Wall clock time and date at job start Sun Mar 29 2020 23:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.20828 * 120.00024 * 228.79723 * 3 2 1 5 5 O 1.34231 * 120.00288 * 48.79800 * 3 2 1 6 6 C 1.45197 * 117.00287 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47191 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00246 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00086 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99810 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.46826 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00106 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99877 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00411 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99770 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47311 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47033 * 119.99849 * 15 13 11 18 18 H 1.48507 * 109.46918 * 239.99464 * 15 13 11 19 19 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 20 20 C 1.53781 * 87.08260 * 220.02231 * 19 2 1 21 21 C 1.53786 * 87.17350 * 25.39213 * 20 19 2 22 22 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 23 23 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 24 24 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 25 25 H 1.09007 * 109.46789 * 300.00330 * 6 5 3 26 26 H 1.08995 * 109.47032 * 59.99862 * 6 5 3 27 27 H 0.96999 * 119.99860 * 359.97438 * 9 7 6 28 28 H 1.08998 * 109.47432 * 299.99118 * 10 9 7 29 29 H 1.08995 * 109.47475 * 60.00112 * 10 9 7 30 30 H 0.96991 * 120.00356 * 180.02562 * 14 13 11 31 31 H 1.09001 * 113.61250 * 105.47049 * 19 2 1 32 32 H 1.08997 * 113.61225 * 334.56890 * 19 2 1 33 33 H 1.09002 * 113.61445 * 139.98212 * 20 19 2 34 34 H 1.09002 * 113.61408 * 270.79943 * 20 19 2 35 35 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 36 36 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9850 1.6778 -0.7873 5 8 1.6702 2.3046 0.8746 6 6 2.2790 3.6215 0.8171 7 6 1.6579 4.5083 1.8653 8 8 0.7875 4.0735 2.5893 9 7 2.0690 5.7851 1.9975 10 6 1.4647 6.6473 3.0162 11 6 2.0967 8.0141 2.9565 12 1 2.8713 8.2197 2.2326 13 6 1.6868 9.0017 3.8269 14 7 0.7440 8.7512 4.7089 15 14 2.4707 10.6957 3.7534 16 1 3.4987 10.7194 2.6820 17 1 1.4276 11.7116 3.4618 18 1 3.1094 11.0027 5.0585 19 6 2.1460 -0.9281 -1.0601 20 6 3.1923 -1.3136 -0.0011 21 6 2.1479 -0.9296 1.0604 22 1 -0.3634 -1.0080 0.1995 23 1 -0.3634 0.6770 0.7732 24 1 -0.3633 0.3312 -0.9729 25 1 3.3497 3.5352 1.0026 26 1 2.1150 4.0548 -0.1695 27 1 2.7649 6.1330 1.4183 28 1 0.3941 6.7334 2.8309 29 1 1.6291 6.2142 4.0028 30 1 0.4553 9.4461 5.3209 31 1 2.5650 -0.3971 -1.9149 32 1 1.4945 -1.7523 -1.3505 33 1 3.4443 -2.3741 -0.0021 34 1 4.0717 -0.6696 -0.0014 35 1 1.4969 -1.7542 1.3508 36 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750534071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:45 Heat of formation + Delta-G solvation = -134.144222 kcal Electronic energy + Delta-G solvation = -18559.259741 eV Core-core repulsion = 15429.132177 eV Total energy + Delta-G solvation = -3130.127564 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.21519 -40.63675 -39.28020 -37.40757 -36.20879 -34.43829 -31.49984 -30.58784 -28.56912 -26.66759 -25.54483 -24.50139 -22.88540 -21.68475 -20.46242 -19.16523 -18.43761 -17.87300 -17.73156 -17.11833 -16.94704 -16.34581 -16.11774 -15.58326 -15.08317 -14.69920 -14.54217 -14.30697 -14.08636 -13.87320 -13.66690 -13.41233 -13.13983 -12.92704 -12.76613 -12.31594 -12.23743 -12.03676 -11.90367 -11.48919 -11.43886 -11.28543 -11.27607 -10.92711 -10.84557 -9.96034 -8.31055 -6.47762 0.99077 1.20655 1.44064 1.44277 1.51323 1.58183 2.32183 2.53206 3.04289 3.34318 3.49407 3.56523 3.71721 3.85479 3.93173 3.99452 4.02758 4.47592 4.70612 4.77932 4.80991 4.81242 5.02620 5.04347 5.07125 5.11712 5.19745 5.19790 5.28991 5.39536 5.46673 5.60868 5.80367 6.53130 6.61295 6.75381 7.18252 7.32808 8.81351 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.054707 B = 0.003451 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.697433 B = 8111.834684 C = 8349.870876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C 0.481 3.519 4 O -0.525 6.525 5 O -0.344 6.344 6 C 0.058 3.942 7 C 0.500 3.500 8 O -0.582 6.582 9 N -0.698 5.698 10 C 0.266 3.734 11 C -0.557 4.557 12 H 0.086 0.914 13 C 0.004 3.996 14 N -0.930 5.930 15 Si 0.986 3.014 16 H -0.253 1.253 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.108 4.108 20 C -0.143 4.143 21 C -0.117 4.117 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.412 0.588 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.269 0.731 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.381 -18.663 -11.975 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C 0.326 3.674 4 O -0.414 6.414 5 O -0.259 6.259 6 C -0.019 4.019 7 C 0.286 3.714 8 O -0.463 6.463 9 N -0.350 5.350 10 C 0.144 3.856 11 C -0.595 4.595 12 H 0.104 0.896 13 C -0.195 4.195 14 N -0.568 5.568 15 Si 0.809 3.191 16 H -0.177 1.177 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.145 4.145 20 C -0.180 4.180 21 C -0.154 4.154 22 H 0.118 0.882 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.249 0.751 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.929 -18.755 -11.539 22.368 hybrid contribution 0.416 1.498 0.176 1.565 sum 4.344 -17.256 -11.363 21.113 Atomic orbital electron populations 1.21750 0.90237 1.04482 1.02629 1.21889 0.98213 0.86406 1.03298 1.23849 0.79497 0.87606 0.76496 1.90623 1.30841 1.80794 1.39126 1.86567 1.61574 1.21564 1.56215 1.22747 0.98948 0.80478 0.99717 1.20648 0.82927 0.83033 0.84807 1.90684 1.33416 1.74933 1.47237 1.46046 1.40860 1.10395 1.37669 1.18645 0.92558 0.88749 0.85685 1.21637 1.22491 0.95536 1.19792 0.89615 1.26057 0.95252 1.04047 0.94178 1.70132 1.30102 1.35806 1.20801 0.85096 0.78336 0.77175 0.78514 1.17651 1.20462 1.20469 1.23014 0.97841 0.97835 0.95844 1.22895 0.96655 1.03011 0.95475 1.23135 0.98430 0.98270 0.95602 0.88206 0.93002 0.91645 0.86055 0.85991 0.75144 0.98910 0.98926 0.92166 0.91380 0.85663 0.88328 0.91785 0.85602 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.14 71.98 0.66 -1.66 16 2 C -0.10 -1.91 1.33 -52.34 -0.07 -1.98 16 3 C 0.48 13.23 6.77 71.24 0.48 13.71 16 4 O -0.52 -15.78 15.50 21.96 0.34 -15.44 16 5 O -0.34 -11.09 9.38 -45.07 -0.42 -11.51 16 6 C 0.06 1.75 5.94 71.23 0.42 2.17 16 7 C 0.50 20.49 7.91 87.66 0.69 21.18 16 8 O -0.58 -29.73 16.50 15.76 0.26 -29.47 16 9 N -0.70 -29.24 5.55 -466.80 -2.59 -31.83 16 10 C 0.27 14.46 5.43 85.63 0.46 14.92 16 11 C -0.56 -29.91 9.28 25.60 0.24 -29.67 16 12 H 0.09 4.15 7.60 -2.91 -0.02 4.12 16 13 C 0.00 0.24 5.46 84.65 0.46 0.71 16 14 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 15 Si 0.99 41.94 29.54 68.60 2.03 43.97 16 16 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 C -0.11 -1.61 7.02 31.12 0.22 -1.40 16 20 C -0.14 -2.12 7.73 31.12 0.24 -1.88 16 21 C -0.12 -1.88 7.23 31.18 0.23 -1.65 16 22 H 0.10 1.12 7.95 -2.39 -0.02 1.10 16 23 H 0.05 1.16 7.85 -2.39 -0.02 1.14 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.12 3.09 8.13 -2.38 -0.02 3.07 16 26 H 0.12 3.10 8.13 -2.39 -0.02 3.08 16 27 H 0.41 13.95 8.32 -92.71 -0.77 13.17 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.07 1.24 7.43 -2.39 -0.02 1.22 16 32 H 0.13 1.12 8.10 -2.39 -0.02 1.10 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.20 8.08 -2.39 -0.02 1.19 16 35 H 0.13 1.33 7.97 -2.39 -0.02 1.31 16 36 H 0.06 1.16 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -73.61 312.84 4.24 -69.37 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.31 Total: 15.78 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 4.04 Total: 14.46 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -2.30 Total: -87.17 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: 0.18 Total: -56.41 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -73.61 4.24 -69.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750534071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.775 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds