Wall clock time and date at job start Sun Mar 29 2020 23:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.20828 * 120.00024 * 228.79723 * 3 2 1 5 5 O 1.34231 * 120.00288 * 48.79800 * 3 2 1 6 6 C 1.45197 * 117.00287 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47191 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00246 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00086 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99810 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46826 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00106 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99877 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00411 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99770 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47311 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47033 * 119.99849 * 15 13 11 18 18 H 1.48507 * 109.46918 * 239.99464 * 15 13 11 19 19 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 20 20 C 1.53781 * 87.08260 * 220.02231 * 19 2 1 21 21 C 1.53786 * 87.17350 * 25.39213 * 20 19 2 22 22 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 23 23 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 24 24 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 25 25 H 1.09007 * 109.46789 * 300.00330 * 6 5 3 26 26 H 1.08995 * 109.47032 * 59.99862 * 6 5 3 27 27 H 0.96999 * 119.99860 * 359.97438 * 9 7 6 28 28 H 1.08998 * 109.47432 * 299.99118 * 10 9 7 29 29 H 1.08995 * 109.47475 * 60.00112 * 10 9 7 30 30 H 0.96991 * 120.00356 * 180.02562 * 14 13 11 31 31 H 1.09001 * 113.61250 * 105.47049 * 19 2 1 32 32 H 1.08997 * 113.61225 * 334.56890 * 19 2 1 33 33 H 1.09002 * 113.61445 * 139.98212 * 20 19 2 34 34 H 1.09002 * 113.61408 * 270.79943 * 20 19 2 35 35 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 36 36 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9850 1.6778 -0.7873 5 8 1.6702 2.3046 0.8746 6 6 2.2790 3.6215 0.8171 7 6 1.6579 4.5083 1.8653 8 8 0.7875 4.0735 2.5893 9 7 2.0690 5.7851 1.9975 10 6 1.4647 6.6473 3.0162 11 6 2.0967 8.0141 2.9565 12 1 2.8713 8.2197 2.2326 13 6 1.6868 9.0017 3.8269 14 7 0.7440 8.7512 4.7089 15 14 2.4707 10.6957 3.7534 16 1 3.4987 10.7194 2.6820 17 1 1.4276 11.7116 3.4618 18 1 3.1094 11.0027 5.0585 19 6 2.1460 -0.9281 -1.0601 20 6 3.1923 -1.3136 -0.0011 21 6 2.1479 -0.9296 1.0604 22 1 -0.3634 -1.0080 0.1995 23 1 -0.3634 0.6770 0.7732 24 1 -0.3633 0.3312 -0.9729 25 1 3.3497 3.5352 1.0026 26 1 2.1150 4.0548 -0.1695 27 1 2.7649 6.1330 1.4183 28 1 0.3941 6.7334 2.8309 29 1 1.6291 6.2142 4.0028 30 1 0.4553 9.4461 5.3209 31 1 2.5650 -0.3971 -1.9149 32 1 1.4945 -1.7523 -1.3505 33 1 3.4443 -2.3741 -0.0021 34 1 4.0717 -0.6696 -0.0014 35 1 1.4969 -1.7542 1.3508 36 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750534071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:45 Heat of formation + Delta-G solvation = -112.714890 kcal Electronic energy + Delta-G solvation = -18558.330495 eV Core-core repulsion = 15429.132177 eV Total energy + Delta-G solvation = -3129.198318 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.16786 -39.12853 -38.14588 -36.20579 -34.25855 -32.42287 -30.59161 -29.11849 -26.77408 -25.97477 -24.48166 -22.68391 -21.93026 -19.96032 -19.43671 -17.49757 -17.21544 -16.65555 -16.35485 -15.59982 -15.16921 -15.13974 -14.52471 -14.42418 -13.87329 -13.76529 -13.11108 -12.96379 -12.85248 -12.55109 -12.25977 -12.00997 -11.78025 -11.58419 -11.25296 -10.99937 -10.95205 -10.70075 -10.62794 -10.54353 -10.37645 -10.35450 -9.43476 -9.18642 -8.79885 -8.00102 -6.20837 -4.28229 2.07547 2.38389 3.16623 3.21645 3.28887 3.31952 3.93180 4.11116 4.23118 4.31682 4.52286 4.55282 4.77629 5.11543 5.15383 5.18132 5.22574 5.32960 5.37092 5.42974 5.50198 5.53488 5.65835 5.77889 5.80442 6.01850 6.08571 6.36238 7.21390 7.29693 7.44535 7.58354 7.69025 7.90693 8.48770 8.70106 8.95249 9.38299 10.89369 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.054707 B = 0.003451 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.697433 B = 8111.834684 C = 8349.870876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C 0.484 3.516 4 O -0.508 6.508 5 O -0.323 6.323 6 C 0.047 3.953 7 C 0.500 3.500 8 O -0.534 6.534 9 N -0.707 5.707 10 C 0.251 3.749 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.118 4.118 20 C -0.145 4.145 21 C -0.120 4.120 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.393 0.607 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.266 0.734 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 -17.947 -10.387 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C 0.327 3.673 4 O -0.396 6.396 5 O -0.238 6.238 6 C -0.030 4.030 7 C 0.283 3.717 8 O -0.411 6.411 9 N -0.357 5.357 10 C 0.131 3.869 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.155 4.155 20 C -0.183 4.183 21 C -0.158 4.158 22 H 0.089 0.911 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.226 0.774 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.665 -18.024 -9.905 20.738 hybrid contribution 0.823 1.350 -0.316 1.612 sum 3.488 -16.674 -10.221 19.866 Atomic orbital electron populations 1.21743 0.91102 1.03315 1.03290 1.21621 0.97555 0.88198 1.01238 1.23069 0.79830 0.86928 0.77470 1.90641 1.29992 1.80398 1.38589 1.86558 1.60894 1.21214 1.55109 1.22882 0.98453 0.80929 1.00765 1.19880 0.83954 0.83159 0.84748 1.90708 1.31200 1.74057 1.45138 1.46366 1.40565 1.10359 1.38387 1.19182 0.94143 0.87651 0.85971 1.21247 1.22161 0.95553 1.19350 0.91710 1.24957 0.94908 0.99299 0.94841 1.69978 1.28367 1.34103 1.19742 0.86336 0.79130 0.83236 0.78065 1.19594 1.20756 1.20759 1.22954 0.97713 0.97863 0.96995 1.22921 0.97512 1.01939 0.95886 1.23036 0.98027 0.98187 0.96508 0.91126 0.90516 0.91960 0.88584 0.88545 0.77431 0.95238 0.95247 0.92413 0.89934 0.88712 0.90764 0.89792 0.88330 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.14 37.15 0.34 -0.96 16 2 C -0.08 -0.90 1.33 -154.76 -0.21 -1.11 16 3 C 0.48 6.82 6.77 36.01 0.24 7.06 16 4 O -0.51 -7.87 15.50 -18.75 -0.29 -8.16 16 5 O -0.32 -5.23 9.38 -45.91 -0.43 -5.66 16 6 C 0.05 0.73 5.94 36.00 0.21 0.95 16 7 C 0.50 10.09 7.91 -10.99 -0.09 10.00 16 8 O -0.53 -13.08 16.50 -14.10 -0.23 -13.32 16 9 N -0.71 -14.67 5.55 -61.48 -0.34 -15.01 16 10 C 0.25 6.56 5.43 -5.19 -0.03 6.54 16 11 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 12 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 14 N -0.88 -25.82 13.29 55.43 0.74 -25.09 16 15 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.12 -1.03 7.02 -25.92 -0.18 -1.21 16 20 C -0.15 -1.23 7.73 -25.92 -0.20 -1.43 16 21 C -0.12 -1.08 7.23 -25.82 -0.19 -1.27 16 22 H 0.07 0.50 7.95 -51.93 -0.41 0.09 16 23 H 0.08 0.86 7.85 -51.93 -0.41 0.46 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.10 1.30 8.13 -51.92 -0.42 0.88 16 26 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 27 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.08 0.82 7.43 -51.93 -0.39 0.43 16 32 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.10 0.68 7.97 -51.93 -0.41 0.27 16 36 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -32.78 312.84 -6.66 -39.45 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.29 Total: 2.12 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.51 Total: 5.31 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.40 Total: -40.09 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.95 Total: -27.14 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.78 -6.66 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750534071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.269 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds