Wall clock time and date at job start Sun Mar 29 2020 23:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86800 * 119.99953 * 2 1 4 4 H 1.48503 * 109.46524 * 239.99495 * 3 2 1 5 5 H 1.48496 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47386 * 119.99902 * 3 2 1 7 7 C 1.40043 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99973 * 180.02562 * 7 2 1 9 9 C 1.46373 * 120.00217 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99749 * 8.89308 * 9 7 2 11 11 N 1.34775 * 120.00277 * 188.89084 * 9 7 2 12 12 C 1.46918 * 120.63227 * 6.64060 * 11 9 7 13 13 C 1.53194 * 108.78088 * 126.36793 * 12 11 9 14 14 C 1.53105 * 109.32736 * 54.63651 * 13 12 11 15 15 C 1.53041 * 109.50305 * 298.65812 * 14 13 12 16 16 C 1.46930 * 120.63081 * 186.62036 * 11 9 7 17 17 H 1.08993 * 109.58924 * 113.84254 * 16 11 9 18 18 C 1.53004 * 109.58853 * 353.41307 * 16 11 9 19 19 O 1.43748 * 109.63388 * 187.27847 * 18 16 11 20 20 C 1.44781 * 104.81603 * 215.80878 * 19 18 16 21 21 C 1.54915 * 101.72081 * 36.10758 * 20 19 18 22 22 O 1.43366 * 109.62624 * 67.91312 * 18 16 11 23 23 H 0.97003 * 120.00062 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.58864 * 246.15607 * 12 11 9 25 25 H 1.09004 * 109.58599 * 6.58206 * 12 11 9 26 26 H 1.08995 * 109.50158 * 174.58693 * 13 12 11 27 27 H 1.08999 * 109.49275 * 294.65650 * 13 12 11 28 28 H 1.09000 * 109.50459 * 178.63617 * 14 13 12 29 29 H 1.08999 * 109.45152 * 58.65316 * 14 13 12 30 30 H 1.08998 * 109.50187 * 301.38496 * 15 14 13 31 31 H 1.09004 * 109.49953 * 181.31454 * 15 14 13 32 32 H 1.09004 * 109.62634 * 307.52484 * 18 16 11 33 33 H 1.08996 * 110.97944 * 277.99417 * 20 19 18 34 34 H 1.09003 * 110.97685 * 154.20703 * 20 19 18 35 35 H 1.08999 * 110.69415 * 206.04653 * 21 20 19 36 36 H 1.08993 * 110.70158 * 82.82797 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6962 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0692 -2.4868 -0.1628 11 7 1.9367 -3.6406 0.1814 12 6 3.3654 -3.6421 0.5237 13 6 3.5685 -4.4805 1.7896 14 6 2.9721 -5.8742 1.5755 15 6 1.4695 -5.7520 1.3121 16 6 1.2427 -4.9280 0.0406 17 1 1.6414 -5.4659 -0.8194 18 6 -0.2555 -4.6847 -0.1524 19 8 -0.9566 -5.9392 -0.1199 20 6 -2.0272 -5.7901 -1.0831 21 6 -1.3466 -4.9336 -2.1800 22 8 -0.4823 -4.0617 -1.4236 23 1 -0.4850 0.8401 -0.0004 24 1 3.9374 -4.0752 -0.2970 25 1 3.6988 -2.6202 0.7048 26 1 4.6343 -4.5694 2.0001 27 1 3.0708 -3.9966 2.6300 28 1 3.1365 -6.4811 2.4658 29 1 3.4535 -6.3474 0.7197 30 1 0.9911 -5.2565 2.1568 31 1 1.0408 -6.7458 1.1827 32 1 -0.6271 -4.0391 0.6434 33 1 -2.8749 -5.2625 -0.6459 34 1 -2.3340 -6.7584 -1.4786 35 1 -2.0875 -4.3563 -2.7330 36 1 -0.7649 -5.5623 -2.8541 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772694523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:20 Heat of formation + Delta-G solvation = -107.277782 kcal Electronic energy + Delta-G solvation = -20633.339143 eV Core-core repulsion = 17504.376595 eV Total energy + Delta-G solvation = -3128.962547 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87732 -38.15265 -35.73641 -34.05924 -32.63261 -31.63005 -31.29110 -28.70185 -26.46590 -24.73477 -23.42367 -22.48375 -21.37776 -20.28479 -18.89349 -16.76192 -16.40822 -16.07882 -15.21503 -15.17270 -14.34362 -14.22678 -14.00967 -13.76188 -13.41831 -13.11019 -12.82644 -12.35567 -12.22742 -11.97738 -11.78983 -11.43953 -11.15530 -10.96461 -10.92349 -10.76207 -10.47837 -10.37167 -10.25878 -10.18417 -9.79134 -9.58370 -8.83070 -8.61666 -7.23806 -7.09620 -6.12681 -4.58804 3.16987 3.22220 3.23480 3.97498 4.17306 4.49324 4.65619 4.88532 5.14110 5.29934 5.32825 5.38720 5.44364 5.57959 5.72996 5.82633 5.85624 5.94874 5.96027 6.09975 6.12839 6.21373 6.33063 6.38718 6.43950 6.51526 6.55543 6.61923 6.75079 7.01314 7.48095 7.61091 8.01297 8.18519 8.40259 9.06528 9.47256 10.61967 10.80830 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.020086 B = 0.009274 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.689254 B = 3018.403533 C = 4163.178524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.090 3.910 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.557 3.443 10 O -0.539 6.539 11 N -0.636 5.636 12 C 0.125 3.875 13 C -0.136 4.136 14 C -0.113 4.113 15 C -0.121 4.121 16 C 0.144 3.856 17 H 0.051 0.949 18 C 0.251 3.749 19 O -0.403 6.403 20 C 0.024 3.976 21 C 0.003 3.997 22 O -0.322 6.322 23 H 0.268 0.732 24 H 0.040 0.960 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -9.275 0.411 9.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.088 0.912 9 C 0.363 3.637 10 O -0.421 6.421 11 N -0.376 5.376 12 C 0.000 4.000 13 C -0.175 4.175 14 C -0.151 4.151 15 C -0.160 4.160 16 C 0.039 3.961 17 H 0.069 0.931 18 C 0.157 3.843 19 O -0.324 6.324 20 C -0.053 4.053 21 C -0.074 4.074 22 O -0.242 6.242 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.457 -9.121 0.386 9.245 hybrid contribution 0.483 0.683 -0.137 0.848 sum 1.940 -8.438 0.249 8.662 Atomic orbital electron populations 1.69983 1.06921 1.27256 1.35439 1.25672 0.94591 1.00079 0.92651 0.86494 0.79883 0.81352 0.79379 1.19346 1.20645 1.19362 1.20887 0.93428 0.89223 1.54367 0.91207 1.18264 0.87092 0.82069 0.76273 1.90602 1.14184 1.83824 1.53511 1.48249 1.08989 1.04193 1.76166 1.21399 0.83247 1.01090 0.94221 1.21982 0.99833 0.96010 0.99667 1.21474 0.95856 0.97059 1.00718 1.21798 0.96090 0.99872 0.98255 1.21158 0.91858 0.86829 0.96275 0.93080 1.24301 0.91108 0.78777 0.90074 1.89132 1.43500 1.38579 1.61208 1.24168 0.91617 1.00501 0.89051 1.24105 0.94208 0.93601 0.95488 1.89560 1.67517 1.41215 1.25903 0.92157 0.94220 0.88815 0.92061 0.91727 0.92591 0.92487 0.91815 0.91397 0.87473 0.91323 0.88911 0.89561 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.62 11.87 55.55 0.66 -21.96 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 3 Si 0.90 20.08 29.56 -169.99 -5.02 15.06 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.54 -15.10 8.69 -35.63 -0.31 -15.41 16 8 H 0.07 1.79 5.97 -52.49 -0.31 1.47 16 9 C 0.56 15.60 7.30 -12.99 -0.09 15.51 16 10 O -0.54 -16.44 9.25 -20.12 -0.19 -16.63 16 11 N -0.64 -14.72 2.97 -166.86 -0.50 -15.21 16 12 C 0.12 2.38 6.28 -3.71 -0.02 2.35 16 13 C -0.14 -2.15 6.08 -26.58 -0.16 -2.31 16 14 C -0.11 -1.69 5.89 -26.66 -0.16 -1.84 16 15 C -0.12 -2.12 5.05 -26.61 -0.13 -2.26 16 16 C 0.14 3.02 2.98 -67.59 -0.20 2.82 16 17 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 18 C 0.25 5.64 2.67 37.16 0.10 5.74 16 19 O -0.40 -7.77 10.55 -59.04 -0.62 -8.39 16 20 C 0.02 0.37 7.95 38.17 0.30 0.68 16 21 C 0.00 0.06 8.07 38.17 0.31 0.37 16 22 O -0.32 -7.81 8.35 -68.02 -0.57 -8.38 16 23 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.86 5.52 -51.93 -0.29 1.58 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.10 7.74 -51.93 -0.40 0.70 16 32 H 0.11 2.80 6.43 -51.93 -0.33 2.46 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 283.85 15.07 4.28 4.28 Total: -1.00 -32.89 283.85 -7.55 -40.43 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.12 Total: 2.79 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.47 Total: 8.02 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.16 Total: -37.18 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.38 Total: -33.40 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.89 -7.55 -40.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772694523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.845 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds