Wall clock time and date at job start Sun Mar 29 2020 23:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00572 * 2 1 4 4 C 1.53001 * 109.47525 * 119.99454 * 3 2 1 5 5 O 1.42904 * 109.47052 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47608 * 240.00002 * 3 2 1 7 7 C 1.50701 * 109.47083 * 55.37451 * 6 3 2 8 8 O 1.21286 * 119.99563 * 6.13220 * 7 6 3 9 9 N 1.34769 * 119.99906 * 186.13542 * 7 6 3 10 10 C 1.47581 * 134.49113 * 179.97438 * 9 7 6 11 11 C 1.53941 * 86.11662 * 155.36252 * 10 9 7 12 12 O 1.42909 * 113.74418 * 269.15481 * 11 10 9 13 13 C 1.50705 * 113.74295 * 137.95795 * 11 10 9 14 14 H 1.07995 * 119.99895 * 5.32759 * 13 11 10 15 15 C 1.37881 * 119.99839 * 185.33232 * 13 11 10 16 16 N 1.31515 * 119.99983 * 14.84241 * 15 13 11 17 17 Si 1.86794 * 119.99785 * 194.83775 * 15 13 11 18 18 H 1.48501 * 109.47229 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47382 * 300.00118 * 17 15 13 20 20 H 1.48499 * 109.47229 * 60.00261 * 17 15 13 21 21 C 1.47575 * 134.49528 * 0.02562 * 9 7 6 22 22 H 1.07994 * 120.00184 * 179.97438 * 1 2 3 23 23 H 1.08005 * 119.99733 * 0.02562 * 1 2 3 24 24 H 1.08010 * 119.99771 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47339 * 184.41489 * 4 3 2 26 26 H 1.09000 * 109.47309 * 304.42479 * 4 3 2 27 27 H 1.09008 * 109.46550 * 64.41757 * 4 3 2 28 28 H 0.96706 * 113.99900 * 299.99884 * 5 3 2 29 29 H 1.09002 * 109.46480 * 295.37522 * 6 3 2 30 30 H 1.08997 * 109.47012 * 175.37385 * 6 3 2 31 31 H 1.09003 * 113.76746 * 41.06437 * 10 9 7 32 32 H 1.08997 * 113.87234 * 269.67520 * 10 9 7 33 33 H 0.96699 * 113.99752 * 172.39683 * 12 11 10 34 34 H 0.96998 * 120.00403 * 357.92726 * 16 15 13 35 35 H 1.08997 * 113.77354 * 90.33707 * 21 9 7 36 36 H 1.08999 * 113.76792 * 318.93483 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 1.2493 5 8 1.1351 2.3913 0.0006 6 6 2.9433 1.3861 -1.2492 7 6 2.0912 1.1926 -2.4771 8 8 0.8850 1.1194 -2.3727 9 7 2.6694 1.1009 -3.6909 10 6 2.1651 0.9154 -5.0654 11 6 3.4643 1.6028 -5.5230 12 8 3.3503 3.0215 -5.6515 13 6 4.1038 0.9538 -6.7234 14 1 3.6023 0.1424 -7.2299 15 6 5.3293 1.3958 -7.1750 16 7 6.0727 2.1662 -6.4112 17 14 5.9336 0.9004 -8.8716 18 1 7.2694 1.5013 -9.1164 19 1 6.0354 -0.5791 -8.9484 20 1 4.9768 1.3847 -9.8988 21 6 4.0612 1.1448 -4.1795 22 1 -0.5400 -0.9352 -0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 3.4279 2.3615 1.2897 26 1 2.3263 1.2498 2.1375 27 1 3.7021 0.6045 1.2106 28 1 0.5434 2.4034 -0.7643 29 1 3.7044 0.6069 -1.2087 30 1 3.4251 2.3629 -1.2915 31 1 1.2642 1.4889 -5.2840 32 1 2.0893 -0.1283 -5.3704 33 1 4.1896 3.4694 -5.8250 34 1 5.7461 2.4481 -5.5424 35 1 4.5427 0.1679 -4.2230 36 1 4.6748 1.9015 -3.6906 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332022311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:24 Heat of formation + Delta-G solvation = -103.175329 kcal Electronic energy + Delta-G solvation = -19637.068436 eV Core-core repulsion = 16508.283784 eV Total energy + Delta-G solvation = -3128.784652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58740 -40.17967 -38.22808 -36.11820 -34.33789 -33.98677 -32.47404 -30.64641 -28.70992 -27.24900 -26.47578 -23.44989 -22.15639 -20.67130 -20.22990 -19.67588 -18.24399 -17.72641 -17.34569 -16.97694 -16.54931 -15.97359 -15.70441 -15.46402 -15.42861 -14.52060 -14.25649 -14.01023 -13.69519 -13.39534 -13.33215 -13.10173 -12.98858 -12.96881 -12.67287 -12.63381 -12.37454 -12.03272 -11.90666 -11.22880 -11.14944 -11.06806 -10.75633 -10.32941 -10.01313 -9.63417 -8.69968 -6.48777 1.40296 1.55617 1.60786 1.65615 1.83441 1.86458 2.54559 2.92219 3.23631 3.29526 3.53428 3.75048 3.79960 3.90309 4.23011 4.31295 4.34137 4.39666 4.51375 4.58470 4.62591 4.64832 4.78189 4.82765 4.91480 4.97684 5.07591 5.23437 5.65417 5.72936 5.87882 6.08727 6.45763 6.56241 6.77674 6.91547 7.06840 7.27600 8.64611 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.004989 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.581627 B = 5610.531397 C = 5791.666702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.194 4.194 3 C 0.171 3.829 4 C -0.130 4.130 5 O -0.573 6.573 6 C -0.153 4.153 7 C 0.524 3.476 8 O -0.576 6.576 9 N -0.634 5.634 10 C 0.122 3.878 11 C 0.196 3.804 12 O -0.577 6.577 13 C -0.635 4.635 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.912 5.912 17 Si 1.112 2.888 18 H -0.284 1.284 19 H -0.270 1.270 20 H -0.278 1.278 21 C 0.087 3.913 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.122 0.878 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.382 0.618 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.374 0.626 34 H 0.264 0.736 35 H 0.091 0.909 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -3.958 10.153 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.212 4.212 3 C 0.130 3.870 4 C -0.187 4.187 5 O -0.384 6.384 6 C -0.193 4.193 7 C 0.316 3.684 8 O -0.458 6.458 9 N -0.367 5.367 10 C -0.001 4.001 11 C 0.156 3.844 12 O -0.385 6.385 13 C -0.673 4.673 14 H 0.078 0.922 15 C -0.204 4.204 16 N -0.549 5.549 17 Si 0.934 3.066 18 H -0.209 1.209 19 H -0.196 1.196 20 H -0.204 1.204 21 C -0.036 4.036 22 H 0.123 0.877 23 H 0.109 0.891 24 H 0.140 0.860 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.233 0.767 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.222 0.778 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.819 -3.822 10.051 10.907 hybrid contribution -1.132 -0.098 0.202 1.154 sum -2.951 -3.920 10.254 11.367 Atomic orbital electron populations 1.23700 0.96323 1.01748 0.98243 1.23449 0.96972 0.98447 1.02355 1.20075 0.88046 0.84829 0.94013 1.21733 0.98714 1.03704 0.94547 1.86387 1.51315 1.49811 1.50865 1.22403 0.99621 1.05909 0.91379 1.20903 0.88508 0.75357 0.83676 1.90561 1.15787 1.53620 1.85869 1.50208 1.10695 1.70315 1.05532 1.23224 0.97790 1.00246 0.78800 1.20367 0.92532 0.79326 0.92199 1.86251 1.36742 1.20890 1.94573 1.22449 1.07567 1.21692 1.15565 0.92160 1.27079 0.93242 0.93706 1.06340 1.71057 1.37365 1.35433 1.11078 0.82953 0.75776 0.76804 0.71017 1.20909 1.19555 1.20384 1.24193 0.83250 1.01453 0.94701 0.87746 0.89128 0.85981 0.91332 0.91332 0.88766 0.76656 0.86292 0.87732 0.92097 0.88387 0.77751 0.92452 0.89120 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 12.63 67.78 0.86 -3.58 16 2 C -0.19 -5.09 7.41 25.65 0.19 -4.90 16 3 C 0.17 4.51 1.08 -11.54 -0.01 4.50 16 4 C -0.13 -2.58 8.82 71.98 0.64 -1.94 16 5 O -0.57 -17.77 11.94 -132.85 -1.59 -19.36 16 6 C -0.15 -4.26 4.75 29.85 0.14 -4.12 16 7 C 0.52 19.03 7.53 87.66 0.66 19.69 16 8 O -0.58 -22.96 12.69 13.09 0.17 -22.79 16 9 N -0.63 -24.82 3.61 -840.31 -3.03 -27.85 16 10 C 0.12 5.15 8.22 86.48 0.71 5.86 16 11 C 0.20 9.01 1.08 -10.87 -0.01 8.99 16 12 O -0.58 -27.99 13.46 -148.98 -2.01 -30.00 16 13 C -0.64 -31.37 8.56 25.60 0.22 -31.16 16 14 H 0.06 2.97 7.86 -2.91 -0.02 2.94 16 15 C 0.00 -0.08 5.24 84.66 0.44 0.37 16 16 N -0.91 -46.62 13.02 21.45 0.28 -46.34 16 17 Si 1.11 44.32 29.93 68.60 2.05 46.38 16 18 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 21 C 0.09 3.46 7.11 86.49 0.61 4.08 16 22 H 0.10 2.48 8.06 -2.91 -0.02 2.45 16 23 H 0.09 2.62 6.41 -2.91 -0.02 2.61 16 24 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.38 12.60 5.81 -74.05 -0.43 12.17 16 29 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.10 3.87 8.09 -2.39 -0.02 3.85 16 33 H 0.37 17.71 6.90 -74.06 -0.51 17.20 16 34 H 0.26 13.14 5.32 -92.71 -0.49 12.65 16 35 H 0.09 3.53 8.09 -2.39 -0.02 3.51 16 36 H 0.07 2.76 7.82 -2.39 -0.02 2.75 16 Total: -1.00 -57.89 299.65 0.75 -57.14 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: 0.42 Total: 45.03 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.45 Total: -2.21 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -2.75 Total: -74.19 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -3.43 Total: -72.14 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.05 Total: 46.38 kcal Total: -57.89 0.75 -57.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332022311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.038 kcal (2) G-P(sol) polarization free energy of solvation -57.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds