Wall clock time and date at job start Sun Mar 29 2020 23:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 110.85528 * 2 1 4 4 O 1.45198 * 109.47356 * 303.78807 * 3 2 1 5 5 C 1.34225 * 117.00160 * 179.97438 * 4 3 2 6 6 O 1.20826 * 120.00086 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00292 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.47444 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47169 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00312 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00222 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99604 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00161 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46806 * 60.00661 * 13 11 9 15 15 H 1.48498 * 109.47076 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47373 * 300.00440 * 13 11 9 17 17 C 1.54480 * 111.00378 * 236.18875 * 2 1 3 18 18 N 1.46766 * 105.47221 * 267.28312 * 17 2 1 19 19 C 1.34413 * 111.30157 * 342.98130 * 18 17 2 20 20 O 1.21279 * 124.94390 * 180.66992 * 19 18 17 21 21 C 1.51286 * 110.11622 * 0.40982 * 19 18 17 22 22 H 1.09000 * 109.47248 * 296.20796 * 1 2 3 23 23 H 1.08997 * 109.47259 * 56.21443 * 1 2 3 24 24 H 1.09003 * 109.46843 * 176.20728 * 1 2 3 25 25 H 1.09002 * 109.47280 * 63.79027 * 3 2 1 26 26 H 1.08999 * 109.47177 * 183.79057 * 3 2 1 27 27 H 1.09005 * 109.46657 * 300.00750 * 7 5 4 28 28 H 1.08999 * 109.46778 * 59.99993 * 7 5 4 29 29 H 1.09003 * 109.46799 * 300.00275 * 8 7 5 30 30 H 1.09001 * 109.46921 * 59.99592 * 8 7 5 31 31 H 0.97001 * 119.99867 * 179.97438 * 12 11 9 32 32 H 1.09003 * 110.24307 * 26.27686 * 17 2 1 33 33 H 1.08996 * 110.24518 * 148.19510 * 17 2 1 34 34 H 0.96999 * 124.34769 * 162.98345 * 18 17 2 35 35 H 1.09004 * 110.48421 * 134.93025 * 21 19 18 36 36 H 1.09002 * 110.48475 * 257.44276 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0747 1.4297 0.0000 4 8 1.5356 2.1531 -1.1377 5 6 1.9175 3.4315 -1.2836 6 8 2.6775 3.9296 -0.4872 7 6 1.3984 4.2458 -2.4406 8 6 1.9841 5.6577 -2.3741 9 6 1.4655 6.4717 -3.5314 10 1 0.7858 6.0266 -4.2430 11 6 1.8579 7.7849 -3.6813 12 7 2.6852 8.3270 -2.8145 13 14 1.2156 8.7936 -5.1164 14 1 -0.2659 8.8678 -5.0454 15 1 1.7839 10.1640 -5.0518 16 1 1.6185 8.1509 -6.3929 17 6 2.0837 -0.8025 -1.1983 18 7 2.2866 -2.1665 -0.6958 19 6 2.2964 -2.1954 0.6480 20 8 2.4577 -3.1918 1.3202 21 6 2.0834 -0.8030 1.2000 22 1 -0.3634 0.4538 0.9220 23 1 -0.3633 0.5714 -0.8541 24 1 -0.3633 -1.0255 -0.0680 25 1 1.7799 1.9309 0.9220 26 1 3.1623 1.4042 -0.0679 27 1 1.6934 3.7741 -3.3780 28 1 0.3111 4.3002 -2.3876 29 1 1.6895 6.1294 -1.4366 30 1 3.0714 5.6029 -2.4272 31 1 2.9616 9.2508 -2.9202 32 1 1.3628 -0.8051 -2.0158 33 1 3.0302 -0.3773 -1.5319 34 1 2.3992 -2.9468 -1.2608 35 1 1.3580 -0.8220 2.0134 36 1 3.0278 -0.3796 1.5419 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813088607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:10 Heat of formation + Delta-G solvation = -142.861921 kcal Electronic energy + Delta-G solvation = -18575.670607 eV Core-core repulsion = 15445.165016 eV Total energy + Delta-G solvation = -3130.505592 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.95397 -39.88144 -37.41345 -35.96846 -33.63499 -33.30113 -31.18808 -28.76226 -27.53766 -26.38786 -25.45884 -22.28516 -20.93954 -19.91450 -19.79680 -17.60075 -17.33621 -16.64112 -16.32164 -16.04638 -15.39037 -15.08296 -14.54912 -14.46851 -14.17891 -13.76558 -13.49628 -13.19960 -12.71505 -12.42526 -12.27227 -12.21201 -11.66754 -11.45155 -11.31628 -11.06986 -10.97644 -10.70102 -10.44939 -10.20774 -10.09245 -9.97872 -9.59591 -9.42486 -9.23516 -8.41317 -6.05274 -4.10536 2.30355 2.74878 2.90159 3.07607 3.29979 3.35115 3.36729 3.97510 3.99991 4.33728 4.41939 4.52739 4.75182 5.13297 5.19908 5.25926 5.29376 5.30168 5.33755 5.43742 5.52221 5.66986 5.73027 5.98859 6.05725 6.13268 6.45845 6.56463 6.68187 6.85663 7.61601 7.68264 7.93612 7.94274 8.19361 8.34839 8.96428 9.53793 11.05642 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.058472 B = 0.003357 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.745022 B = 8338.186171 C = 8496.462028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C 0.078 3.922 4 O -0.363 6.363 5 C 0.457 3.543 6 O -0.504 6.504 7 C -0.103 4.103 8 C 0.033 3.967 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.110 3.890 18 N -0.731 5.731 19 C 0.523 3.477 20 O -0.538 6.538 21 C -0.148 4.148 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.410 0.590 35 H 0.109 0.891 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -17.788 3.517 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C 0.004 3.996 4 O -0.281 6.281 5 C 0.300 3.700 6 O -0.391 6.391 7 C -0.140 4.140 8 C -0.004 4.004 9 C -0.568 4.568 10 H 0.076 0.924 11 C -0.143 4.143 12 N -0.528 5.528 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.015 4.015 18 N -0.386 5.386 19 C 0.309 3.691 20 O -0.415 6.415 21 C -0.188 4.188 22 H 0.083 0.917 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.249 0.751 35 H 0.127 0.873 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.043 -17.901 4.258 18.650 hybrid contribution -0.095 0.376 -0.931 1.009 sum -3.138 -17.525 3.327 18.111 Atomic orbital electron populations 1.21806 0.91788 1.02271 1.03655 1.21538 0.97833 0.93217 0.94597 1.22855 0.98297 0.89500 0.88984 1.86534 1.67784 1.26619 1.47176 1.24788 0.78426 0.79418 0.87325 1.90650 1.33515 1.71021 1.43877 1.21769 1.02297 0.97375 0.92590 1.19014 0.96889 0.86597 0.97925 1.21111 1.28617 0.96546 1.10571 0.92355 1.25021 0.95018 0.97867 0.96390 1.69980 1.33137 1.13952 1.35681 0.86601 0.79162 0.79223 0.82662 1.20148 1.21252 1.20158 1.22236 1.01776 0.80779 0.96695 1.46264 1.74043 1.10649 1.07677 1.20783 0.74903 0.90703 0.82672 1.90762 1.50354 1.37488 1.62909 1.22450 1.04563 0.93179 0.98654 0.91721 0.90444 0.92343 0.90537 0.90916 0.88947 0.88928 0.95599 0.95610 0.92753 0.89244 0.90430 0.75097 0.87291 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.35 37.16 0.31 -0.78 16 2 C -0.07 -0.59 0.80 -152.88 -0.12 -0.71 16 3 C 0.08 0.85 4.26 37.16 0.16 1.01 16 4 O -0.36 -4.96 9.32 -39.24 -0.37 -5.32 16 5 C 0.46 8.14 7.96 36.01 0.29 8.42 16 6 O -0.50 -10.71 15.73 -18.75 -0.29 -11.00 16 7 C -0.10 -1.95 5.75 -27.88 -0.16 -2.11 16 8 C 0.03 0.83 4.26 -27.89 -0.12 0.72 16 9 C -0.53 -14.39 9.11 -34.44 -0.31 -14.70 16 10 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 13 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C 0.11 0.83 6.79 -3.12 -0.02 0.81 16 18 N -0.73 -5.90 6.24 -59.20 -0.37 -6.27 16 19 C 0.52 5.53 8.43 -10.86 -0.09 5.44 16 20 O -0.54 -7.90 18.03 5.56 0.10 -7.80 16 21 C -0.15 -1.21 5.97 -26.74 -0.16 -1.37 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.66 7.56 -51.93 -0.39 0.27 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.85 8.13 -51.93 -0.42 0.42 16 26 H 0.07 0.79 8.04 -51.93 -0.42 0.37 16 27 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.09 0.60 7.91 -51.93 -0.41 0.18 16 33 H 0.08 0.59 7.82 -51.93 -0.41 0.18 16 34 H 0.41 2.69 8.96 -40.82 -0.37 2.32 16 35 H 0.11 0.80 7.91 -51.93 -0.41 0.39 16 36 H 0.11 0.81 7.90 -51.93 -0.41 0.40 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -33.52 309.67 -6.19 -39.70 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.31 Total: -2.46 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.33 Total: -1.72 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.37 Total: -32.03 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.56 Total: -24.12 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.52 -6.19 -39.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813088607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.157 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds