Wall clock time and date at job start Sun Mar 29 2020 23:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00129 * 2 1 4 4 H 1.48498 * 109.47232 * 269.99969 * 3 2 1 5 5 H 1.48498 * 109.47206 * 30.00193 * 3 2 1 6 6 H 1.48506 * 109.46957 * 149.99967 * 3 2 1 7 7 C 1.37874 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00005 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47531 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47288 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00450 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99901 * 180.02562 * 11 10 9 14 14 C 1.45202 * 116.99973 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47079 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47601 * 64.99534 * 15 14 13 17 17 C 1.46768 * 124.34879 * 89.99607 * 16 15 14 18 18 C 1.54480 * 105.55098 * 197.08340 * 17 16 15 19 19 C 1.54631 * 101.76472 * 334.54015 * 18 17 16 20 20 C 1.34621 * 124.47196 * 270.02849 * 16 15 14 21 21 O 1.21286 * 124.90539 * 359.55259 * 20 16 15 22 22 H 0.97002 * 119.99340 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47279 * 59.99832 * 9 7 2 24 24 H 1.09001 * 109.46873 * 299.99670 * 9 7 2 25 25 H 1.09000 * 109.47228 * 59.99156 * 10 9 7 26 26 H 1.09001 * 109.46712 * 299.99695 * 10 9 7 27 27 H 1.08998 * 109.47371 * 60.00044 * 14 13 11 28 28 H 1.08996 * 109.47060 * 299.99418 * 14 13 11 29 29 H 1.09002 * 109.47341 * 304.99655 * 15 14 13 30 30 H 1.08998 * 109.47560 * 184.99535 * 15 14 13 31 31 H 1.09002 * 110.24468 * 78.03845 * 17 16 15 32 32 H 1.09002 * 110.24463 * 316.12602 * 17 16 15 33 33 H 1.08995 * 110.97082 * 92.66028 * 18 17 16 34 34 H 1.09001 * 110.96924 * 216.42557 * 18 17 16 35 35 H 1.09000 * 110.48694 * 143.47575 * 19 18 17 36 36 H 1.08994 * 110.49106 * 266.12244 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6367 -0.0014 11 6 5.5285 -2.6367 -0.0014 12 8 6.1327 -1.5903 -0.0009 13 8 6.1996 -3.7991 -0.0031 14 6 7.6496 -3.7232 -0.0025 15 6 8.2344 -5.1370 -0.0039 16 7 7.8820 -5.8100 -1.2566 17 6 8.6978 -5.7700 -2.4760 18 6 7.7588 -6.2193 -3.6174 19 6 6.7242 -7.0788 -2.8546 20 6 6.7689 -6.5446 -1.4399 21 8 5.9244 -6.7480 -0.5935 22 1 -0.4849 0.8401 0.0004 23 1 3.8745 -0.6809 0.8905 24 1 3.8752 -0.6797 -0.8895 25 1 3.6585 -3.1496 -0.8920 26 1 3.6579 -3.1514 0.8880 27 1 7.9853 -3.1925 0.8885 28 1 7.9859 -3.1897 -0.8915 29 1 7.8283 -5.6991 0.8371 30 1 9.3192 -5.0817 0.0860 31 1 9.5405 -6.4560 -2.3887 32 1 9.0546 -4.7563 -2.6580 33 1 7.2807 -5.3612 -4.0897 34 1 8.2969 -6.8178 -4.3525 35 1 5.7298 -6.9466 -3.2810 36 1 7.0122 -8.1298 -2.8747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812613864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:16 Heat of formation + Delta-G solvation = -154.098680 kcal Electronic energy + Delta-G solvation = -18874.997809 eV Core-core repulsion = 15744.004956 eV Total energy + Delta-G solvation = -3130.992854 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.64251 -41.06191 -37.88290 -37.29168 -35.67006 -34.30209 -33.44446 -30.26574 -28.39924 -28.33959 -24.77893 -23.46982 -22.63479 -21.46522 -20.37439 -19.40311 -18.45285 -18.11153 -17.55406 -17.34141 -16.70762 -16.33959 -16.17096 -15.47745 -14.88208 -14.75084 -14.67698 -14.48036 -14.09332 -13.89130 -13.48334 -13.41831 -13.13528 -12.95183 -12.72733 -12.28737 -12.25769 -12.07028 -11.84646 -11.81899 -11.68859 -11.50548 -11.41233 -10.81492 -10.75791 -9.70562 -8.34205 -6.39513 1.15563 1.32959 1.34661 1.49052 1.59918 1.72885 2.12162 2.32869 3.00577 3.48856 3.66661 3.75517 3.93354 4.00044 4.09001 4.20076 4.24445 4.29533 4.32845 4.45758 4.65566 4.72133 4.76472 4.80861 4.92452 5.10409 5.19278 5.24710 5.30474 5.32710 5.54871 5.63315 6.17957 6.18752 6.65095 6.77316 7.23847 7.25584 8.81772 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.031424 B = 0.004388 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.830056 B = 6379.296696 C = 6689.154945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.537 4.537 8 H 0.045 0.955 9 C 0.007 3.993 10 C -0.093 4.093 11 C 0.469 3.531 12 O -0.539 6.539 13 O -0.355 6.355 14 C 0.035 3.965 15 C 0.132 3.868 16 N -0.625 5.625 17 C 0.096 3.904 18 C -0.124 4.124 19 C -0.153 4.153 20 C 0.498 3.502 21 O -0.575 6.575 22 H 0.269 0.731 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.204 -13.685 -7.207 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.574 4.574 8 H 0.064 0.936 9 C -0.031 4.031 10 C -0.131 4.131 11 C 0.315 3.685 12 O -0.429 6.429 13 O -0.271 6.271 14 C -0.039 4.039 15 C 0.010 3.990 16 N -0.359 5.359 17 C -0.025 4.025 18 C -0.162 4.162 19 C -0.193 4.193 20 C 0.287 3.713 21 O -0.454 6.454 22 H 0.078 0.922 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.141 0.859 35 H 0.113 0.887 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.870 -13.361 -6.702 28.164 hybrid contribution -0.289 0.980 0.256 1.053 sum 23.581 -12.382 -6.446 27.403 Atomic orbital electron populations 1.70034 1.07956 1.28340 1.51925 1.25840 0.95556 1.03051 0.93848 0.85755 0.79246 0.78901 0.79387 1.18967 1.20152 1.18217 1.21326 0.90928 0.93883 1.51312 0.93628 1.19287 0.94380 0.92244 0.97165 1.21290 0.85386 1.00802 1.05595 1.24171 0.92210 0.81305 0.70860 1.90585 1.71101 1.34045 1.47218 1.86678 1.23038 1.33862 1.83564 1.23867 0.76336 1.00229 1.03510 1.21596 1.02053 0.89137 0.86258 1.48513 1.23224 1.50406 1.13799 1.22401 0.94243 1.03761 0.82137 1.22642 0.96063 1.00220 0.97250 1.22378 1.02990 1.02766 0.91156 1.21795 0.80452 0.77796 0.91217 1.90724 1.42118 1.61421 1.51183 0.92169 0.96284 0.96367 0.87889 0.87777 0.89524 0.90705 0.90417 0.83478 0.88150 0.89379 0.90642 0.85914 0.88716 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 2 C 0.02 0.90 5.47 84.65 0.46 1.37 16 3 Si 0.94 46.43 27.47 68.60 1.88 48.31 16 4 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 7 C -0.54 -31.91 9.66 25.60 0.25 -31.67 16 8 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 9 C 0.01 0.35 3.33 29.85 0.10 0.45 16 10 C -0.09 -3.99 5.75 29.85 0.17 -3.82 16 11 C 0.47 18.56 7.96 71.23 0.57 19.12 16 12 O -0.54 -23.30 15.73 21.96 0.35 -22.96 16 13 O -0.35 -12.16 9.80 -51.40 -0.50 -12.67 16 14 C 0.04 0.83 5.81 71.98 0.42 1.25 16 15 C 0.13 2.26 6.35 86.38 0.55 2.81 16 16 N -0.63 -11.40 2.91 -817.66 -2.38 -13.77 16 17 C 0.10 0.85 7.34 86.83 0.64 1.49 16 18 C -0.12 -1.06 7.18 31.65 0.23 -0.83 16 19 C -0.15 -2.30 6.86 30.59 0.21 -2.09 16 20 C 0.50 12.49 7.74 87.87 0.68 13.17 16 21 O -0.58 -20.94 17.51 -3.05 -0.05 -21.00 16 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 23 H 0.02 0.98 7.16 -2.39 -0.02 0.97 16 24 H 0.02 0.92 7.52 -2.39 -0.02 0.90 16 25 H 0.10 4.24 8.14 -2.39 -0.02 4.22 16 26 H 0.10 4.31 8.14 -2.39 -0.02 4.29 16 27 H 0.09 1.91 8.13 -2.39 -0.02 1.89 16 28 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.08 1.63 7.93 -2.39 -0.02 1.61 16 30 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -81.63 310.03 4.87 -76.77 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: 1.00 Total: 3.56 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 4.27 Total: 1.25 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -2.08 Total: -73.27 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -0.21 Total: -56.62 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.88 Total: 48.31 kcal Total: -81.63 4.87 -76.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.332 kcal (2) G-P(sol) polarization free energy of solvation -81.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds