9768 1.3847 -9.8988 21 6 4.0612 1.1448 -4.1795 22 1 -0.5400 -0.9352 -0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 3.4279 2.3615 1.2897 26 1 2.3263 1.2498 2.1375 27 1 3.7021 0.6045 1.2106 28 1 0.5434 2.4034 -0.7643 29 1 3.7044 0.6069 -1.2087 30 1 3.4251 2.3629 -1.2915 31 1 1.2642 1.4889 -5.2840 32 1 2.0893 -0.1283 -5.3704 33 1 4.1896 3.4694 -5.8250 34 1 5.7461 2.4481 -5.5424 35 1 4.5427 0.1679 -4.2230 36 1 4.6748 1.9015 -3.6906 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332022311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:24 Heat of formation + Delta-G solvation = -83.273740 kcal Electronic energy + Delta-G solvation = -19636.205438 eV Core-core repulsion = 16508.283784 eV Total energy + Delta-G solvation = -3127.921654 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08200 -38.71364 -36.79158 -34.34062 -32.82884 -32.43104 -31.30741 -29.24903 -27.32631 -25.56671 -24.73526 -22.32350 -20.48445 -19.50320 -18.54760 -17.97643 -16.92561 -16.32621 -15.93414 -15.41461 -14.85150 -14.51233 -14.24894 -13.95873 -13.87156 -13.03740 -12.80578 -12.46293 -12.33624 -12.27992 -12.06447 -11.77405 -11.64806 -11.50538 -11.19238 -10.98330 -10.90439 -10.60942 -10.25580 -9.99358 -9.69755 -9.36596 -9.05945 -8.86082 -8.40855 -7.95256 -6.75628 -4.52859 2.49573 3.03271 3.26981 3.31214 3.37899 3.49321 4.27125 4.36003 4.66736 4.80800 4.87664 4.88757 5.24324 5.34863 5.40628 5.52710 5.62905 5.66661 5.78952 5.84024 5.99494 6.07656 6.09504 6.15665 6.29552 6.33453 6.44339 6.72810 6.73905 6.95634 7.59440 7.82692 8.04684 8.30400 8.40303 8.57841 8.77440 9.17999 10.57630 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.004989 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.581627 B = 5610.531397 C = 5791.666702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.188 4.188 3 C 0.179 3.821 4 C -0.133 4.133 5 O -0.563 6.563 6 C -0.161 4.161 7 C 0.530 3.470 8 O -0.560 6.560 9 N -0.631 5.631 10 C 0.123 3.877 11 C 0.216 3.784 12 O -0.566 6.566 13 C -0.620 4.620 14 H 0.065 0.935 15 C 0.035 3.965 16 N -0.895 5.895 17 Si 1.071 2.929 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.283 1.283 21 C 0.070 3.930 22 H 0.091 0.909 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.387 0.613 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.374 0.626 34 H 0.267 0.733 35 H 0.087 0.913 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 -3.104 9.501 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.207 4.207 3 C 0.137 3.863 4 C -0.191 4.191 5 O -0.374 6.374 6 C -0.201 4.201 7 C 0.320 3.680 8 O -0.442 6.442 9 N -0.365 5.365 10 C 0.001 3.999 11 C 0.175 3.825 12 O -0.373 6.373 13 C -0.658 4.658 14 H 0.083 0.917 15 C -0.171 4.171 16 N -0.531 5.531 17 Si 0.897 3.103 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.053 4.053 22 H 0.109 0.891 23 H 0.119 0.881 24 H 0.124 0.876 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.240 0.760 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.223 0.777 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.564 -2.962 9.367 10.153 hybrid contribution -0.827 -0.378 0.389 0.989 sum -3.391 -3.340 9.756 10.855 Atomic orbital electron populations 1.23591 0.95955 1.01526 0.97847 1.23248 0.96853 0.97851 1.02716 1.19786 0.88106 0.85208 0.93179 1.21700 0.98685 1.02599 0.96068 1.86381 1.51028 1.48824 1.51182 1.22351 0.99675 1.04885 0.93211 1.20164 0.88237 0.76288 0.83263 1.90562 1.14787 1.53178 1.85642 1.50207 1.11115 1.69653 1.05481 1.23278 0.98993 1.00029 0.77626 1.20149 0.91114 0.79942 0.91308 1.86267 1.36562 1.20082 1.94433 1.22217 1.07355 1.21573 1.14632 0.91659 1.26010 0.92933 0.94072 1.04108 1.70990 1.36864 1.34475 1.10761 0.83507 0.76393 0.76230 0.74145 1.20542 1.21130 1.20959 1.24477 0.83113 1.01304 0.96402 0.89071 0.88066 0.87557 0.91609 0.91661 0.91135 0.75954 0.88614 0.88213 0.91044 0.89432 0.77695 0.92127 0.89503 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 12.63 29.01 0.37 -1.79 16 2 C -0.19 -2.66 7.41 -36.03 -0.27 -2.92 16 3 C 0.18 2.53 1.08 -91.77 -0.10 2.44 16 4 C -0.13 -1.51 8.82 37.16 0.33 -1.19 16 5 O -0.56 -8.98 11.94 -52.11 -0.62 -9.60 16 6 C -0.16 -2.42 4.75 -27.88 -0.13 -2.56 16 7 C 0.53 9.99 7.53 -10.99 -0.08 9.91 16 8 O -0.56 -11.37 12.69 -11.32 -0.14 -11.51 16 9 N -0.63 -12.71 3.61 -178.32 -0.64 -13.35 16 10 C 0.12 2.61 8.22 -2.98 -0.02 2.59 16 11 C 0.22 4.99 1.08 -90.83 -0.10 4.89 16 12 O -0.57 -13.70 13.46 -35.23 -0.47 -14.18 16 13 C -0.62 -15.47 8.56 -34.44 -0.29 -15.76 16 14 H 0.07 1.62 7.86 -52.49 -0.41 1.21 16 15 C 0.03 0.87 5.24 -17.82 -0.09 0.78 16 16 N -0.89 -23.12 13.02 55.43 0.72 -22.40 16 17 Si 1.07 22.43 29.93 -169.99 -5.09 17.34 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.29 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 C 0.07 1.44 7.11 -2.96 -0.02 1.42 16 22 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 23 H 0.10 1.47 6.41 -52.48 -0.34 1.14 16 24 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 28 H 0.39 6.42 5.81 45.56 0.26 6.68 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 33 H 0.37 8.80 6.90 45.56 0.31 9.11 16 34 H 0.27 6.68 5.32 -40.82 -0.22 6.47 16 35 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 36 H 0.07 1.29 7.82 -51.93 -0.41 0.88 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -27.99 299.65 -5.96 -33.95 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -3.81 Total: 17.43 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.42 Total: -2.19 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.08 Total: -35.75 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.24 Total: -35.29 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.09 Total: 17.34 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.99 -5.96 -33.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332022311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.325 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds