Wall clock time and date at job start Sun Mar 29 2020 23:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.47490 * 125.66173 * 359.68873 * 13 11 10 15 15 C 1.55290 * 104.77967 * 155.90547 * 14 13 11 16 16 C 1.54440 * 101.41331 * 36.62831 * 15 14 13 17 17 C 1.47200 * 125.67014 * 180.02562 * 13 11 10 18 18 O 1.42932 * 110.40477 * 83.97991 * 16 15 14 19 19 C 1.44978 * 104.55710 * 98.62391 * 18 16 15 20 20 C 1.54987 * 101.84435 * 35.27846 * 19 18 16 21 21 O 1.42541 * 110.63485 * 205.74881 * 16 15 14 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09000 * 110.35772 * 274.86732 * 14 13 11 28 28 H 1.09004 * 110.35505 * 37.15617 * 14 13 11 29 29 H 1.09001 * 111.23243 * 278.53475 * 15 14 13 30 30 H 1.08997 * 110.93749 * 154.59788 * 15 14 13 31 31 H 1.08999 * 109.91070 * 300.90834 * 17 13 11 32 32 H 1.09007 * 109.91185 * 61.98309 * 17 13 11 33 33 H 1.08996 * 110.95555 * 277.14473 * 19 18 16 34 34 H 1.08998 * 110.95887 * 153.41237 * 19 18 16 35 35 H 1.09000 * 110.69104 * 206.50794 * 20 19 18 36 36 H 1.08996 * 110.68960 * 83.31610 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 8 6.1349 -1.5863 -0.0036 13 7 6.2024 -3.8038 -0.0028 14 6 5.5946 -5.1476 0.0041 15 6 6.6768 -6.0751 -0.6125 16 6 7.9715 -5.4540 -0.0439 17 6 7.6672 -3.9492 -0.0035 18 8 8.2313 -5.9576 1.2683 19 6 9.2100 -7.0083 1.0682 20 6 10.0555 -6.4374 -0.0986 21 8 9.0791 -5.7332 -0.8966 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8907 27 1 5.3649 -5.4547 1.0244 28 1 4.6928 -5.1591 -0.6082 29 1 6.6651 -6.0259 -1.7013 30 1 6.5519 -7.1018 -0.2684 31 1 8.0882 -3.4618 -0.8828 32 1 8.0846 -3.5071 0.9012 33 1 8.7266 -7.9414 0.7790 34 1 9.8206 -7.1474 1.9603 35 1 10.5133 -7.2431 -0.6726 36 1 10.8145 -5.7506 0.2760 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812499554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:25 Heat of formation + Delta-G solvation = -145.477359 kcal Electronic energy + Delta-G solvation = -19158.168881 eV Core-core repulsion = 16027.549876 eV Total energy + Delta-G solvation = -3130.619005 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.08566 -40.60491 -37.78892 -36.20162 -35.58290 -33.45403 -32.23944 -30.68894 -29.26009 -27.54599 -24.93683 -24.03833 -22.95212 -22.00149 -20.33423 -19.21263 -18.56076 -18.06531 -17.38219 -16.98635 -16.43917 -16.31862 -16.26027 -15.54984 -15.37870 -14.77453 -14.76395 -14.45210 -13.94989 -13.94605 -13.66558 -13.56211 -13.29938 -12.96970 -12.91334 -12.65364 -12.30708 -12.08833 -11.98359 -11.78117 -11.41206 -11.21401 -10.94451 -10.78403 -10.68126 -9.80859 -8.31889 -6.34691 1.32834 1.34681 1.50149 1.56072 1.75408 2.34850 2.40616 2.77403 3.03676 3.25628 3.40444 3.66487 3.84454 4.06605 4.09798 4.17062 4.25926 4.33903 4.35485 4.44847 4.51593 4.64098 4.65800 4.75156 4.81368 4.91850 4.93711 4.99821 5.19167 5.34048 5.41201 5.59065 6.03720 6.22540 6.35401 6.70875 7.09281 7.30650 8.83666 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.053173 B = 0.004134 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.460773 B = 6771.003615 C = 7056.825322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.936 3.064 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.005 3.995 10 C -0.107 4.107 11 C 0.528 3.472 12 O -0.586 6.586 13 N -0.620 5.620 14 C 0.095 3.905 15 C -0.141 4.141 16 C 0.254 3.746 17 C 0.100 3.900 18 O -0.378 6.378 19 C 0.010 3.990 20 C 0.010 3.990 21 O -0.382 6.382 22 H 0.268 0.732 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.667 -19.970 0.343 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.071 0.929 9 C -0.033 4.033 10 C -0.146 4.146 11 C 0.319 3.681 12 O -0.466 6.466 13 N -0.355 5.355 14 C -0.026 4.026 15 C -0.179 4.179 16 C 0.175 3.825 17 C -0.024 4.024 18 O -0.299 6.299 19 C -0.065 4.065 20 C -0.065 4.065 21 O -0.303 6.303 22 H 0.077 0.923 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.720 -19.117 0.326 28.194 hybrid contribution 0.140 1.037 0.087 1.050 sum 20.860 -18.080 0.414 27.608 Atomic orbital electron populations 1.70013 1.07683 1.28111 1.52423 1.25765 0.95487 1.02723 0.94242 0.85861 0.79190 0.79677 0.79188 1.19295 1.20161 1.18866 1.21385 0.90943 0.93857 1.50407 0.92879 1.19241 0.94215 0.93488 0.96388 1.21468 0.87988 1.00133 1.05052 1.21079 0.91047 0.81611 0.74327 1.90636 1.71421 1.32565 1.51972 1.48505 1.06626 1.06843 1.73574 1.22697 0.97714 0.79445 1.02769 1.23370 0.91412 1.00680 1.02392 1.23391 0.88995 0.91624 0.78479 1.21953 0.81999 0.95869 1.02583 1.89244 1.62329 1.52623 1.25708 1.24789 0.89552 0.91449 1.00706 1.24605 0.91854 0.97357 0.92689 1.88875 1.28890 1.77626 1.34897 0.92319 0.97284 0.97267 0.87943 0.87647 0.89602 0.88091 0.88208 0.86142 0.90531 0.91554 0.88295 0.85055 0.85089 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.34 13.96 21.45 0.30 -59.04 16 2 C 0.02 0.94 5.47 84.65 0.46 1.41 16 3 Si 0.94 47.54 27.47 68.60 1.88 49.42 16 4 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.26 -13.47 6.54 99.48 0.65 -12.82 16 7 C -0.53 -30.89 9.66 25.60 0.25 -30.64 16 8 H 0.05 3.24 7.99 -2.91 -0.02 3.22 16 9 C 0.00 0.24 3.33 29.85 0.10 0.34 16 10 C -0.11 -4.27 4.64 29.85 0.14 -4.13 16 11 C 0.53 20.88 7.85 87.66 0.69 21.57 16 12 O -0.59 -28.25 16.31 -3.02 -0.05 -28.30 16 13 N -0.62 -18.96 3.33 -811.86 -2.71 -21.66 16 14 C 0.10 2.02 6.71 86.98 0.58 2.61 16 15 C -0.14 -2.35 6.52 31.87 0.21 -2.14 16 16 C 0.25 5.25 1.27 31.28 0.04 5.29 16 17 C 0.10 2.81 6.43 86.44 0.56 3.36 16 18 O -0.38 -7.32 11.05 -126.23 -1.40 -8.72 16 19 C 0.01 0.10 7.96 72.66 0.58 0.68 16 20 C 0.01 0.11 8.08 72.66 0.59 0.70 16 21 O -0.38 -7.37 10.94 -126.23 -1.38 -8.75 16 22 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 23 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 24 H 0.01 0.48 7.53 -2.39 -0.02 0.46 16 25 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 26 H 0.11 3.78 7.85 -2.39 -0.02 3.76 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.10 1.91 7.48 -2.39 -0.02 1.89 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 32 H 0.07 2.02 8.07 -2.38 -0.02 2.00 16 33 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.13 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -77.77 299.32 1.85 -75.92 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.01 Total: 2.09 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 4.19 Total: -0.97 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -2.41 Total: -80.70 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -2.83 Total: -45.76 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.88 Total: 49.42 kcal Total: -77.77 1.85 -75.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812499554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.559 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds