Wall clock time and date at job start Sun Mar 29 2020 23:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00129 * 2 1 4 4 H 1.48498 * 109.47232 * 269.99969 * 3 2 1 5 5 H 1.48498 * 109.47206 * 30.00193 * 3 2 1 6 6 H 1.48506 * 109.46957 * 149.99967 * 3 2 1 7 7 C 1.37874 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00005 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47531 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47288 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00450 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99901 * 180.02562 * 11 10 9 14 14 C 1.45202 * 116.99973 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47079 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47601 * 64.99534 * 15 14 13 17 17 C 1.46768 * 124.34879 * 89.99607 * 16 15 14 18 18 C 1.54480 * 105.55098 * 197.08340 * 17 16 15 19 19 C 1.54631 * 101.76472 * 334.54015 * 18 17 16 20 20 C 1.34621 * 124.47196 * 270.02849 * 16 15 14 21 21 O 1.21286 * 124.90539 * 359.55259 * 20 16 15 22 22 H 0.97002 * 119.99340 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47279 * 59.99832 * 9 7 2 24 24 H 1.09001 * 109.46873 * 299.99670 * 9 7 2 25 25 H 1.09000 * 109.47228 * 59.99156 * 10 9 7 26 26 H 1.09001 * 109.46712 * 299.99695 * 10 9 7 27 27 H 1.08998 * 109.47371 * 60.00044 * 14 13 11 28 28 H 1.08996 * 109.47060 * 299.99418 * 14 13 11 29 29 H 1.09002 * 109.47341 * 304.99655 * 15 14 13 30 30 H 1.08998 * 109.47560 * 184.99535 * 15 14 13 31 31 H 1.09002 * 110.24468 * 78.03845 * 17 16 15 32 32 H 1.09002 * 110.24463 * 316.12602 * 17 16 15 33 33 H 1.08995 * 110.97082 * 92.66028 * 18 17 16 34 34 H 1.09001 * 110.96924 * 216.42557 * 18 17 16 35 35 H 1.09000 * 110.48694 * 143.47575 * 19 18 17 36 36 H 1.08994 * 110.49106 * 266.12244 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6367 -0.0014 11 6 5.5285 -2.6367 -0.0014 12 8 6.1327 -1.5903 -0.0009 13 8 6.1996 -3.7991 -0.0031 14 6 7.6496 -3.7232 -0.0025 15 6 8.2344 -5.1370 -0.0039 16 7 7.8820 -5.8100 -1.2566 17 6 8.6978 -5.7700 -2.4760 18 6 7.7588 -6.2193 -3.6174 19 6 6.7242 -7.0788 -2.8546 20 6 6.7689 -6.5446 -1.4399 21 8 5.9244 -6.7480 -0.5935 22 1 -0.4849 0.8401 0.0004 23 1 3.8745 -0.6809 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.6585 -3.1496 -0.8920 26 1 3.6579 -3.1514 0.8880 27 1 7.9853 -3.1925 0.8885 28 1 7.9859 -3.1897 -0.8915 29 1 7.8283 -5.6991 0.8371 30 1 9.3192 -5.0817 0.0860 31 1 9.5405 -6.4560 -2.3887 32 1 9.0546 -4.7563 -2.6580 33 1 7.2807 -5.3612 -4.0897 34 1 8.2969 -6.8178 -4.3525 35 1 5.7298 -6.9466 -3.2810 36 1 7.0122 -8.1298 -2.8747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812613864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:16 Heat of formation + Delta-G solvation = -129.227547 kcal Electronic energy + Delta-G solvation = -18873.919316 eV Core-core repulsion = 15744.004956 eV Total energy + Delta-G solvation = -3129.914361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.52941 -39.83675 -36.59930 -36.19375 -33.59327 -33.45025 -31.38066 -29.31131 -27.75051 -26.42566 -23.62413 -22.20553 -21.58386 -19.74658 -19.52948 -17.53232 -17.15028 -16.91604 -16.44336 -16.00552 -15.47465 -15.24561 -14.25024 -14.07089 -13.90712 -13.64653 -13.51658 -13.01777 -12.74822 -12.68599 -12.59895 -12.14684 -11.82227 -11.67110 -11.38140 -11.26608 -10.99415 -10.43971 -10.27330 -10.11792 -9.90506 -9.80025 -9.66147 -9.21951 -8.90115 -8.52759 -6.04023 -4.03504 2.55050 2.73774 2.79298 3.11182 3.35731 3.42457 3.52033 4.15147 4.21161 4.48700 4.51808 4.74290 4.78634 4.87806 5.00382 5.12567 5.21859 5.27267 5.30523 5.42740 5.51405 5.56671 5.66120 5.70475 6.07134 6.10492 6.33756 6.55421 6.85077 6.97921 7.27358 7.35121 7.74394 8.13536 8.27576 8.51481 8.99134 9.57768 11.08724 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.031424 B = 0.004388 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.830056 B = 6379.296696 C = 6689.154945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.095 4.095 11 C 0.458 3.542 12 O -0.517 6.517 13 O -0.349 6.349 14 C 0.044 3.956 15 C 0.130 3.870 16 N -0.625 5.625 17 C 0.101 3.899 18 C -0.133 4.133 19 C -0.156 4.156 20 C 0.517 3.483 21 O -0.511 6.511 22 H 0.264 0.736 23 H 0.025 0.975 24 H 0.020 0.980 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.110 -13.778 -6.128 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.038 4.038 10 C -0.133 4.133 11 C 0.302 3.698 12 O -0.405 6.405 13 O -0.266 6.266 14 C -0.032 4.032 15 C 0.008 3.992 16 N -0.361 5.361 17 C -0.022 4.022 18 C -0.170 4.170 19 C -0.196 4.196 20 C 0.305 3.695 21 O -0.385 6.385 22 H 0.074 0.926 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.723 -13.438 -5.593 25.324 hybrid contribution 0.629 1.122 -0.071 1.288 sum 21.352 -12.315 -5.664 25.291 Atomic orbital electron populations 1.69913 1.06260 1.27001 1.50775 1.24951 0.94715 0.99143 0.94282 0.86802 0.80583 0.83459 0.78730 1.20203 1.21303 1.18643 1.21052 0.88875 0.94828 1.51606 0.90625 1.19472 0.96905 0.89677 0.97779 1.21514 0.83591 1.03274 1.04874 1.24744 0.92823 0.80968 0.71255 1.90601 1.70756 1.33215 1.45907 1.86698 1.20060 1.35523 1.84340 1.23401 0.79334 0.97796 1.02667 1.21444 0.99704 0.91428 0.86625 1.48279 1.23524 1.51780 1.12508 1.22068 0.94025 1.02137 0.83942 1.22588 0.96838 1.00574 0.97040 1.22333 1.02335 1.01196 0.93717 1.20929 0.80654 0.77868 0.90090 1.90769 1.39795 1.58901 1.49032 0.92636 0.95661 0.96187 0.88523 0.88314 0.90453 0.91426 0.88785 0.88349 0.91121 0.90561 0.89845 0.89223 0.87863 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 22.59 27.47 -169.99 -4.67 17.92 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.69 6.54 56.52 0.37 -6.32 16 7 C -0.53 -15.33 9.66 -34.44 -0.33 -15.67 16 8 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 9 C 0.00 -0.02 3.33 -27.88 -0.09 -0.11 16 10 C -0.09 -2.02 5.75 -27.88 -0.16 -2.18 16 11 C 0.46 9.16 7.96 36.00 0.29 9.45 16 12 O -0.52 -11.43 15.73 -18.75 -0.29 -11.72 16 13 O -0.35 -6.07 9.80 -39.26 -0.38 -6.46 16 14 C 0.04 0.56 5.81 37.16 0.22 0.77 16 15 C 0.13 1.26 6.35 -4.04 -0.03 1.24 16 16 N -0.62 -6.36 2.91 -172.35 -0.50 -6.86 16 17 C 0.10 0.64 7.34 -3.12 -0.02 0.62 16 18 C -0.13 -0.78 7.18 -25.10 -0.18 -0.96 16 19 C -0.16 -1.29 6.86 -26.74 -0.18 -1.47 16 20 C 0.52 6.61 7.74 -10.77 -0.08 6.53 16 21 O -0.51 -8.99 17.51 5.55 0.10 -8.89 16 22 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 24 H 0.02 0.51 7.52 -51.93 -0.39 0.12 16 25 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 26 H 0.10 2.01 8.14 -51.93 -0.42 1.58 16 27 H 0.08 0.93 8.13 -51.93 -0.42 0.50 16 28 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.09 1.02 7.93 -51.93 -0.41 0.61 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -36.75 310.03 -6.39 -43.14 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -5.41 Total: -4.64 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.68 Total: 0.23 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.27 Total: -34.25 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.58 Total: -27.08 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.75 -6.39 -43.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.084 kcal (2) G-P(sol) polarization free energy of solvation -36.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds